Wall clock time and date at job start Sat Apr 11 2020 06:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47528 * 2 1 4 4 C 1.46906 * 110.99814 * 293.95568 * 3 2 1 5 5 C 1.46905 * 111.00158 * 170.00206 * 3 2 1 6 6 C 1.52997 * 109.47053 * 189.99961 * 5 3 2 7 7 C 1.50704 * 109.47070 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99935 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99944 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99657 * 180.02562 * 9 7 6 12 12 H 1.08995 * 110.29154 * 0.67231 * 11 9 7 13 13 C 1.54270 * 110.32356 * 238.54631 * 11 9 7 14 14 C 1.54377 * 105.05843 * 241.10582 * 13 11 9 15 15 N 1.48555 * 104.59719 * 23.85308 * 14 13 11 16 16 C 1.46896 * 110.99852 * 200.95934 * 15 14 13 17 17 C 1.50706 * 109.47182 * 290.12547 * 16 15 14 18 18 O 1.21287 * 119.99590 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99812 * 180.02562 * 17 16 15 20 20 C 1.37103 * 119.99613 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00035 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00004 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99960 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00363 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46761 * 90.00258 * 24 22 20 26 26 H 1.48500 * 109.47443 * 210.00474 * 24 22 20 27 27 H 1.48505 * 109.46639 * 330.00444 * 24 22 20 28 28 C 1.48557 * 104.22253 * 320.51530 * 15 14 13 29 29 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46792 * 299.99900 * 1 2 3 31 31 H 1.09001 * 109.46841 * 59.99659 * 1 2 3 32 32 H 1.09009 * 109.46667 * 239.99818 * 2 1 3 33 33 H 1.09002 * 109.47365 * 120.00315 * 2 1 3 34 34 H 1.08992 * 109.47459 * 59.99744 * 4 3 2 35 35 H 1.09004 * 109.47040 * 179.97438 * 4 3 2 36 36 H 1.09000 * 109.47033 * 299.99847 * 4 3 2 37 37 H 1.09002 * 109.46783 * 309.99945 * 5 3 2 38 38 H 1.09005 * 109.46676 * 69.99987 * 5 3 2 39 39 H 1.09002 * 109.47313 * 299.99660 * 6 5 3 40 40 H 1.08994 * 109.47205 * 59.99990 * 6 5 3 41 41 H 1.08997 * 109.47187 * 89.99631 * 10 9 7 42 42 H 1.09004 * 109.46745 * 209.99907 * 10 9 7 43 43 H 1.08993 * 109.46963 * 329.99412 * 10 9 7 44 44 H 1.09000 * 110.31664 * 0.02562 * 13 11 9 45 45 H 1.08999 * 110.32420 * 122.20359 * 13 11 9 46 46 H 1.09006 * 110.40662 * 142.63496 * 14 13 11 47 47 H 1.09000 * 110.41020 * 264.95225 * 14 13 11 48 48 H 1.09003 * 109.47382 * 50.12382 * 16 15 14 49 49 H 1.09006 * 109.47275 * 170.12617 * 16 15 14 50 50 H 0.96995 * 120.00378 * 0.02562 * 19 17 16 51 51 H 0.96999 * 120.00034 * 180.02562 * 23 22 20 52 52 H 1.09000 * 110.41063 * 280.70688 * 28 15 14 53 53 H 1.09000 * 110.41204 * 158.26458 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0669 -1.2534 5 6 3.4687 1.4310 0.2381 6 6 3.9001 2.8790 0.4790 7 6 5.3863 2.9262 0.7239 8 8 6.0365 1.9025 0.7069 9 7 5.9931 4.1061 0.9608 10 6 5.2078 5.3426 0.9808 11 6 7.4380 4.1519 1.1983 12 1 7.8633 3.1503 1.1360 13 6 7.7347 4.7751 2.5780 14 6 8.5703 6.0377 2.2765 15 7 8.2147 6.3972 0.8796 16 6 9.2507 7.2445 0.2742 17 6 9.2302 8.6045 0.9234 18 8 8.4308 8.8442 1.8035 19 7 10.0994 9.5544 0.5252 20 6 10.0804 10.7917 1.1155 21 1 9.3692 11.0050 1.8997 22 6 10.9768 11.7709 0.7055 23 7 11.8426 11.5112 -0.2484 24 14 10.9515 13.4565 1.5101 25 1 11.8661 13.4603 2.6800 26 1 11.3968 14.4796 0.5303 27 1 9.5712 13.7695 1.9598 28 6 8.1193 5.0905 0.1794 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 0.5867 2.0794 -1.3703 35 1 2.0443 3.0904 -1.2266 36 1 2.1202 1.5370 -2.0930 37 1 3.7123 0.8288 1.1134 38 1 3.9926 1.0357 -0.6322 39 1 3.6564 3.4812 -0.3963 40 1 3.3761 3.2742 1.3492 41 1 4.8511 5.5302 1.9935 42 1 5.8322 6.1748 0.6555 43 1 4.3560 5.2429 0.3082 44 1 6.8052 5.0464 3.0785 45 1 8.3071 4.0800 3.1922 46 1 8.2992 6.8445 2.9575 47 1 9.6348 5.8167 2.3548 48 1 10.2282 6.7857 0.4229 49 1 9.0569 7.3487 -0.7935 50 1 10.7380 9.3629 -0.1794 51 1 12.4687 12.1947 -0.5344 52 1 9.1133 4.7208 -0.0725 53 1 7.5087 5.1841 -0.7187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665677237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:01 Heat of formation + Delta-G solvation = -74.203888 kcal Electronic energy + Delta-G solvation = -29978.309907 eV Core-core repulsion = 25884.422678 eV Total energy + Delta-G solvation = -4093.887230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44167 -40.35891 -39.22021 -38.51123 -36.23654 -35.75919 -33.57139 -33.25181 -32.36995 -30.45408 -29.57056 -28.45279 -27.71381 -27.20837 -25.95219 -24.10739 -22.47301 -22.01084 -21.45887 -20.92501 -19.88120 -19.84756 -18.44300 -17.74963 -17.48705 -17.10486 -16.80220 -16.54343 -16.29843 -16.13342 -15.88077 -15.52742 -15.51618 -15.15615 -14.94279 -14.71536 -14.24379 -14.04857 -13.90740 -13.65621 -13.50336 -13.25723 -13.15086 -13.03577 -12.98474 -12.92770 -12.81288 -12.71651 -12.68149 -12.62504 -12.39396 -12.25945 -12.13740 -12.11123 -11.82113 -11.81015 -11.74110 -11.45268 -10.80858 -10.32057 -9.98527 -9.67095 -9.36612 -9.34161 -8.44774 -5.93094 1.38834 1.42625 1.55049 1.59731 1.96014 2.08451 2.29487 2.81112 2.94236 3.22184 3.39116 3.53043 3.72335 3.81454 3.90657 4.07844 4.13358 4.16447 4.25255 4.30052 4.30305 4.37589 4.43680 4.47247 4.53985 4.56347 4.61835 4.62695 4.64108 4.67300 4.75149 4.77145 4.87312 4.90549 4.95840 5.02282 5.05363 5.07965 5.13985 5.14261 5.19305 5.38209 5.42725 5.55353 5.83350 5.87614 6.04293 6.07846 6.10050 6.43876 6.62767 7.14739 7.15325 7.59256 8.14902 8.72673 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.001755 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.864532 B =15952.206232 C =16390.262380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.549 5.549 4 C 0.015 3.985 5 C 0.077 3.923 6 C -0.125 4.125 7 C 0.513 3.487 8 O -0.587 6.587 9 N -0.599 5.599 10 C 0.073 3.927 11 C 0.141 3.859 12 H 0.101 0.899 13 C -0.122 4.122 14 C 0.040 3.960 15 N -0.495 5.495 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.026 3.974 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.069 0.931 38 H 0.027 0.973 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.069 0.931 49 H 0.109 0.891 50 H 0.395 0.605 51 H 0.276 0.724 52 H 0.065 0.935 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.937 -20.589 -2.441 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.274 5.274 4 C -0.133 4.133 5 C -0.052 4.052 6 C -0.165 4.165 7 C 0.303 3.697 8 O -0.468 6.468 9 N -0.331 5.331 10 C -0.069 4.069 11 C 0.036 3.964 12 H 0.119 0.881 13 C -0.161 4.161 14 C -0.089 4.089 15 N -0.219 5.219 16 C -0.086 4.086 17 C 0.232 3.768 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.102 4.102 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.127 0.873 50 H 0.229 0.771 51 H 0.086 0.914 52 H 0.084 0.916 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.727 -20.267 -1.609 26.974 hybrid contribution 1.972 0.192 -0.629 2.079 sum -15.755 -20.075 -2.238 25.617 Atomic orbital electron populations 1.21759 0.93615 1.02273 1.02439 1.22154 0.97041 0.88178 1.00749 1.62045 1.12870 1.16751 1.35686 1.22569 1.02360 0.99444 0.88938 1.21690 0.87197 0.95658 1.00632 1.21623 0.90049 0.99030 1.05805 1.21139 0.91082 0.82371 0.75109 1.90661 1.67899 1.34538 1.53671 1.47954 1.07828 1.07720 1.69555 1.21979 0.96469 0.85884 1.02603 1.21720 0.80821 0.99698 0.94156 0.88061 1.22630 1.00822 0.95870 0.96729 1.23044 0.97607 0.97186 0.91015 1.65113 1.42251 1.12222 1.02361 1.21932 0.95187 0.91265 1.00203 1.20671 0.82939 0.87290 0.85898 1.90476 1.41811 1.82399 1.35099 1.41933 1.32589 1.11297 1.35578 1.19652 1.18153 0.89420 1.18780 0.90241 1.26005 0.95092 1.03175 0.97007 1.69674 1.20700 1.36625 1.29286 0.84947 0.78527 0.77028 0.77958 1.19775 1.19686 1.19734 1.23520 1.00639 0.88386 0.97674 0.91279 0.92206 0.92305 0.95080 0.90956 0.90107 0.90377 0.95880 0.91284 0.95449 0.87003 0.86748 0.92236 0.90213 0.88954 0.90526 0.89432 0.91523 0.93973 0.91311 0.87282 0.77140 0.91416 0.91644 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.84 71.98 0.71 -0.72 16 2 C 0.05 0.61 5.68 86.30 0.49 1.10 16 3 N -0.55 -8.02 4.76 -922.41 -4.39 -12.41 16 4 C 0.01 0.17 9.13 127.69 1.17 1.34 16 5 C 0.08 1.32 4.25 86.30 0.37 1.69 16 6 C -0.13 -1.92 4.18 29.85 0.12 -1.80 16 7 C 0.51 11.28 7.67 87.66 0.67 11.95 16 8 O -0.59 -17.12 15.34 -3.03 -0.05 -17.16 16 9 N -0.60 -12.60 2.74 -817.58 -2.24 -14.84 16 10 C 0.07 1.34 9.30 127.77 1.19 2.53 16 11 C 0.14 3.22 3.47 45.89 0.16 3.38 16 12 H 0.10 2.47 6.96 -2.39 -0.02 2.45 16 13 C -0.12 -2.88 6.48 31.49 0.20 -2.67 16 14 C 0.04 1.19 5.80 86.45 0.50 1.69 16 15 N -0.50 -14.90 3.94 -886.04 -3.49 -18.39 16 16 C 0.05 1.52 5.30 85.56 0.45 1.97 16 17 C 0.44 20.55 7.58 87.66 0.66 21.22 16 18 O -0.61 -32.62 14.42 -3.05 -0.04 -32.66 16 19 N -0.58 -29.10 5.29 -306.99 -1.62 -30.72 16 20 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 24 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 C 0.03 0.61 5.42 86.45 0.47 1.08 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.54 6.55 -2.39 -0.02 0.53 16 32 H 0.03 0.42 8.12 -2.38 -0.02 0.40 16 33 H 0.07 0.96 7.93 -2.39 -0.02 0.94 16 34 H 0.08 0.79 6.47 -2.39 -0.02 0.78 16 35 H 0.08 0.79 6.30 -2.38 -0.02 0.77 16 36 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.07 1.35 7.89 -2.39 -0.02 1.33 16 38 H 0.03 0.55 8.08 -2.38 -0.02 0.53 16 39 H 0.11 1.33 5.73 -2.39 -0.01 1.31 16 40 H 0.11 1.53 8.11 -2.39 -0.02 1.51 16 41 H 0.06 1.06 7.91 -2.39 -0.02 1.04 16 42 H 0.08 1.89 6.27 -2.38 -0.01 1.87 16 43 H 0.09 1.18 6.44 -2.39 -0.02 1.17 16 44 H 0.08 1.84 7.24 -2.39 -0.02 1.83 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 2.48 6.91 -2.38 -0.02 2.46 16 47 H 0.04 1.23 7.83 -2.39 -0.02 1.21 16 48 H 0.07 2.06 7.88 -2.39 -0.02 2.05 16 49 H 0.11 3.21 8.13 -2.38 -0.02 3.19 16 50 H 0.39 19.03 7.90 -92.71 -0.73 18.30 16 51 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 52 H 0.07 1.39 8.00 -2.39 -0.02 1.37 16 53 H 0.09 2.04 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -68.97 412.40 -0.91 -69.88 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.17 Total: 36.03 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 8.45 Total: 24.79 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -11.46 Total: -125.53 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.09 Total: -49.83 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -68.97 -0.91 -69.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665677237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.324 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds