Wall clock time and date at job start Sat Apr 11 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46784 * 2 1 4 4 C 1.52997 * 109.46817 * 120.00250 * 2 1 3 5 5 C 1.53001 * 109.46900 * 184.99912 * 4 2 1 6 6 N 1.46500 * 109.47139 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99852 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00187 * 0.02562 * 7 6 5 9 9 C 1.50709 * 119.99717 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.46176 * 320.02719 * 9 7 6 11 11 C 1.53037 * 109.45728 * 80.00307 * 9 7 6 12 12 C 1.53123 * 109.27398 * 179.19343 * 11 9 7 13 13 C 1.53120 * 109.21163 * 302.31409 * 12 11 9 14 14 C 1.53166 * 109.20873 * 57.62805 * 13 12 11 15 15 N 1.46845 * 109.55463 * 300.85535 * 14 13 12 16 16 C 1.46900 * 111.00045 * 185.84196 * 15 14 13 17 17 N 1.46898 * 109.46876 * 240.00294 * 2 1 3 18 18 C 1.46896 * 111.00150 * 85.00331 * 17 2 1 19 19 C 1.50700 * 109.47051 * 179.97438 * 18 17 2 20 20 O 1.21293 * 120.00011 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99813 * 180.02562 * 19 18 17 22 22 C 1.37109 * 119.99800 * 180.02562 * 21 19 18 23 23 H 1.07994 * 120.00061 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99735 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99932 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99658 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47253 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46644 * 120.00079 * 26 24 22 29 29 H 1.48499 * 109.46967 * 239.99620 * 26 24 22 30 30 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47216 * 300.00026 * 1 2 3 32 32 H 1.09001 * 109.47223 * 60.00158 * 1 2 3 33 33 H 1.08997 * 109.47099 * 65.00047 * 4 2 1 34 34 H 1.08998 * 109.47097 * 305.00073 * 4 2 1 35 35 H 1.09007 * 109.47070 * 60.00085 * 5 4 2 36 36 H 1.08998 * 109.47378 * 299.99989 * 5 4 2 37 37 H 0.96997 * 119.99953 * 0.02562 * 6 5 4 38 38 H 1.08996 * 109.50616 * 59.25652 * 11 9 7 39 39 H 1.08993 * 109.53667 * 299.14915 * 11 9 7 40 40 H 1.09002 * 109.52319 * 62.25202 * 12 11 9 41 41 H 1.08995 * 109.52318 * 182.37884 * 12 11 9 42 42 H 1.09004 * 109.49930 * 177.63007 * 13 12 11 43 43 H 1.08997 * 109.50353 * 297.74224 * 13 12 11 44 44 H 1.09003 * 109.44926 * 180.83262 * 14 13 12 45 45 H 1.09002 * 109.44150 * 60.87652 * 14 13 12 46 46 H 1.09001 * 109.46947 * 295.78934 * 16 15 14 47 47 H 1.08998 * 109.47492 * 55.79243 * 16 15 14 48 48 H 1.09000 * 109.47235 * 175.79803 * 16 15 14 49 49 H 1.00909 * 110.99831 * 208.95516 * 17 2 1 50 50 H 1.09001 * 109.46779 * 299.99274 * 18 17 2 51 51 H 1.08996 * 109.47278 * 59.99642 * 18 17 2 52 52 H 0.96997 * 120.00096 * 359.97438 * 21 19 18 53 53 H 0.97002 * 119.99791 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0530 -1.3035 2.5101 7 6 5.3740 -1.3396 2.7753 8 8 6.1584 -0.8005 2.0237 9 6 5.8763 -2.0501 4.0059 10 1 5.2036 -1.8512 4.8401 11 6 5.9272 -3.5563 3.7398 12 6 6.4570 -4.2720 4.9855 13 6 7.8393 -3.7150 5.3369 14 6 7.7326 -2.2029 5.5560 15 7 7.2222 -1.5643 4.3361 16 6 7.2374 -0.1008 4.4621 17 7 2.0196 -0.6924 -1.1995 18 6 2.0825 0.2227 -2.3468 19 6 2.5885 -0.5214 -3.5557 20 8 2.8696 -1.6982 -3.4697 21 7 2.7296 0.1210 -4.7321 22 6 3.1895 -0.5561 -5.8321 23 1 3.4390 -1.6041 -5.7557 24 6 3.3345 0.1060 -7.0450 25 7 3.0304 1.3811 -7.1379 26 14 3.9617 -0.8163 -8.5434 27 1 4.2312 -2.2300 -8.1775 28 1 2.9379 -0.7691 -9.6180 29 1 5.2152 -0.1828 -9.0258 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 1.2055 34 1 1.6053 -0.2618 2.1369 35 1 3.8532 0.4370 1.3574 36 1 3.9994 -1.0728 0.4260 37 1 3.4257 -1.7351 3.1110 38 1 6.5891 -3.7548 2.8970 39 1 4.9258 -3.9198 3.5096 40 1 5.7746 -4.1057 5.8190 41 1 6.5348 -5.3407 4.7861 42 1 8.2029 -4.1915 6.2474 43 1 8.5313 -3.9161 4.5191 44 1 8.7175 -1.7999 5.7920 45 1 7.0509 -2.0033 6.3829 46 1 6.5521 0.2028 5.2535 47 1 8.2459 0.2324 4.7071 48 1 6.9253 0.3483 3.5193 49 1 2.9173 -1.1205 -1.0288 50 1 1.0871 0.6163 -2.5525 51 1 2.7588 1.0462 -2.1182 52 1 2.5052 1.0621 -4.8007 53 1 3.1313 1.8433 -7.9848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674204424.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:40 Heat of formation + Delta-G solvation = -105.168121 kcal Electronic energy + Delta-G solvation = -29800.358751 eV Core-core repulsion = 25705.128812 eV Total energy + Delta-G solvation = -4095.229939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45454 -40.26489 -39.19244 -38.27374 -36.09678 -35.74976 -34.42839 -33.35928 -32.85989 -32.04270 -29.82301 -28.10169 -27.78157 -25.97187 -25.24791 -24.03320 -23.51361 -21.85509 -21.24076 -21.07426 -20.61394 -19.93862 -18.33290 -17.85342 -17.44564 -16.95194 -16.86963 -16.51078 -16.28602 -16.16397 -15.80843 -15.63435 -15.45868 -15.24235 -15.20930 -14.82186 -14.39895 -14.19134 -14.07085 -13.97522 -13.77377 -13.53090 -13.36350 -13.17535 -13.08841 -12.88621 -12.74492 -12.59399 -12.43548 -12.40893 -12.23945 -12.17596 -12.11532 -11.90952 -11.71790 -11.63919 -11.53304 -11.35198 -10.65111 -10.36839 -10.15724 -10.03700 -9.34174 -9.29886 -8.48718 -5.97598 1.35010 1.39937 1.54167 1.54681 2.00145 2.02559 2.27775 2.91208 2.91991 3.18165 3.49092 3.60169 3.78993 3.79608 3.95257 3.95939 4.03746 4.11559 4.14434 4.27522 4.28941 4.42225 4.43024 4.47184 4.47987 4.52924 4.56002 4.59804 4.67426 4.75014 4.79636 4.94655 4.95721 4.99081 5.02712 5.03194 5.04724 5.17260 5.19122 5.24120 5.38885 5.39097 5.44029 5.47197 5.89992 5.92268 6.10149 6.12051 6.38969 6.54000 6.57838 7.10408 7.23316 7.53546 8.08994 8.68987 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.001989 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.481182 B =14072.785950 C =15229.784596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.051 0.949 4 C -0.116 4.116 5 C 0.118 3.882 6 N -0.713 5.713 7 C 0.507 3.493 8 O -0.569 6.569 9 C 0.077 3.923 10 H 0.087 0.913 11 C -0.108 4.108 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.057 3.943 15 N -0.547 5.547 16 C 0.019 3.981 17 N -0.680 5.680 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.015 4.015 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.274 1.274 28 H -0.268 1.268 29 H -0.271 1.271 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.418 0.582 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.340 0.660 50 H 0.105 0.895 51 H 0.061 0.939 52 H 0.396 0.604 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -3.647 31.682 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.069 0.931 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.366 5.366 7 C 0.294 3.706 8 O -0.447 6.447 9 C -0.034 4.034 10 H 0.105 0.895 11 C -0.147 4.147 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.070 4.070 15 N -0.273 5.273 16 C -0.128 4.128 17 N -0.314 5.314 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.161 0.839 50 H 0.123 0.877 51 H 0.079 0.921 52 H 0.230 0.770 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.738 -4.271 30.494 30.800 hybrid contribution 0.410 0.932 -0.390 1.090 sum 1.148 -3.339 30.104 30.310 Atomic orbital electron populations 1.21776 0.93061 1.02386 1.02105 1.21641 0.97024 0.96042 0.88045 0.93098 1.21882 0.91934 1.03040 0.98552 1.21318 0.95502 0.96641 0.87179 1.45840 1.07182 1.56730 1.26857 1.21083 0.82280 0.79608 0.87635 1.90703 1.56415 1.46781 1.50788 1.21624 0.91147 0.96303 0.94349 0.89536 1.21592 1.02670 0.90746 0.99653 1.21571 0.96766 1.00092 0.96737 1.21670 0.97681 0.94038 1.02396 1.22234 1.00420 0.95311 0.89079 1.61586 1.22206 1.06524 1.36944 1.22471 1.02225 0.87172 1.00966 1.60266 1.34539 1.32604 1.04017 1.21579 1.02141 0.93708 0.89364 1.20926 0.83221 0.88013 0.85486 1.90485 1.56655 1.18284 1.85603 1.41946 1.58265 1.12571 1.08280 1.19700 1.42125 0.95923 0.88592 0.90443 1.26072 0.97229 0.96681 1.01432 1.69679 1.48606 1.09676 1.28119 0.84854 0.78208 0.77974 0.77191 1.19883 1.19339 1.19581 0.92492 0.89834 0.93551 0.89797 0.87202 0.92408 0.94281 0.74514 0.93126 0.89270 0.90127 0.90355 0.89202 0.92644 0.90082 0.93396 0.94664 0.90644 0.92328 0.83950 0.87655 0.92147 0.76976 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.41 71.98 0.68 -1.89 16 2 C 0.08 1.78 2.65 44.92 0.12 1.90 16 3 H 0.05 1.07 7.80 -2.39 -0.02 1.05 16 4 C -0.12 -1.86 4.92 30.59 0.15 -1.71 16 5 C 0.12 2.53 5.50 86.38 0.48 3.00 16 6 N -0.71 -12.48 5.56 -463.04 -2.57 -15.05 16 7 C 0.51 11.89 6.26 87.66 0.55 12.44 16 8 O -0.57 -19.50 14.53 -3.02 -0.04 -19.55 16 9 C 0.08 1.30 2.24 44.19 0.10 1.40 16 10 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 11 C -0.11 -1.59 5.36 30.65 0.16 -1.43 16 12 C -0.11 -1.13 6.00 30.68 0.18 -0.94 16 13 C -0.12 -1.35 6.11 30.69 0.19 -1.16 16 14 C 0.06 0.73 5.47 86.37 0.47 1.20 16 15 N -0.55 -10.59 4.51 -901.32 -4.06 -14.65 16 16 C 0.02 0.38 9.10 127.69 1.16 1.54 16 17 N -0.68 -21.85 5.93 -495.59 -2.94 -24.79 16 18 C 0.06 2.33 5.97 85.56 0.51 2.84 16 19 C 0.44 21.79 7.82 87.66 0.69 22.47 16 20 O -0.62 -36.19 15.78 -3.07 -0.05 -36.24 16 21 N -0.57 -30.69 5.29 -306.98 -1.62 -32.32 16 22 C -0.33 -19.67 9.68 84.04 0.81 -18.86 16 23 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.92 13.05 21.66 0.28 -50.64 16 26 Si 0.99 44.30 29.55 68.60 2.03 46.33 16 27 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.04 1.13 6.43 -2.39 -0.02 1.11 16 37 H 0.42 4.03 8.47 -92.71 -0.79 3.24 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 45 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 48 H 0.06 1.52 5.63 -2.39 -0.01 1.50 16 49 H 0.34 12.01 6.17 -89.69 -0.55 11.46 16 50 H 0.11 3.41 7.44 -2.39 -0.02 3.39 16 51 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 52 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 53 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -78.96 418.46 -3.42 -82.39 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -1.15 Total: 44.05 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.72 Total: 20.47 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -10.92 Total: -137.45 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -0.09 Total: -55.78 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -78.96 -3.42 -82.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674204424.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.782 kcal (2) G-P(sol) polarization free energy of solvation -78.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds