Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47155 * 2 1 4 4 C 1.46901 * 111.00051 * 66.04657 * 3 2 1 5 5 C 1.46895 * 111.00213 * 189.99760 * 3 2 1 6 6 C 1.52999 * 109.47696 * 169.99949 * 5 3 2 7 7 C 1.50698 * 109.47774 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99723 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99788 * 359.97438 * 9 7 6 11 11 C 1.46500 * 119.99903 * 180.02562 * 9 7 6 12 12 C 1.52994 * 109.47162 * 269.99702 * 11 9 7 13 13 H 1.09007 * 112.95862 * 287.14685 * 12 11 9 14 14 C 1.53934 * 113.76096 * 155.49645 * 12 11 9 15 15 C 1.53935 * 86.45688 * 221.80153 * 14 12 11 16 16 N 1.47961 * 113.85909 * 58.88682 * 12 11 9 17 17 C 1.46902 * 111.00005 * 251.91231 * 16 12 11 18 18 C 1.50702 * 109.47267 * 189.99947 * 17 16 12 19 19 O 1.21296 * 119.99494 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00134 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00203 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00145 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00446 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00369 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47000 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47035 * 120.00008 * 25 23 21 28 28 H 1.48500 * 109.47521 * 240.00386 * 25 23 21 29 29 H 1.09001 * 109.47139 * 300.00103 * 1 2 3 30 30 H 1.09006 * 109.46848 * 59.99629 * 1 2 3 31 31 H 1.08993 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47139 * 239.99897 * 2 1 3 33 33 H 1.08996 * 109.47101 * 119.99626 * 2 1 3 34 34 H 1.09005 * 109.47399 * 183.95548 * 4 3 2 35 35 H 1.09007 * 109.47185 * 303.95130 * 4 3 2 36 36 H 1.09002 * 109.47407 * 63.94984 * 4 3 2 37 37 H 1.08999 * 109.46937 * 50.00166 * 5 3 2 38 38 H 1.09001 * 109.47368 * 290.00384 * 5 3 2 39 39 H 1.09009 * 109.46858 * 60.00089 * 6 5 3 40 40 H 1.09001 * 109.47067 * 300.00619 * 6 5 3 41 41 H 1.08994 * 109.47497 * 269.99840 * 10 9 7 42 42 H 1.09002 * 109.47101 * 30.00410 * 10 9 7 43 43 H 1.09006 * 109.46610 * 150.00112 * 10 9 7 44 44 H 1.09002 * 109.46652 * 150.00111 * 11 9 7 45 45 H 1.08998 * 109.47142 * 30.00016 * 11 9 7 46 46 H 1.09002 * 113.73279 * 336.21344 * 14 12 11 47 47 H 1.09002 * 113.73078 * 107.39042 * 14 12 11 48 48 H 1.09001 * 113.76001 * 138.09365 * 15 14 12 49 49 H 1.09000 * 113.75996 * 269.45181 * 15 14 12 50 50 H 1.08997 * 109.47246 * 310.00098 * 17 16 12 51 51 H 1.09007 * 109.46957 * 69.99875 * 17 16 12 52 52 H 0.97001 * 119.99910 * 359.97438 * 20 18 17 53 53 H 0.96996 * 119.99994 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4312 -0.2381 6 6 3.8999 2.8791 -0.4791 7 6 5.3861 2.9264 -0.7239 8 8 6.0362 1.9027 -0.7078 9 7 5.9929 4.1063 -0.9608 10 6 5.2075 5.3428 -0.9809 11 6 7.4376 4.1522 -1.1994 12 6 8.1688 4.3348 0.1320 13 1 8.0651 5.3404 0.5396 14 6 9.6185 3.8171 0.1195 15 6 9.3258 3.2467 1.5190 16 7 7.8990 3.2624 1.1150 17 6 7.0477 3.7517 2.2076 18 6 6.9955 2.7197 3.3046 19 8 7.6069 1.6787 3.1874 20 7 6.2686 2.9530 4.4153 21 6 6.2215 2.0145 5.4134 22 1 6.7665 1.0878 5.3096 23 6 5.4725 2.2552 6.5587 24 7 4.8089 3.3823 6.6850 25 14 5.4078 0.9760 7.9184 26 1 6.2346 -0.1965 7.5348 27 1 5.9358 1.5632 9.1761 28 1 4.0021 0.5444 8.1256 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9824 3.1099 1.1988 35 1 0.5919 2.0180 1.4052 36 1 2.1769 1.5790 2.0860 37 1 3.7122 0.8290 -1.1134 38 1 3.9925 1.0359 0.6321 39 1 3.6562 3.4813 0.3963 40 1 3.3759 3.2744 -1.3493 41 1 4.8509 5.5304 -1.9936 42 1 4.3556 5.2431 -0.3082 43 1 5.8318 6.1751 -0.6555 44 1 7.6704 4.9878 -1.8594 45 1 7.7586 3.2206 -1.6655 46 1 9.8051 3.0533 -0.6353 47 1 10.3671 4.6094 0.1165 48 1 9.7280 2.2463 1.6784 49 1 9.5597 3.9348 2.3314 50 1 7.4604 4.6804 2.6018 51 1 6.0410 3.9327 1.8307 52 1 5.7793 3.7854 4.5087 53 1 4.2857 3.5502 7.4843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688893787.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -22.223226 kcal Electronic energy + Delta-G solvation = -31855.827917 eV Core-core repulsion = 27764.194738 eV Total energy + Delta-G solvation = -4091.633179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.31842 -39.17913 -37.73847 -37.46883 -35.27164 -33.86105 -32.41153 -31.29392 -30.58883 -29.69058 -28.54439 -26.76084 -26.21320 -25.65970 -23.76329 -23.58887 -22.21633 -20.69389 -19.41501 -19.19550 -18.87306 -17.85304 -17.09084 -16.24303 -16.15462 -15.83631 -15.54281 -15.39617 -15.18540 -14.65987 -14.50766 -14.18369 -14.05593 -13.74824 -13.61540 -13.50455 -13.18080 -12.90449 -12.62801 -12.53738 -12.41531 -12.16819 -12.04950 -11.84959 -11.79353 -11.63802 -11.53649 -11.42675 -11.21558 -11.20926 -11.04190 -10.85782 -10.78733 -10.66341 -10.42779 -10.32520 -10.18721 -9.47762 -9.42938 -8.73080 -8.31879 -8.29009 -8.07329 -7.91891 -6.39065 -3.79143 2.94672 3.07031 3.17104 3.27251 3.35148 3.93092 3.96313 4.09598 4.26974 4.66588 4.78296 4.90784 4.93151 5.01163 5.07419 5.07786 5.16922 5.18187 5.22331 5.26592 5.34292 5.39840 5.45206 5.51483 5.52094 5.58434 5.62675 5.63764 5.72654 5.75979 5.81068 5.83339 5.91103 5.92059 5.98139 6.00327 6.06445 6.11738 6.17732 6.21601 6.33693 6.44500 6.59911 6.83621 7.07108 7.07458 7.38472 7.54534 7.57949 8.09877 8.50429 8.65963 9.22117 9.58240 10.11483 10.79091 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006466 B = 0.004924 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4329.165949 B = 5684.586233 C = 9021.433363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.069 3.931 6 C -0.133 4.133 7 C 0.514 3.486 8 O -0.503 6.503 9 N -0.621 5.621 10 C 0.079 3.921 11 C 0.140 3.860 12 C 0.004 3.996 13 H 0.072 0.928 14 C -0.137 4.137 15 C 0.018 3.982 16 N -0.425 5.425 17 C 0.017 3.983 18 C 0.448 3.552 19 O -0.572 6.572 20 N -0.569 5.569 21 C -0.294 4.294 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.926 3.074 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.390 0.610 53 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 6.749 -16.817 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.133 4.133 5 C -0.059 4.059 6 C -0.173 4.173 7 C 0.300 3.700 8 O -0.376 6.376 9 N -0.356 5.356 10 C -0.064 4.064 11 C 0.017 3.983 12 C -0.107 4.107 13 H 0.090 0.910 14 C -0.176 4.176 15 C -0.111 4.111 16 N -0.147 5.147 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.455 6.455 20 N -0.206 5.206 21 C -0.423 4.423 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.754 3.246 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.111 0.889 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.097 0.903 52 H 0.223 0.777 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.259 5.149 -17.305 18.347 hybrid contribution 0.136 0.659 2.074 2.181 sum -3.123 5.808 -15.231 16.597 Atomic orbital electron populations 1.21796 0.94992 1.01373 1.02330 1.22066 0.95874 0.88935 1.01043 1.62071 1.13931 1.15941 1.34971 1.22499 1.01295 0.99375 0.90085 1.21807 0.86613 0.95343 1.02108 1.21628 0.92649 0.99315 1.03756 1.20484 0.89668 0.83194 0.76613 1.90769 1.66215 1.32742 1.47904 1.47718 1.07958 1.06960 1.73003 1.21759 0.96444 0.86690 1.01530 1.21319 0.79213 1.02836 0.94919 1.23965 0.95599 0.95201 0.95951 0.90994 1.23368 0.94866 1.00419 0.98929 1.23728 0.90289 1.02172 0.94917 1.68598 1.05524 1.32539 1.08083 1.22381 0.99321 0.96333 0.93452 1.19712 0.84465 0.88833 0.83725 1.90535 1.47534 1.27523 1.79868 1.41863 1.43707 1.19350 1.15707 1.19724 1.27785 0.99628 0.95203 0.88048 1.25213 0.96565 0.97416 0.98771 1.69618 1.31754 1.23976 1.29284 0.85845 0.78006 0.80490 0.80299 1.19263 1.20785 1.20782 0.92599 0.92044 0.92464 0.90897 0.94595 0.91352 0.91297 0.94837 0.90328 0.93281 0.89220 0.88768 0.92826 0.91090 0.91398 0.90713 0.89327 0.89148 0.91446 0.88928 0.92063 0.93598 0.90335 0.77744 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.84 37.16 0.37 -1.10 16 2 C 0.05 0.59 5.68 -3.83 -0.02 0.56 16 3 N -0.54 -7.08 4.76 -242.92 -1.16 -8.24 16 4 C 0.02 0.20 9.13 60.07 0.55 0.75 16 5 C 0.07 1.01 4.25 -3.83 -0.02 0.99 16 6 C -0.13 -1.69 4.18 -27.88 -0.12 -1.81 16 7 C 0.51 7.71 6.92 -10.99 -0.08 7.64 16 8 O -0.50 -9.84 15.00 5.55 0.08 -9.76 16 9 N -0.62 -7.42 2.85 -181.58 -0.52 -7.93 16 10 C 0.08 0.64 10.24 59.85 0.61 1.25 16 11 C 0.14 1.63 5.57 -4.04 -0.02 1.60 16 12 C 0.00 0.05 3.57 -66.65 -0.24 -0.19 16 13 H 0.07 0.85 7.79 -51.92 -0.40 0.45 16 14 C -0.14 -1.70 7.83 -25.80 -0.20 -1.90 16 15 C 0.02 0.30 6.78 -2.57 -0.02 0.28 16 16 N -0.42 -7.61 4.73 -231.83 -1.10 -8.71 16 17 C 0.02 0.33 5.31 -4.97 -0.03 0.31 16 18 C 0.45 11.16 7.59 -10.99 -0.08 11.07 16 19 O -0.57 -16.42 15.13 5.54 0.08 -16.33 16 20 N -0.57 -14.89 5.29 -10.96 -0.06 -14.94 16 21 C -0.29 -8.40 9.68 -14.94 -0.14 -8.55 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 25 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.06 0.56 6.47 -51.93 -0.34 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 33 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 34 H 0.07 0.83 6.47 -51.93 -0.34 0.49 16 35 H 0.07 0.79 6.30 -51.93 -0.33 0.46 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.15 7.89 -51.93 -0.41 0.74 16 38 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.09 1.11 5.81 -51.92 -0.30 0.81 16 40 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 43 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 44 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 45 H 0.09 1.21 7.19 -51.93 -0.37 0.83 16 46 H 0.09 1.11 7.94 -51.93 -0.41 0.70 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 49 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 50 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 51 H 0.08 1.44 7.80 -51.92 -0.40 1.04 16 52 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 53 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 419.89 15.07 6.33 6.33 Total: -1.00 -34.90 419.89 -9.49 -44.39 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -9.32 Total: 11.42 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 0.47 Total: 11.41 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -2.10 Total: -63.94 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.17 Total: -26.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.90 -9.49 -44.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688893787.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.167 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds