Wall clock time and date at job start Sat Apr 11 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.46968 * 2 1 4 4 C 1.46900 * 110.99953 * 293.95472 * 3 2 1 5 5 C 1.46896 * 110.99884 * 170.00017 * 3 2 1 6 6 C 1.53002 * 109.47243 * 189.99718 * 5 3 2 7 7 C 1.50706 * 109.46925 * 180.02562 * 6 5 3 8 8 O 1.21279 * 120.00072 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99858 * 0.02562 * 9 7 6 11 11 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 12 12 C 1.53000 * 109.46986 * 90.00200 * 11 9 7 13 13 H 1.08997 * 112.74591 * 75.77472 * 12 11 9 14 14 C 1.53517 * 113.47892 * 206.62320 * 12 11 9 15 15 C 1.53509 * 83.57787 * 140.78815 * 14 12 11 16 16 N 1.47477 * 87.93455 * 333.97710 * 15 14 12 17 17 C 1.46900 * 111.00265 * 138.70097 * 16 15 14 18 18 C 1.50693 * 109.47141 * 74.03026 * 17 16 15 19 19 O 1.21295 * 120.00266 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00173 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00407 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99860 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00300 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99867 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00150 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46872 * 89.99900 * 25 23 21 27 27 H 1.48498 * 109.47506 * 210.00322 * 25 23 21 28 28 H 1.48505 * 109.47148 * 330.00303 * 25 23 21 29 29 H 1.09000 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47183 * 300.00018 * 1 2 3 31 31 H 1.08996 * 109.47490 * 59.99650 * 1 2 3 32 32 H 1.09002 * 109.46666 * 240.00004 * 2 1 3 33 33 H 1.09000 * 109.46787 * 120.00203 * 2 1 3 34 34 H 1.09004 * 109.47324 * 296.04620 * 4 3 2 35 35 H 1.09000 * 109.47134 * 56.04693 * 4 3 2 36 36 H 1.09002 * 109.47308 * 176.05293 * 4 3 2 37 37 H 1.09004 * 109.47041 * 69.99929 * 5 3 2 38 38 H 1.09004 * 109.47535 * 309.99968 * 5 3 2 39 39 H 1.09000 * 109.46497 * 60.00307 * 6 5 3 40 40 H 1.09000 * 109.47312 * 300.00087 * 6 5 3 41 41 H 1.08999 * 109.47441 * 89.99653 * 10 9 7 42 42 H 1.09005 * 109.47121 * 209.99861 * 10 9 7 43 43 H 1.08997 * 109.47160 * 329.99513 * 10 9 7 44 44 H 1.09000 * 109.47710 * 210.00590 * 11 9 7 45 45 H 1.09000 * 109.46883 * 330.00634 * 11 9 7 46 46 H 1.09000 * 114.17068 * 254.44187 * 14 12 11 47 47 H 1.09003 * 114.16490 * 27.14336 * 14 12 11 48 48 H 1.08995 * 113.47969 * 219.21320 * 15 14 12 49 49 H 1.09006 * 113.52607 * 88.74942 * 15 14 12 50 50 H 1.09003 * 109.47413 * 194.03159 * 17 16 15 51 51 H 1.09000 * 109.47124 * 314.02964 * 17 16 15 52 52 H 0.97004 * 119.99868 * 0.02562 * 20 18 17 53 53 H 0.97004 * 119.99890 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 -1.2533 5 6 3.4684 1.4311 0.2381 6 6 3.8998 2.8792 0.4790 7 6 5.3863 2.9265 0.7227 8 8 6.0366 1.9030 0.7049 9 7 5.9931 4.1064 0.9594 10 6 5.2076 5.3429 0.9803 11 6 7.4380 4.1525 1.1968 12 6 8.1681 4.3355 -0.1352 13 1 8.1041 5.3555 -0.5142 14 6 9.5957 3.7710 -0.1328 15 6 9.2371 3.3250 -1.5572 16 7 7.8227 3.3126 -1.1400 17 6 6.9597 3.8742 -2.1878 18 6 6.8286 2.8831 -3.3153 19 8 7.3984 1.8141 -3.2525 20 7 6.0782 3.1844 -4.3936 21 6 5.9593 2.2829 -5.4196 22 1 6.4667 1.3311 -5.3637 23 6 5.1861 2.5938 -6.5315 24 7 5.0718 1.7294 -7.5147 25 14 4.3092 4.2402 -6.6286 26 1 5.1983 5.2370 -7.2775 27 1 3.0656 4.0925 -7.4266 28 1 3.9666 4.7002 -5.2588 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1769 1.5790 -2.0860 35 1 0.5918 2.0179 -1.4052 36 1 1.9824 3.1098 -1.1989 37 1 3.9924 1.0359 -0.6321 38 1 3.7122 0.8290 1.1134 39 1 3.3758 3.2743 1.3493 40 1 3.6562 3.4813 -0.3963 41 1 4.8516 5.5302 1.9933 42 1 5.8315 6.1753 0.6546 43 1 4.3552 5.2432 0.3083 44 1 7.6713 4.9880 1.8569 45 1 7.7595 3.2209 1.6624 46 1 10.3760 4.5307 -0.0860 47 1 9.7494 2.9493 0.5667 48 1 9.6229 2.3383 -1.8134 49 1 9.4592 4.0747 -2.3168 50 1 5.9741 4.0848 -1.7727 51 1 7.3999 4.7974 -2.5649 52 1 5.6228 4.0394 -4.4440 53 1 4.5317 1.9463 -8.2907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688893786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:35 Heat of formation + Delta-G solvation = -42.112877 kcal Electronic energy + Delta-G solvation = -32029.618953 eV Core-core repulsion = 27937.123294 eV Total energy + Delta-G solvation = -4092.495659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.70815 -40.53237 -39.66810 -38.66618 -36.33836 -36.02036 -33.83085 -33.45657 -32.17433 -30.76737 -29.54070 -27.73564 -27.66198 -27.07280 -25.19257 -24.77153 -23.21020 -21.76661 -21.36621 -20.61024 -20.33184 -19.90297 -18.13777 -17.82072 -17.31610 -17.19094 -16.87495 -16.72114 -16.57346 -16.19442 -15.99551 -15.55776 -15.31672 -15.24547 -14.88452 -14.63231 -14.45790 -14.21733 -14.04877 -13.91310 -13.72739 -13.55981 -13.23418 -13.05833 -13.00136 -12.89564 -12.82112 -12.71830 -12.56346 -12.48093 -12.31066 -12.24603 -12.03792 -11.94878 -11.85372 -11.79863 -11.58950 -11.48067 -10.61224 -10.49411 -10.29859 -9.75967 -9.48153 -9.31728 -8.45464 -6.06973 1.23719 1.30714 1.39882 1.85396 1.90195 2.11389 2.18700 2.67633 2.91326 3.09466 3.22691 3.56560 3.79009 3.83456 3.85972 4.05391 4.05950 4.10597 4.21827 4.25276 4.26480 4.30343 4.38133 4.41074 4.47671 4.49300 4.55147 4.56905 4.58809 4.63743 4.81231 4.82051 4.85146 4.92312 4.95846 4.97654 4.98749 5.04408 5.06115 5.08757 5.25959 5.32140 5.43028 5.49701 5.78846 5.87475 5.94141 5.98984 6.14531 6.54678 6.56845 6.83495 7.33503 7.44256 7.92560 8.72761 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006360 B = 0.005392 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4401.429373 B = 5191.839493 C = 8321.184494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 N -0.532 5.532 4 C 0.015 3.985 5 C 0.075 3.925 6 C -0.123 4.123 7 C 0.505 3.495 8 O -0.564 6.564 9 N -0.615 5.615 10 C 0.070 3.930 11 C 0.136 3.864 12 C 0.012 3.988 13 H 0.104 0.896 14 C -0.114 4.114 15 C -0.003 4.003 16 N -0.457 5.457 17 C 0.029 3.971 18 C 0.450 3.550 19 O -0.609 6.609 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.047 0.953 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.254 1.254 27 H -0.272 1.272 28 H -0.230 1.230 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.013 0.987 33 H 0.077 0.923 34 H -0.001 1.001 35 H 0.089 0.911 36 H 0.084 0.916 37 H -0.002 1.002 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.060 0.940 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.070 0.930 50 H 0.099 0.901 51 H 0.085 0.915 52 H 0.388 0.612 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 16.424 21.505 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 N -0.256 5.256 4 C -0.133 4.133 5 C -0.053 4.053 6 C -0.163 4.163 7 C 0.293 3.707 8 O -0.442 6.442 9 N -0.348 5.348 10 C -0.072 4.072 11 C 0.013 3.987 12 C -0.098 4.098 13 H 0.122 0.878 14 C -0.152 4.152 15 C -0.132 4.132 16 N -0.180 5.180 17 C -0.103 4.103 18 C 0.237 3.763 19 O -0.493 6.493 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.065 0.935 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.178 1.178 27 H -0.196 1.196 28 H -0.154 1.154 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.096 0.904 34 H 0.018 0.982 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.016 0.984 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.078 0.922 46 H 0.128 0.872 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.117 0.883 51 H 0.103 0.897 52 H 0.224 0.776 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.307 14.724 21.909 26.925 hybrid contribution 0.406 0.014 -2.227 2.264 sum -4.901 14.738 19.682 25.072 Atomic orbital electron populations 1.21739 0.92691 1.02455 1.02731 1.22208 0.97763 0.88449 1.00245 1.62200 1.12452 1.16332 1.34664 1.22574 1.02244 0.99726 0.88799 1.21686 0.87172 0.96923 0.99546 1.21578 0.91708 0.97646 1.05336 1.20884 0.90342 0.83450 0.75987 1.90751 1.67466 1.35137 1.50825 1.47800 1.08423 1.07304 1.71293 1.22092 0.96596 0.85164 1.03325 1.21482 0.78909 1.03371 0.94921 1.24041 0.95225 0.95791 0.94761 0.87792 1.23073 0.96179 1.01244 0.94740 1.23642 0.90581 1.00634 0.98383 1.68979 1.05412 1.35590 1.07987 1.22350 1.01241 0.94892 0.91793 1.20897 0.81883 0.89201 0.84274 1.90560 1.50425 1.27642 1.80676 1.42004 1.46189 1.17607 1.17500 1.18931 1.30458 0.99052 0.97283 0.93481 1.26144 0.97755 1.03443 0.93974 1.69815 1.40827 1.38066 1.08867 0.85377 0.78588 0.76991 0.80647 1.17832 1.19642 1.15351 0.91205 0.91018 0.92597 0.96884 0.90429 0.98209 0.89270 0.89770 0.98402 0.91005 0.85585 0.88368 0.90583 0.89057 0.90643 0.86165 0.92181 0.87178 0.89725 0.93659 0.91222 0.88292 0.89722 0.77646 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.84 71.98 0.71 -1.86 16 2 C 0.04 1.01 5.68 86.30 0.49 1.50 16 3 N -0.53 -13.57 4.76 -922.44 -4.39 -17.97 16 4 C 0.01 0.36 9.13 127.69 1.17 1.53 16 5 C 0.08 2.25 4.25 86.30 0.37 2.62 16 6 C -0.12 -2.85 4.18 29.85 0.12 -2.72 16 7 C 0.51 14.31 6.78 87.66 0.59 14.90 16 8 O -0.56 -22.58 14.99 -3.03 -0.05 -22.63 16 9 N -0.61 -11.95 2.74 -846.75 -2.32 -14.27 16 10 C 0.07 0.66 10.24 127.77 1.31 1.97 16 11 C 0.14 2.53 5.58 86.38 0.48 3.01 16 12 C 0.01 0.25 3.37 42.19 0.14 0.39 16 13 H 0.10 1.57 7.77 -2.39 -0.02 1.56 16 14 C -0.11 -2.42 8.00 30.94 0.25 -2.17 16 15 C 0.00 -0.10 6.71 83.58 0.56 0.46 16 16 N -0.46 -15.41 4.66 -906.65 -4.22 -19.64 16 17 C 0.03 0.99 5.31 85.55 0.45 1.45 16 18 C 0.45 22.22 7.62 87.65 0.67 22.89 16 19 O -0.61 -37.41 15.34 -3.08 -0.05 -37.45 16 20 N -0.59 -29.45 5.09 -306.98 -1.56 -31.02 16 21 C -0.33 -20.09 10.16 84.04 0.85 -19.24 16 22 H 0.05 3.47 7.39 -2.91 -0.02 3.45 16 23 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.94 -57.80 13.96 21.66 0.30 -57.49 16 25 Si 0.96 39.15 27.74 68.60 1.90 41.06 16 26 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.23 -7.78 6.52 99.48 0.65 -7.14 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.03 6.47 -2.39 -0.02 1.02 16 32 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16 33 H 0.08 1.81 7.93 -2.39 -0.02 1.79 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.09 1.85 6.30 -2.39 -0.02 1.84 16 36 H 0.08 1.78 6.47 -2.39 -0.02 1.76 16 37 H 0.00 -0.10 8.08 -2.38 -0.02 -0.12 16 38 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 39 H 0.13 2.13 8.11 -2.39 -0.02 2.11 16 40 H 0.10 2.09 5.81 -2.39 -0.01 2.07 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.09 0.50 8.07 -2.38 -0.02 0.49 16 43 H 0.07 0.68 6.44 -2.39 -0.02 0.66 16 44 H 0.12 1.17 8.07 -2.39 -0.02 1.15 16 45 H 0.06 1.50 7.16 -2.39 -0.02 1.48 16 46 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.97 7.94 -2.39 -0.02 1.95 16 48 H 0.04 1.81 8.13 -2.39 -0.02 1.79 16 49 H 0.07 2.05 7.70 -2.38 -0.02 2.03 16 50 H 0.10 3.01 7.68 -2.39 -0.02 2.99 16 51 H 0.09 2.30 7.56 -2.39 -0.02 2.28 16 52 H 0.39 15.89 5.76 -92.71 -0.53 15.35 16 53 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -92.51 416.22 -1.45 -93.96 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: 0.30 Total: 41.10 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 8.63 Total: 24.35 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -12.20 Total: -140.38 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: -0.09 Total: -60.08 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -92.51 -1.45 -93.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688893786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.850 kcal (2) G-P(sol) polarization free energy of solvation -92.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds