Wall clock time and date at job start Sat Apr 11 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47119 * 2 1 4 4 C 1.46852 * 110.99344 * 288.23215 * 3 2 1 5 5 C 1.53034 * 109.51223 * 174.14715 * 4 3 2 6 6 C 1.53121 * 109.27908 * 59.18837 * 5 4 3 7 7 C 1.53119 * 109.16038 * 302.34175 * 6 5 4 8 8 C 1.46843 * 110.99988 * 164.02769 * 3 2 1 9 9 H 1.08993 * 109.46564 * 65.83786 * 8 3 2 10 10 C 1.50702 * 109.46676 * 305.85496 * 8 3 2 11 11 O 1.21282 * 119.99586 * 332.48365 * 10 8 3 12 12 N 1.34766 * 120.00090 * 152.75361 * 10 8 3 13 13 C 1.46500 * 120.00292 * 0.02562 * 12 10 8 14 14 C 1.46500 * 120.00143 * 180.02562 * 12 10 8 15 15 C 1.52997 * 109.47398 * 89.99964 * 14 12 10 16 16 N 1.46899 * 109.47514 * 180.02562 * 15 14 12 17 17 C 1.46907 * 111.00344 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.46962 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00168 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99625 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99952 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00016 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00223 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00122 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99758 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47371 * 90.00282 * 25 23 21 27 27 H 1.48495 * 109.47008 * 210.00249 * 25 23 21 28 28 H 1.48502 * 109.47065 * 330.00107 * 25 23 21 29 29 H 1.08997 * 109.46798 * 299.99237 * 1 2 3 30 30 H 1.09000 * 109.47215 * 59.99736 * 1 2 3 31 31 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.47078 * 240.00643 * 2 1 3 33 33 H 1.09000 * 109.47740 * 120.00270 * 2 1 3 34 34 H 1.08998 * 109.46058 * 54.14212 * 4 3 2 35 35 H 1.08999 * 109.46970 * 294.16487 * 4 3 2 36 36 H 1.08998 * 109.51013 * 299.24197 * 5 4 3 37 37 H 1.09008 * 109.53525 * 179.14163 * 5 4 3 38 38 H 1.08997 * 109.52266 * 182.43608 * 6 5 4 39 39 H 1.08998 * 109.57647 * 62.27745 * 6 5 4 40 40 H 1.09000 * 109.50036 * 297.71245 * 7 6 5 41 41 H 1.08995 * 109.53751 * 177.61499 * 7 6 5 42 42 H 1.09004 * 109.47148 * 90.00241 * 13 12 10 43 43 H 1.08998 * 109.47445 * 210.00044 * 13 12 10 44 44 H 1.08997 * 109.46858 * 330.00120 * 13 12 10 45 45 H 1.09004 * 109.47692 * 209.99825 * 14 12 10 46 46 H 1.09002 * 109.47111 * 329.99995 * 14 12 10 47 47 H 1.09001 * 109.47309 * 300.00413 * 15 14 12 48 48 H 1.08994 * 109.47505 * 60.00204 * 15 14 12 49 49 H 1.00897 * 110.99718 * 303.95168 * 16 15 14 50 50 H 1.08995 * 109.46892 * 300.00411 * 17 16 15 51 51 H 1.08998 * 109.46746 * 59.99645 * 17 16 15 52 52 H 0.97001 * 120.00433 * 359.97438 * 20 18 17 53 53 H 0.96998 * 119.99770 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7906 2.0240 -1.3022 5 6 2.1774 3.5024 -1.2212 6 6 3.6525 3.6182 -0.8273 7 6 3.8737 2.9029 0.5083 8 6 3.4377 1.4418 0.3772 9 1 4.0374 0.9513 -0.3894 10 6 3.6353 0.7387 1.6955 11 8 2.7247 0.6814 2.4946 12 7 4.8253 0.1784 1.9887 13 6 5.9272 0.2532 1.0261 14 6 5.0172 -0.5055 3.2699 15 6 4.6475 -1.9826 3.1200 16 7 4.8394 -2.6683 4.4049 17 6 4.4927 -4.0919 4.2989 18 6 4.7022 -4.7606 5.6330 19 8 5.1015 -4.1149 6.5790 20 7 4.4469 -6.0763 5.7748 21 6 4.6370 -6.6846 6.9886 22 1 4.9917 -6.1096 7.8311 23 6 4.3733 -8.0410 7.1350 24 7 4.5550 -8.6239 8.2986 25 14 3.7590 -9.0355 5.6779 26 1 4.9178 -9.5945 4.9362 27 1 2.8999 -10.1453 6.1630 28 1 2.9710 -8.1574 4.7761 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 0.7372 1.9383 -1.5685 35 1 2.3982 1.5306 -2.0609 36 1 1.5607 3.9995 -0.4724 37 1 2.0219 3.9736 -2.1918 38 1 3.9211 4.6697 -0.7262 39 1 4.2729 3.1560 -1.5951 40 1 3.2837 3.3905 1.2843 41 1 4.9300 2.9450 0.7738 42 1 6.5115 1.1544 1.2120 43 1 6.5661 -0.6231 1.1362 44 1 5.5240 0.2840 0.0139 45 1 6.0605 -0.4213 3.5742 46 1 4.3801 -0.0465 4.0258 47 1 3.6043 -2.0670 2.8158 48 1 5.2846 -2.4417 2.3642 49 1 5.7835 -2.5497 4.7406 50 1 3.4484 -4.1905 4.0026 51 1 5.1287 -4.5660 3.5513 52 1 4.1279 -6.5928 5.0182 53 1 4.3712 -9.5709 8.4006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664395755.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:58 Heat of formation + Delta-G solvation = -83.193484 kcal Electronic energy + Delta-G solvation = -30285.549556 eV Core-core repulsion = 26191.272509 eV Total energy + Delta-G solvation = -4094.277048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65292 -40.34732 -39.28543 -37.47521 -36.31819 -35.80716 -35.18047 -33.77639 -32.59901 -30.80494 -30.73153 -28.24871 -27.40313 -26.02896 -25.30249 -24.59165 -23.16715 -22.41372 -21.35996 -20.94712 -20.34037 -19.98054 -18.32064 -17.89824 -17.63265 -17.19755 -16.70092 -16.61393 -16.39436 -15.94220 -15.67447 -15.49953 -15.29573 -15.11182 -14.87917 -14.71684 -14.55585 -14.35287 -14.23566 -14.09197 -13.90386 -13.81232 -13.52185 -13.41427 -13.18377 -12.99233 -12.80301 -12.77968 -12.69660 -12.43860 -12.30672 -12.09600 -12.05289 -11.99707 -11.74572 -11.56948 -11.53419 -11.23760 -10.59892 -10.50090 -10.27351 -9.73977 -9.39986 -9.25613 -8.42992 -6.04216 1.29240 1.33819 1.43383 1.55022 1.82281 1.91725 2.21544 2.70776 2.86881 3.12999 3.38378 3.48338 3.81476 3.86125 3.93918 3.97816 4.06810 4.10851 4.12158 4.20783 4.27608 4.32562 4.37488 4.41391 4.42501 4.51212 4.54182 4.56412 4.66589 4.71259 4.77191 4.81973 4.86414 4.92973 4.93828 4.97342 5.08608 5.10044 5.19673 5.23677 5.33327 5.42935 5.47514 5.51337 5.84884 5.96053 5.98286 6.13427 6.33534 6.39898 6.57215 6.85323 7.18067 7.36595 7.92665 8.74583 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.001963 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.110129 B =14261.591585 C =15114.957616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.049 3.951 3 N -0.538 5.538 4 C 0.055 3.945 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.104 4.104 8 C 0.075 3.925 9 H 0.084 0.916 10 C 0.509 3.491 11 O -0.563 6.563 12 N -0.613 5.613 13 C 0.066 3.934 14 C 0.121 3.879 15 C 0.060 3.940 16 N -0.688 5.688 17 C 0.066 3.934 18 C 0.448 3.552 19 O -0.613 6.613 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.234 1.234 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.350 0.650 50 H 0.104 0.896 51 H 0.083 0.917 52 H 0.390 0.610 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 22.330 -32.301 39.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 N -0.265 5.265 4 C -0.072 4.072 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.142 4.142 8 C -0.036 4.036 9 H 0.102 0.898 10 C 0.297 3.703 11 O -0.441 6.441 12 N -0.347 5.347 13 C -0.075 4.075 14 C -0.002 4.002 15 C -0.070 4.070 16 N -0.321 5.321 17 C -0.067 4.067 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.231 5.231 21 C -0.460 4.460 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.573 5.573 25 Si 0.785 3.215 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.157 1.157 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.169 0.831 50 H 0.123 0.877 51 H 0.101 0.899 52 H 0.225 0.775 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.151 23.003 -30.526 38.240 hybrid contribution 0.699 -1.842 -0.540 2.042 sum -0.452 21.162 -31.066 37.591 Atomic orbital electron populations 1.21669 0.94184 1.01750 1.01961 1.22098 0.97165 0.88519 1.00097 1.61648 1.15787 1.17824 1.31223 1.22239 1.01912 0.95248 0.87782 1.21630 0.96627 0.94970 1.02399 1.21564 0.96600 1.01233 0.95650 1.21533 1.01618 0.91475 0.99559 1.21718 0.90716 0.98056 0.93110 0.89846 1.21070 0.81755 0.78135 0.89338 1.90733 1.42408 1.59837 1.51098 1.47954 1.12951 1.54842 1.18921 1.22204 0.88897 1.04131 0.92264 1.21241 1.02659 0.91017 0.85314 1.22171 1.01061 0.94226 0.89535 1.59849 1.33040 1.10765 1.28478 1.21581 1.03639 0.88719 0.92750 1.20916 0.81983 0.81945 0.91577 1.90543 1.51054 1.64567 1.43598 1.42020 1.61201 1.08778 1.11120 1.19016 1.44308 0.93619 0.89015 0.92650 1.26136 0.97023 0.97262 1.00990 1.69801 1.48920 1.12671 1.25928 0.85354 0.79543 0.78655 0.77902 1.17782 1.19969 1.15745 0.93811 0.91377 0.91845 0.93812 0.92850 0.90001 0.93621 0.92502 0.89359 0.90213 0.90276 0.92951 0.89516 0.90500 0.89452 0.89412 0.88196 0.92046 0.92580 0.92832 0.83067 0.87750 0.89906 0.77458 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.96 71.98 0.72 -1.75 16 2 C 0.05 0.93 5.31 86.31 0.46 1.39 16 3 N -0.54 -9.61 4.21 -875.49 -3.68 -13.29 16 4 C 0.06 0.64 5.30 86.32 0.46 1.10 16 5 C -0.12 -1.11 6.09 30.65 0.19 -0.92 16 6 C -0.11 -0.86 6.00 30.67 0.18 -0.68 16 7 C -0.10 -1.29 5.36 30.65 0.16 -1.13 16 8 C 0.08 1.17 1.61 44.20 0.07 1.24 16 9 H 0.08 0.88 5.96 -2.39 -0.01 0.87 16 10 C 0.51 11.39 5.59 87.66 0.49 11.88 16 11 O -0.56 -18.62 14.85 -3.03 -0.05 -18.66 16 12 N -0.61 -10.67 2.87 -846.77 -2.43 -13.11 16 13 C 0.07 0.51 10.18 127.77 1.30 1.81 16 14 C 0.12 2.62 5.67 86.38 0.49 3.11 16 15 C 0.06 1.41 6.01 86.30 0.52 1.92 16 16 N -0.69 -21.38 6.13 -517.95 -3.17 -24.56 16 17 C 0.07 2.11 6.17 85.55 0.53 2.63 16 18 C 0.45 20.87 7.82 87.66 0.69 21.55 16 19 O -0.61 -34.93 15.78 -3.06 -0.05 -34.98 16 20 N -0.59 -28.47 5.09 -306.99 -1.56 -30.03 16 21 C -0.33 -19.72 10.16 84.04 0.85 -18.86 16 22 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 24 N -0.93 -56.82 13.96 21.66 0.30 -56.52 16 25 Si 0.97 39.23 27.74 68.60 1.90 41.13 16 26 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.96 6.65 -2.39 -0.02 0.94 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 0.67 8.06 -2.38 -0.02 0.66 16 33 H 0.05 1.34 5.63 -2.39 -0.01 1.33 16 34 H 0.08 0.93 6.49 -2.39 -0.02 0.91 16 35 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 42 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.09 0.50 8.07 -2.39 -0.02 0.48 16 44 H 0.09 0.40 5.82 -2.39 -0.01 0.39 16 45 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16 46 H 0.06 1.79 7.42 -2.39 -0.02 1.77 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.35 10.85 8.43 -89.70 -0.76 10.09 16 50 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 51 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.39 15.57 5.76 -92.71 -0.53 15.03 16 53 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -85.46 414.05 -1.61 -87.07 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.44 Total: 40.04 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 7.57 Total: 22.91 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -10.55 Total: -137.50 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.09 Total: -53.64 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -85.46 -1.61 -87.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664395755.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.878 kcal (2) G-P(sol) polarization free energy of solvation -85.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds