Wall clock time and date at job start Sat Apr 11 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47019 * 2 1 4 4 C 1.50705 * 109.47169 * 119.99495 * 2 1 3 5 5 N 1.30288 * 126.34873 * 299.96073 * 4 2 1 6 6 N 1.28527 * 110.05303 * 180.02562 * 5 4 2 7 7 C 1.31210 * 109.86061 * 359.74575 * 6 5 4 8 8 N 1.38581 * 126.47576 * 180.26072 * 7 6 5 9 9 C 1.46901 * 110.99970 * 241.03236 * 8 7 6 10 10 C 1.46902 * 110.99803 * 4.98343 * 8 7 6 11 11 H 1.08998 * 109.47281 * 55.00181 * 10 8 7 12 12 C 1.53001 * 109.47156 * 295.00132 * 10 8 7 13 13 C 1.50697 * 109.46872 * 175.00615 * 10 8 7 14 14 H 1.07998 * 120.00600 * 359.97438 * 13 10 8 15 15 C 1.37886 * 120.00109 * 180.02562 * 13 10 8 16 16 N 1.31517 * 119.99467 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00428 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46847 * 60.00015 * 17 15 13 19 19 H 1.48504 * 109.47128 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47298 * 300.00410 * 17 15 13 21 21 N 1.36457 * 107.05474 * 0.39924 * 7 6 5 22 22 C 1.46501 * 127.13469 * 179.87309 * 21 7 6 23 23 C 1.52997 * 109.46984 * 263.51272 * 22 21 7 24 24 O 1.42898 * 109.47155 * 176.86954 * 23 22 21 25 25 C 1.42895 * 114.00467 * 180.02562 * 24 23 22 26 26 C 1.52999 * 109.47308 * 180.02562 * 25 24 23 27 27 C 1.53006 * 109.47177 * 180.02562 * 26 25 24 28 28 O 1.42897 * 109.47450 * 179.97438 * 27 26 25 29 29 H 1.09000 * 109.47290 * 300.00289 * 1 2 3 30 30 H 1.09006 * 109.46967 * 60.00275 * 1 2 3 31 31 H 1.09004 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47290 * 239.99711 * 2 1 3 33 33 H 1.09003 * 109.46985 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46564 * 299.99613 * 3 2 1 35 35 H 1.08992 * 109.47545 * 59.99968 * 3 2 1 36 36 H 1.08998 * 109.47054 * 52.49705 * 9 8 7 37 37 H 1.08996 * 109.47645 * 172.50095 * 9 8 7 38 38 H 1.09007 * 109.47149 * 292.49906 * 9 8 7 39 39 H 1.09004 * 109.46938 * 59.99907 * 12 10 8 40 40 H 1.08998 * 109.47610 * 180.02562 * 12 10 8 41 41 H 1.08998 * 109.47066 * 300.00181 * 12 10 8 42 42 H 0.97003 * 120.00057 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.46585 * 143.51993 * 22 21 7 44 44 H 1.08996 * 109.47133 * 23.52012 * 22 21 7 45 45 H 1.09005 * 109.46999 * 56.87365 * 23 22 21 46 46 H 1.08997 * 109.47679 * 296.87397 * 23 22 21 47 47 H 1.09001 * 109.47176 * 300.00371 * 25 24 23 48 48 H 1.09002 * 109.47067 * 59.99987 * 25 24 23 49 49 H 1.09006 * 109.47136 * 299.99395 * 26 25 24 50 50 H 1.08989 * 109.47513 * 60.00463 * 26 25 24 51 51 H 1.09001 * 109.47132 * 299.99920 * 27 26 25 52 52 H 1.09002 * 109.47243 * 59.99616 * 27 26 25 53 53 H 0.96692 * 114.00530 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7956 -0.3742 2.4669 6 7 2.3771 -1.1960 3.2660 7 6 3.0167 -2.1110 2.5766 8 7 3.7540 -3.1652 3.0919 9 6 5.1588 -3.0806 2.6709 10 6 3.6455 -3.2174 4.5560 11 1 2.5943 -3.2610 4.8411 12 6 4.2863 -1.9662 5.1599 13 6 4.3564 -4.4432 5.0689 14 1 4.8400 -5.1164 4.3767 15 6 4.3885 -4.7059 6.4222 16 7 3.7991 -3.8864 7.2652 17 14 5.2690 -6.2256 7.0580 18 1 6.7012 -6.1665 6.6700 19 1 5.1594 -6.2783 8.5380 20 1 4.6471 -7.4398 6.4715 21 7 2.8215 -1.8267 1.2564 22 6 3.3438 -2.5675 0.1055 23 6 4.6263 -1.8981 -0.3925 24 8 5.1753 -2.6616 -1.4684 25 6 6.3822 -2.1201 -2.0088 26 6 6.8768 -3.0136 -3.1481 27 6 8.1695 -2.4341 -3.7263 28 8 8.6318 -3.2689 -4.7900 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 5.5511 -2.0924 2.9108 37 1 5.7412 -3.8394 3.1935 38 1 5.2266 -3.2473 1.5958 39 1 3.7721 -1.0795 4.7888 40 1 4.2062 -2.0050 6.2462 41 1 5.3374 -1.9226 4.8747 42 1 3.8213 -4.0714 8.2172 43 1 2.6015 -2.5694 -0.6926 44 1 3.5610 -3.5936 0.4021 45 1 5.3489 -1.8462 0.4220 46 1 4.3987 -0.8907 -0.7410 47 1 6.1914 -1.1172 -2.3908 48 1 7.1411 -2.0731 -1.2278 49 1 7.0677 -4.0167 -2.7665 50 1 6.1180 -3.0602 -3.9290 51 1 7.9792 -1.4310 -4.1078 52 1 8.9283 -2.3879 -2.9452 53 1 9.4493 -2.9612 -5.2046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691646512.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:02 Heat of formation + Delta-G solvation = -32.583962 kcal Electronic energy + Delta-G solvation = -31214.966191 eV Core-core repulsion = 27122.883737 eV Total energy + Delta-G solvation = -4092.082454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.02244 -39.47290 -39.15846 -37.90145 -36.70212 -36.07117 -34.68779 -33.39994 -30.98054 -30.42673 -30.17886 -28.03451 -27.28515 -26.94117 -26.16071 -24.76542 -24.18699 -23.14974 -22.48139 -21.17825 -20.59373 -18.74845 -18.33754 -18.04301 -17.60696 -17.46636 -17.10918 -17.00178 -16.59434 -16.34720 -15.95498 -15.48661 -15.35549 -15.09832 -15.00531 -14.65495 -14.57463 -14.40383 -13.92395 -13.47051 -13.29258 -13.24481 -13.19057 -13.00807 -12.94962 -12.71868 -12.68419 -12.51739 -12.47801 -12.28139 -12.19935 -12.13577 -12.04666 -12.02508 -11.97733 -11.93464 -11.34035 -11.14329 -10.90438 -10.89729 -10.71582 -10.55196 -10.49947 -9.04102 -8.13078 -6.28554 0.80103 1.16870 1.44376 1.46827 1.54490 1.90721 2.34477 2.45583 3.01419 3.16370 3.32850 3.47472 3.55905 3.80651 3.86578 3.92707 4.00021 4.09694 4.16001 4.17549 4.22568 4.30252 4.32015 4.36846 4.41839 4.46317 4.50475 4.57587 4.63872 4.66438 4.70165 4.83729 4.88695 4.95564 4.96635 5.03254 5.06116 5.09115 5.09894 5.14476 5.19529 5.36622 5.38427 5.49239 5.59962 5.61348 5.84249 5.99960 6.06370 6.20539 6.56846 6.80499 6.89640 7.40272 7.88516 8.93356 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007530 B = 0.003495 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3717.706823 B = 8008.844109 C =11211.912945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.001 3.999 3 C -0.136 4.136 4 C 0.181 3.819 5 N -0.323 5.323 6 N -0.362 5.362 7 C 0.367 3.633 8 N -0.457 5.457 9 C 0.036 3.964 10 C 0.243 3.757 11 H 0.002 0.998 12 C -0.154 4.154 13 C -0.528 4.528 14 H 0.071 0.929 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.969 3.031 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.271 1.271 21 N -0.478 5.478 22 C 0.107 3.893 23 C 0.056 3.944 24 O -0.392 6.392 25 C 0.065 3.935 26 C -0.120 4.120 27 C 0.080 3.920 28 O -0.597 6.597 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.024 0.976 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.058 0.942 53 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 7.890 -26.344 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 C -0.194 4.194 4 C -0.088 4.088 5 N -0.161 5.161 6 N -0.206 5.206 7 C 0.009 3.991 8 N -0.180 5.180 9 C -0.111 4.111 10 C 0.137 3.863 11 H 0.020 0.980 12 C -0.213 4.213 13 C -0.566 4.566 14 H 0.089 0.911 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.196 1.196 21 N -0.175 5.175 22 C -0.015 4.015 23 C -0.022 4.022 24 O -0.311 6.311 25 C -0.012 4.012 26 C -0.158 4.158 27 C 0.002 3.998 28 O -0.406 6.406 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.119 0.881 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.084 0.916 52 H 0.076 0.924 53 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.609 7.703 -25.045 26.605 hybrid contribution 1.555 -0.474 0.519 1.707 sum 6.164 7.229 -24.526 26.302 Atomic orbital electron populations 1.21796 0.92226 1.02119 1.03459 1.19838 0.97159 0.95965 0.89051 1.21785 1.00824 0.93272 1.03477 1.25534 0.96547 0.88503 0.98175 1.73820 1.20914 1.22113 0.99234 1.74751 1.16625 1.03566 1.25622 1.23137 1.00634 0.93304 0.81996 1.59164 1.11079 1.32642 1.15151 1.22564 0.85989 1.01223 1.01310 1.18906 0.95334 0.94396 0.77620 0.98025 1.22208 0.97683 0.98102 1.03342 1.21296 1.35077 1.07854 0.92388 0.91123 1.25784 0.96161 0.99764 0.96905 1.70080 1.44355 1.38217 1.03023 0.85447 0.79214 0.79180 0.76801 1.18900 1.21245 1.19584 1.46181 1.40737 1.24699 1.05891 1.21751 0.96993 0.96284 0.86470 1.22706 0.94121 0.95347 0.89977 1.87775 1.41464 1.51755 1.50070 1.22471 0.85741 0.97341 0.95623 1.21355 0.97348 0.99852 0.97199 1.22015 0.94897 0.93386 0.89494 1.86409 1.47692 1.54641 1.51896 0.93311 0.88277 0.93373 0.87012 0.92975 0.88342 0.93304 0.95698 0.89294 0.89611 0.94219 0.91974 0.95347 0.92778 0.85370 0.88095 0.93242 0.90666 0.90974 0.92367 0.91811 0.90908 0.91609 0.92384 0.74895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.17 71.98 0.66 -1.85 16 2 C 0.00 0.01 3.30 -11.54 -0.04 -0.02 16 3 C -0.14 -2.27 9.18 71.98 0.66 -1.61 16 4 C 0.18 5.65 6.58 137.64 0.91 6.55 16 5 N -0.32 -13.39 12.18 -49.54 -0.60 -13.99 16 6 N -0.36 -17.40 9.16 -58.01 -0.53 -17.93 16 7 C 0.37 15.62 6.70 260.11 1.74 17.37 16 8 N -0.46 -20.49 4.74 -711.00 -3.37 -23.86 16 9 C 0.04 1.33 7.92 127.69 1.01 2.34 16 10 C 0.24 13.13 2.04 44.17 0.09 13.22 16 11 H 0.00 0.11 8.02 -2.39 -0.02 0.09 16 12 C -0.15 -8.23 8.28 71.98 0.60 -7.64 16 13 C -0.53 -29.02 7.77 25.60 0.20 -28.83 16 14 H 0.07 3.70 6.84 -2.91 -0.02 3.68 16 15 C 0.01 0.74 5.30 84.66 0.45 1.19 16 16 N -0.92 -54.49 11.32 21.45 0.24 -54.25 16 17 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 N -0.48 -15.24 2.81 -514.87 -1.45 -16.68 16 22 C 0.11 2.45 5.24 86.38 0.45 2.90 16 23 C 0.06 1.07 5.81 71.98 0.42 1.49 16 24 O -0.39 -7.28 10.34 -148.98 -1.54 -8.82 16 25 C 0.06 0.88 5.94 71.98 0.43 1.31 16 26 C -0.12 -1.70 5.95 30.60 0.18 -1.52 16 27 C 0.08 0.83 7.05 71.98 0.51 1.34 16 28 O -0.60 -7.79 13.66 -148.98 -2.03 -9.82 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.11 1.49 7.10 -2.39 -0.02 1.47 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.02 0.92 6.90 -2.39 -0.02 0.91 16 37 H 0.09 3.46 6.25 -2.39 -0.01 3.45 16 38 H 0.09 2.56 4.46 -2.38 -0.01 2.55 16 39 H 0.04 2.12 5.70 -2.38 -0.01 2.10 16 40 H 0.06 3.66 6.07 -2.39 -0.01 3.64 16 41 H 0.03 1.40 6.65 -2.39 -0.02 1.39 16 42 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.13 2.17 7.51 -2.39 -0.02 2.15 16 44 H 0.10 2.58 7.37 -2.39 -0.02 2.56 16 45 H 0.05 1.08 6.19 -2.38 -0.01 1.07 16 46 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 49 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 53 H 0.40 1.37 9.12 -74.06 -0.68 0.69 16 Total: -1.00 -77.17 413.64 1.23 -75.94 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.23 Total: 17.77 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 8.26 Total: 6.24 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.71 Total: -126.72 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -3.58 Total: -18.64 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.17 1.23 -75.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691646512.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.353 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds