Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47155 * 2 1 4 4 C 1.46901 * 111.00051 * 66.04657 * 3 2 1 5 5 C 1.46895 * 111.00213 * 189.99760 * 3 2 1 6 6 C 1.52999 * 109.47696 * 169.99949 * 5 3 2 7 7 C 1.50698 * 109.47774 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99723 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00286 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99788 * 359.97438 * 9 7 6 11 11 C 1.46500 * 119.99903 * 180.02562 * 9 7 6 12 12 C 1.52994 * 109.47162 * 269.99702 * 11 9 7 13 13 H 1.09007 * 112.95862 * 287.14685 * 12 11 9 14 14 C 1.53934 * 113.76096 * 155.49645 * 12 11 9 15 15 C 1.53935 * 86.45688 * 221.80153 * 14 12 11 16 16 N 1.47961 * 113.85909 * 58.88682 * 12 11 9 17 17 C 1.46902 * 111.00005 * 251.91231 * 16 12 11 18 18 C 1.50702 * 109.47267 * 189.99947 * 17 16 12 19 19 O 1.21296 * 119.99494 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00134 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00203 * 180.02562 * 20 18 17 22 22 H 1.08005 * 120.00145 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00446 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00369 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47000 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47035 * 120.00008 * 25 23 21 28 28 H 1.48500 * 109.47521 * 240.00386 * 25 23 21 29 29 H 1.09001 * 109.47139 * 300.00103 * 1 2 3 30 30 H 1.09006 * 109.46848 * 59.99629 * 1 2 3 31 31 H 1.08993 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47139 * 239.99897 * 2 1 3 33 33 H 1.08996 * 109.47101 * 119.99626 * 2 1 3 34 34 H 1.09005 * 109.47399 * 183.95548 * 4 3 2 35 35 H 1.09007 * 109.47185 * 303.95130 * 4 3 2 36 36 H 1.09002 * 109.47407 * 63.94984 * 4 3 2 37 37 H 1.08999 * 109.46937 * 50.00166 * 5 3 2 38 38 H 1.09001 * 109.47368 * 290.00384 * 5 3 2 39 39 H 1.09009 * 109.46858 * 60.00089 * 6 5 3 40 40 H 1.09001 * 109.47067 * 300.00619 * 6 5 3 41 41 H 1.08994 * 109.47497 * 269.99840 * 10 9 7 42 42 H 1.09002 * 109.47101 * 30.00410 * 10 9 7 43 43 H 1.09006 * 109.46610 * 150.00112 * 10 9 7 44 44 H 1.09002 * 109.46652 * 150.00111 * 11 9 7 45 45 H 1.08998 * 109.47142 * 30.00016 * 11 9 7 46 46 H 1.09002 * 113.73279 * 336.21344 * 14 12 11 47 47 H 1.09002 * 113.73078 * 107.39042 * 14 12 11 48 48 H 1.09001 * 113.76001 * 138.09365 * 15 14 12 49 49 H 1.09000 * 113.75996 * 269.45181 * 15 14 12 50 50 H 1.08997 * 109.47246 * 310.00098 * 17 16 12 51 51 H 1.09007 * 109.46957 * 69.99875 * 17 16 12 52 52 H 0.97001 * 119.99910 * 359.97438 * 20 18 17 53 53 H 0.96996 * 119.99994 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4312 -0.2381 6 6 3.8999 2.8791 -0.4791 7 6 5.3861 2.9264 -0.7239 8 8 6.0362 1.9027 -0.7078 9 7 5.9929 4.1063 -0.9608 10 6 5.2075 5.3428 -0.9809 11 6 7.4376 4.1522 -1.1994 12 6 8.1688 4.3348 0.1320 13 1 8.0651 5.3404 0.5396 14 6 9.6185 3.8171 0.1195 15 6 9.3258 3.2467 1.5190 16 7 7.8990 3.2624 1.1150 17 6 7.0477 3.7517 2.2076 18 6 6.9955 2.7197 3.3046 19 8 7.6069 1.6787 3.1874 20 7 6.2686 2.9530 4.4153 21 6 6.2215 2.0145 5.4134 22 1 6.7665 1.0878 5.3096 23 6 5.4725 2.2552 6.5587 24 7 4.8089 3.3823 6.6850 25 14 5.4078 0.9760 7.9184 26 1 6.2346 -0.1965 7.5348 27 1 5.9358 1.5632 9.1761 28 1 4.0021 0.5444 8.1256 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9824 3.1099 1.1988 35 1 0.5919 2.0180 1.4052 36 1 2.1769 1.5790 2.0860 37 1 3.7122 0.8290 -1.1134 38 1 3.9925 1.0359 0.6321 39 1 3.6562 3.4813 0.3963 40 1 3.3759 3.2744 -1.3493 41 1 4.8509 5.5304 -1.9936 42 1 4.3556 5.2431 -0.3082 43 1 5.8318 6.1751 -0.6555 44 1 7.6704 4.9878 -1.8594 45 1 7.7586 3.2206 -1.6655 46 1 9.8051 3.0533 -0.6353 47 1 10.3671 4.6094 0.1165 48 1 9.7280 2.2463 1.6784 49 1 9.5597 3.9348 2.3314 50 1 7.4604 4.6804 2.6018 51 1 6.0410 3.9327 1.8307 52 1 5.7793 3.7854 4.5087 53 1 4.2857 3.5502 7.4843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688893787.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -49.575526 kcal Electronic energy + Delta-G solvation = -31857.014002 eV Core-core repulsion = 27764.194738 eV Total energy + Delta-G solvation = -4092.819264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.52876 -40.48281 -39.47757 -38.65705 -36.34285 -35.97110 -33.47397 -33.35105 -32.00448 -30.75738 -29.56240 -27.73879 -27.53393 -27.10710 -25.30755 -24.85119 -23.24781 -21.76433 -21.15272 -20.52490 -19.97904 -19.89749 -18.14107 -17.83189 -17.29623 -17.12920 -16.83197 -16.66336 -16.50940 -16.17995 -15.95169 -15.63019 -15.51077 -15.23822 -14.95482 -14.63960 -14.27645 -14.06518 -13.91208 -13.67071 -13.59197 -13.55812 -13.24295 -13.02992 -12.99247 -12.85517 -12.83509 -12.71974 -12.58857 -12.47882 -12.28540 -12.25365 -12.18386 -11.92099 -11.81870 -11.78389 -11.62805 -11.53176 -10.61810 -10.39860 -10.05495 -9.71158 -9.47613 -9.28921 -8.51409 -5.99853 1.30544 1.35500 1.49676 1.84190 1.99849 2.10420 2.24508 2.81196 2.94629 3.14317 3.28580 3.63615 3.78956 3.83820 3.85853 4.05765 4.09162 4.17727 4.23640 4.25412 4.26254 4.35247 4.40356 4.46064 4.49127 4.50012 4.55083 4.57390 4.59531 4.64084 4.80373 4.82491 4.85842 4.91957 4.95827 4.96584 4.98326 5.03022 5.04820 5.09232 5.28275 5.32708 5.35403 5.48348 5.78219 5.90320 5.94308 5.99755 6.15921 6.54829 6.56631 7.08654 7.42929 7.50131 8.08035 8.66351 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006466 B = 0.004924 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4329.165949 B = 5684.586233 C = 9021.433363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.042 3.958 3 N -0.533 5.533 4 C 0.017 3.983 5 C 0.077 3.923 6 C -0.123 4.123 7 C 0.505 3.495 8 O -0.563 6.563 9 N -0.615 5.615 10 C 0.071 3.929 11 C 0.139 3.861 12 C 0.013 3.987 13 H 0.098 0.902 14 C -0.113 4.113 15 C 0.005 3.995 16 N -0.461 5.461 17 C 0.036 3.964 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.071 0.929 23 C -0.008 4.008 24 N -0.917 5.917 25 Si 0.988 3.012 26 H -0.279 1.279 27 H -0.266 1.266 28 H -0.268 1.268 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.014 0.986 34 H 0.080 0.920 35 H 0.089 0.911 36 H -0.001 1.001 37 H 0.073 0.927 38 H -0.002 1.002 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.053 0.947 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.087 0.913 52 H 0.395 0.605 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 9.814 -18.002 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.086 4.086 3 N -0.258 5.258 4 C -0.131 4.131 5 C -0.052 4.052 6 C -0.163 4.163 7 C 0.293 3.707 8 O -0.440 6.440 9 N -0.349 5.349 10 C -0.071 4.071 11 C 0.016 3.984 12 C -0.097 4.097 13 H 0.116 0.884 14 C -0.152 4.152 15 C -0.124 4.124 16 N -0.184 5.184 17 C -0.096 4.096 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.558 5.558 25 Si 0.812 3.188 26 H -0.204 1.204 27 H -0.191 1.191 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.018 0.982 37 H 0.091 0.909 38 H 0.017 0.983 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.106 0.894 52 H 0.228 0.772 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.493 8.303 -18.504 20.773 hybrid contribution 0.512 -0.290 2.424 2.494 sum -3.981 8.013 -16.080 18.401 Atomic orbital electron populations 1.21742 0.92724 1.02481 1.02691 1.22209 0.97736 0.88347 1.00329 1.62194 1.12472 1.16446 1.34640 1.22540 1.02177 0.99585 0.88800 1.21671 0.87164 0.96750 0.99601 1.21571 0.91695 0.97799 1.05209 1.20888 0.90365 0.83438 0.75989 1.90752 1.67439 1.35010 1.50816 1.47808 1.08453 1.07333 1.71279 1.22070 0.96527 0.85172 1.03297 1.21434 0.78845 1.03464 0.94661 1.24115 0.95674 0.94897 0.95059 0.88408 1.23235 0.95705 1.00856 0.95356 1.23717 0.90255 1.00512 0.97925 1.68622 1.05666 1.35637 1.08471 1.22188 1.00549 0.94835 0.91988 1.20802 0.82792 0.89396 0.84298 1.90501 1.49124 1.29920 1.80840 1.41898 1.44137 1.19132 1.15906 1.19597 1.29608 0.99761 0.97210 0.91139 1.25956 0.95394 0.99343 1.00135 1.69661 1.31280 1.24736 1.30104 0.84949 0.78388 0.77747 0.77723 1.20370 1.19064 1.19355 0.92651 0.91099 0.91087 0.90371 0.96716 0.90143 0.89285 0.98184 0.90869 0.98317 0.88648 0.85641 0.90393 0.90834 0.89303 0.86072 0.91934 0.89431 0.87773 0.92784 0.91923 0.91182 0.89450 0.77155 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.84 71.98 0.71 -1.88 16 2 C 0.04 1.02 5.68 86.30 0.49 1.51 16 3 N -0.53 -13.98 4.76 -922.45 -4.39 -18.37 16 4 C 0.02 0.44 9.13 127.69 1.17 1.61 16 5 C 0.08 2.35 4.25 86.30 0.37 2.72 16 6 C -0.12 -3.04 4.18 29.85 0.12 -2.92 16 7 C 0.51 15.10 6.92 87.66 0.61 15.71 16 8 O -0.56 -23.12 15.00 -3.04 -0.05 -23.16 16 9 N -0.62 -13.23 2.85 -846.77 -2.41 -15.64 16 10 C 0.07 0.85 10.24 127.77 1.31 2.16 16 11 C 0.14 2.85 5.57 86.38 0.48 3.33 16 12 C 0.01 0.29 3.57 45.02 0.16 0.45 16 13 H 0.10 1.85 7.79 -2.38 -0.02 1.83 16 14 C -0.11 -2.59 7.83 31.24 0.24 -2.34 16 15 C 0.00 0.17 6.78 86.34 0.59 0.75 16 16 N -0.46 -16.61 4.73 -887.37 -4.20 -20.81 16 17 C 0.04 1.39 5.31 85.56 0.45 1.85 16 18 C 0.44 22.94 7.59 87.66 0.67 23.60 16 19 O -0.62 -37.92 15.13 -3.08 -0.05 -37.96 16 20 N -0.57 -31.16 5.29 -306.99 -1.62 -32.78 16 21 C -0.33 -19.84 9.68 84.04 0.81 -19.02 16 22 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 23 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 24 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 25 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H 0.05 1.03 6.47 -2.39 -0.02 1.02 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 33 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 34 H 0.08 1.87 6.47 -2.38 -0.02 1.86 16 35 H 0.09 1.94 6.30 -2.38 -0.02 1.93 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.07 2.28 7.89 -2.39 -0.02 2.26 16 38 H 0.00 -0.06 8.08 -2.39 -0.02 -0.08 16 39 H 0.10 2.26 5.81 -2.38 -0.01 2.25 16 40 H 0.13 2.32 8.11 -2.39 -0.02 2.30 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.88 6.44 -2.39 -0.02 0.86 16 43 H 0.09 0.75 8.07 -2.38 -0.02 0.73 16 44 H 0.12 1.40 8.07 -2.39 -0.02 1.38 16 45 H 0.06 1.65 7.19 -2.39 -0.02 1.63 16 46 H 0.09 2.07 7.94 -2.39 -0.02 2.05 16 47 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 49 H 0.06 2.07 7.79 -2.39 -0.02 2.05 16 50 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 51 H 0.09 3.17 7.80 -2.38 -0.02 3.15 16 52 H 0.39 20.19 7.90 -92.71 -0.73 19.46 16 53 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -82.72 419.89 -1.60 -84.32 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: 0.16 Total: 40.22 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 8.64 Total: 27.53 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -12.34 Total: -137.44 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -0.09 Total: -61.13 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -82.72 -1.60 -84.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688893787.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.748 kcal (2) G-P(sol) polarization free energy of solvation -82.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds