Wall clock time and date at job start Sat Apr 11 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47380 * 2 1 4 4 N 1.46503 * 109.46911 * 120.00030 * 2 1 3 5 5 C 1.34780 * 119.99965 * 155.27960 * 4 2 1 6 6 O 1.21276 * 120.00154 * 359.71421 * 5 4 2 7 7 C 1.50705 * 119.99765 * 179.72342 * 5 4 2 8 8 N 1.46906 * 109.46717 * 179.97438 * 7 5 4 9 9 C 1.46895 * 110.99662 * 66.04739 * 8 7 5 10 10 C 1.46901 * 110.99432 * 190.00132 * 8 7 5 11 11 C 1.50699 * 109.46811 * 170.00452 * 10 8 7 12 12 O 1.21282 * 120.00055 * 359.97438 * 11 10 8 13 13 N 1.34773 * 119.99855 * 179.97438 * 11 10 8 14 14 C 1.46506 * 120.00121 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.63590 * 325.70120 * 14 13 11 16 16 C 1.55153 * 110.72159 * 88.83955 * 14 13 11 17 17 C 1.55124 * 101.48584 * 153.73513 * 16 14 13 18 18 N 1.47420 * 104.94242 * 323.22652 * 17 16 14 19 19 C 1.36940 * 125.64524 * 204.03789 * 18 17 16 20 20 H 1.08000 * 119.99735 * 161.44514 * 19 18 17 21 21 C 1.38807 * 120.00229 * 341.44506 * 19 18 17 22 22 N 1.31618 * 120.00071 * 157.60227 * 21 19 18 23 23 Si 1.86801 * 119.99995 * 337.61140 * 21 19 18 24 24 H 1.48500 * 109.47175 * 84.53641 * 23 21 19 25 25 H 1.48499 * 109.46884 * 204.53914 * 23 21 19 26 26 H 1.48504 * 109.47083 * 324.53916 * 23 21 19 27 27 C 1.47020 * 108.70646 * 23.99846 * 18 17 16 28 28 H 1.08994 * 109.89005 * 239.52738 * 27 18 17 29 29 C 1.53002 * 110.00840 * 118.43073 * 27 18 17 30 30 H 1.08990 * 109.47377 * 300.00505 * 1 2 3 31 31 H 1.09008 * 109.47010 * 60.00090 * 1 2 3 32 32 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47357 * 239.99644 * 2 1 3 34 34 H 1.09001 * 109.47144 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46659 * 299.99553 * 3 2 1 36 36 H 1.09000 * 109.46900 * 59.99811 * 3 2 1 37 37 H 0.96996 * 120.00242 * 334.99080 * 4 2 1 38 38 H 1.09000 * 109.46858 * 299.99107 * 7 5 4 39 39 H 1.08994 * 109.47159 * 59.99544 * 7 5 4 40 40 H 1.08997 * 109.47446 * 59.99958 * 9 8 7 41 41 H 1.09005 * 109.46470 * 180.02562 * 9 8 7 42 42 H 1.09001 * 109.47048 * 299.99246 * 9 8 7 43 43 H 1.09003 * 109.46764 * 289.99389 * 10 8 7 44 44 H 1.08992 * 109.47759 * 49.99507 * 10 8 7 45 45 H 0.96997 * 120.00112 * 359.97438 * 13 11 10 46 46 H 1.09005 * 111.00624 * 271.94522 * 16 14 13 47 47 H 1.09003 * 110.99896 * 35.79270 * 16 14 13 48 48 H 1.09003 * 110.41929 * 204.29627 * 17 16 14 49 49 H 1.09002 * 110.29950 * 82.09618 * 17 16 14 50 50 H 0.97003 * 120.00108 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.47350 * 302.11284 * 29 27 18 52 52 H 1.08997 * 109.47318 * 62.11578 * 29 27 18 53 53 H 1.09005 * 109.47186 * 182.12077 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 3.2425 -1.2544 1.1963 6 8 3.9378 -1.1944 0.2045 7 6 3.7472 -1.9594 2.4290 8 7 5.0958 -2.4838 2.1754 9 6 6.0574 -1.3907 1.9795 10 6 5.5263 -3.3757 3.2603 11 6 6.7947 -4.0821 2.8563 12 8 7.2909 -3.8644 1.7713 13 7 7.3777 -4.9558 3.7008 14 6 8.6105 -5.6430 3.3079 15 1 8.6118 -5.8476 2.2373 16 6 9.8557 -4.8088 3.7089 17 6 10.9327 -5.9149 3.8607 18 7 10.2171 -7.0650 4.4425 19 6 10.7878 -8.0751 5.1698 20 1 10.1730 -8.7009 5.7997 21 6 12.1565 -8.2948 5.0976 22 7 12.7740 -8.9268 6.0731 23 14 13.1220 -7.6932 3.6159 24 1 13.4949 -6.2693 3.8130 25 1 14.3524 -8.5103 3.4619 26 1 12.2863 -7.8216 2.3951 27 6 8.7890 -6.9473 4.1133 28 1 8.1999 -6.9010 5.0291 29 6 8.3459 -8.1445 3.2698 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9563 0.8900 37 1 1.4622 -0.7386 1.9895 38 1 3.7810 -1.2565 3.2614 39 1 3.0778 -2.7833 2.6760 40 1 6.0869 -0.7681 2.8737 41 1 7.0475 -1.8069 1.7932 42 1 5.7513 -0.7862 1.1257 43 1 5.7080 -2.7901 4.1615 44 1 4.7470 -4.1120 3.4564 45 1 6.9811 -5.1297 4.5687 46 1 10.1237 -4.1039 2.9218 47 1 9.6918 -4.2923 4.6546 48 1 11.7263 -5.5836 4.5305 49 1 11.3447 -6.1778 2.8864 50 1 13.7305 -9.0799 6.0228 51 1 8.9509 -8.1950 2.3645 52 1 8.4747 -9.0615 3.8446 53 1 7.2962 -8.0296 2.9992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656972784.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:44 Heat of formation + Delta-G solvation = -61.207159 kcal Electronic energy + Delta-G solvation = -30159.610867 eV Core-core repulsion = 26066.287218 eV Total energy + Delta-G solvation = -4093.323649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.25659 -40.75638 -39.47703 -37.63763 -36.56557 -35.54442 -34.04256 -32.71328 -32.24321 -31.38323 -29.53501 -28.74317 -28.08889 -26.40835 -25.85286 -24.41037 -22.75963 -22.04695 -21.53640 -21.36357 -20.94752 -18.82722 -18.44262 -17.92802 -17.40456 -17.07155 -16.88858 -16.82688 -16.41945 -16.05751 -15.63856 -15.43012 -15.31140 -15.14798 -14.85652 -14.67771 -14.54768 -14.29020 -13.98249 -13.89211 -13.74270 -13.50560 -13.22104 -13.14331 -13.06693 -12.92508 -12.86420 -12.64258 -12.57506 -12.50141 -12.45189 -12.25218 -12.07311 -12.00470 -11.89598 -11.60188 -11.48488 -10.97182 -10.81101 -10.54669 -10.05157 -9.96611 -9.23960 -9.07625 -8.17076 -5.42658 1.29033 1.38460 1.45478 1.72436 1.74381 1.90692 2.31505 2.40939 3.03638 3.09569 3.31072 3.67719 3.77083 3.80835 3.88191 4.01768 4.14185 4.16222 4.24950 4.29755 4.34085 4.34751 4.41598 4.45512 4.47248 4.55865 4.61660 4.66359 4.74304 4.74750 4.77349 4.80712 4.90583 4.94314 4.99517 5.04812 5.11519 5.15701 5.22685 5.28005 5.33159 5.39407 5.61550 5.63405 5.71052 5.91946 5.95230 6.12171 6.68524 6.69805 6.75977 7.39067 7.41307 7.54713 8.10725 9.02401 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.034948 B = 0.001833 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.000096 B =15272.646244 C =15578.072925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 C -0.159 4.159 4 N -0.716 5.716 5 C 0.506 3.494 6 O -0.571 6.571 7 C 0.040 3.960 8 N -0.537 5.537 9 C 0.025 3.975 10 C 0.045 3.955 11 C 0.509 3.491 12 O -0.568 6.568 13 N -0.705 5.705 14 C 0.152 3.848 15 H 0.079 0.921 16 C -0.126 4.126 17 C 0.105 3.895 18 N -0.617 5.617 19 C -0.219 4.219 20 H 0.070 0.930 21 C -0.032 4.032 22 N -0.953 5.953 23 Si 0.933 3.067 24 H -0.273 1.273 25 H -0.309 1.309 26 H -0.277 1.277 27 C 0.152 3.848 28 H 0.065 0.935 29 C -0.149 4.149 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.416 0.584 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.140 0.860 45 H 0.417 0.583 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.016 0.984 50 H 0.261 0.739 51 H 0.034 0.966 52 H 0.044 0.956 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.264 21.026 -4.449 37.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 C -0.217 4.217 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.449 6.449 7 C -0.091 4.091 8 N -0.262 5.262 9 C -0.123 4.123 10 C -0.086 4.086 11 C 0.296 3.704 12 O -0.446 6.446 13 N -0.358 5.358 14 C 0.046 3.954 15 H 0.097 0.903 16 C -0.166 4.166 17 C -0.020 4.020 18 N -0.343 5.343 19 C -0.347 4.347 20 H 0.088 0.912 21 C -0.227 4.227 22 N -0.600 5.600 23 Si 0.763 3.237 24 H -0.200 1.200 25 H -0.238 1.238 26 H -0.203 1.203 27 C 0.046 3.954 28 H 0.082 0.918 29 C -0.208 4.208 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.158 0.842 45 H 0.254 0.746 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.070 0.930 51 H 0.053 0.947 52 H 0.064 0.936 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.296 20.833 -6.269 36.491 hybrid contribution 1.164 0.045 0.481 1.261 sum -28.132 20.878 -5.788 35.508 Atomic orbital electron populations 1.22007 0.91620 1.03136 1.04089 1.20940 0.95714 0.92537 0.88021 1.22141 1.00233 0.96090 1.03244 1.46001 1.17156 1.56415 1.17460 1.21077 0.81565 0.78129 0.89969 1.90709 1.57261 1.60126 1.36793 1.22117 0.91032 1.01391 0.94526 1.61122 1.01935 1.19789 1.43322 1.22466 0.96633 0.92705 1.00461 1.22058 0.95301 0.97747 0.93447 1.21182 0.86223 0.79104 0.83862 1.90706 1.65877 1.64044 1.24004 1.45786 1.25751 1.43645 1.20657 1.21647 0.83985 0.91083 0.98734 0.90273 1.23055 0.94600 0.96572 1.02335 1.22014 0.96010 0.88227 0.95774 1.44898 1.04052 1.23131 1.62183 1.18536 0.91382 1.08493 1.16316 0.91213 1.25487 0.97443 0.99906 0.99822 1.69934 1.09547 1.48319 1.32181 0.86152 0.77588 0.77474 0.82449 1.19967 1.23777 1.20303 1.21276 0.85132 0.92896 0.96089 0.91754 1.22121 1.00591 0.98841 0.99281 0.90320 0.90363 0.91788 0.92444 0.95003 0.90773 0.90983 0.74640 0.88669 0.84533 0.94544 0.92275 0.91858 0.88538 0.84239 0.74561 0.90571 0.89457 0.93637 0.96683 0.92996 0.94722 0.93646 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.38 71.98 0.68 -0.02 16 2 C 0.13 1.47 3.18 44.99 0.14 1.61 16 3 C -0.16 -1.76 9.48 71.98 0.68 -1.08 16 4 N -0.72 -6.94 5.08 -442.52 -2.25 -9.18 16 5 C 0.51 8.68 7.52 87.66 0.66 9.34 16 6 O -0.57 -16.46 13.97 -3.02 -0.04 -16.50 16 7 C 0.04 0.43 5.45 85.56 0.47 0.90 16 8 N -0.54 -10.57 4.24 -931.65 -3.95 -14.51 16 9 C 0.03 0.60 8.85 127.69 1.13 1.73 16 10 C 0.04 0.63 5.45 85.56 0.47 1.10 16 11 C 0.51 12.31 7.52 87.66 0.66 12.97 16 12 O -0.57 -19.91 14.02 -3.04 -0.04 -19.95 16 13 N -0.70 -15.75 5.19 -436.92 -2.27 -18.02 16 14 C 0.15 4.75 2.79 46.18 0.13 4.88 16 15 H 0.08 2.81 7.33 -2.39 -0.02 2.80 16 16 C -0.13 -4.23 6.79 32.06 0.22 -4.01 16 17 C 0.10 4.53 4.70 86.93 0.41 4.94 16 18 N -0.62 -28.57 2.94 -667.85 -1.96 -30.54 16 19 C -0.22 -12.20 10.19 84.03 0.86 -11.34 16 20 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 21 C -0.03 -1.88 5.43 84.86 0.46 -1.42 16 22 N -0.95 -59.72 13.97 21.65 0.30 -59.41 16 23 Si 0.93 47.99 24.27 68.60 1.66 49.65 16 24 H -0.27 -13.36 6.49 99.48 0.65 -12.72 16 25 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 26 H -0.28 -14.12 6.66 99.48 0.66 -13.45 16 27 C 0.15 5.42 3.48 45.34 0.16 5.58 16 28 H 0.06 2.09 7.70 -2.39 -0.02 2.07 16 29 C -0.15 -5.18 9.14 71.98 0.66 -4.52 16 30 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 1.01 7.58 -2.38 -0.02 0.99 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.42 0.86 8.60 -92.71 -0.80 0.07 16 38 H 0.10 0.48 8.12 -2.39 -0.02 0.46 16 39 H 0.14 0.61 7.93 -2.39 -0.02 0.59 16 40 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.06 1.76 5.83 -2.38 -0.01 1.74 16 42 H 0.06 1.77 5.88 -2.39 -0.01 1.76 16 43 H 0.10 0.82 8.12 -2.39 -0.02 0.80 16 44 H 0.14 1.03 7.93 -2.39 -0.02 1.02 16 45 H 0.42 6.42 8.34 -92.71 -0.77 5.65 16 46 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.05 2.10 6.64 -2.39 -0.02 2.08 16 49 H 0.02 0.71 5.57 -2.39 -0.01 0.69 16 50 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 51 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.04 1.70 8.05 -2.39 -0.02 1.68 16 53 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -84.94 412.83 -1.55 -86.49 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -0.77 Total: 11.32 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 7.77 Total: 20.65 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -10.13 Total: -131.67 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.08 Total: -36.45 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.66 Total: 49.65 kcal Total: -84.94 -1.55 -86.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656972784.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.282 kcal (2) G-P(sol) polarization free energy of solvation -84.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds