Wall clock time and date at job start Sat Apr 11 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47047 * 2 1 4 4 C 1.52995 * 109.47525 * 239.99393 * 2 1 3 5 5 N 1.46906 * 109.46978 * 65.00259 * 4 2 1 6 6 C 1.46901 * 110.99793 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46921 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99849 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99707 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99704 * 359.97438 * 10 9 7 12 12 C 1.38941 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.31417 * 120.00180 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00273 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46986 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47457 * 119.99901 * 14 12 10 17 17 H 1.48501 * 109.47104 * 239.99973 * 14 12 10 18 18 C 1.53001 * 109.46888 * 119.99108 * 2 1 3 19 19 N 1.46500 * 109.47432 * 295.00182 * 18 2 1 20 20 C 1.34779 * 120.00108 * 179.97438 * 19 18 2 21 21 O 1.21288 * 119.99614 * 0.02562 * 20 19 18 22 22 C 1.50696 * 120.00015 * 180.02562 * 20 19 18 23 23 H 1.09003 * 109.46041 * 319.99548 * 22 20 19 24 24 C 1.53027 * 109.46441 * 79.97807 * 22 20 19 25 25 C 1.53123 * 109.27944 * 179.19469 * 24 22 20 26 26 C 1.53115 * 109.16007 * 302.34358 * 25 24 22 27 27 C 1.53043 * 109.27788 * 57.65396 * 26 25 24 28 28 N 1.46845 * 109.51359 * 300.81611 * 27 26 25 29 29 C 1.46905 * 110.99123 * 185.84543 * 28 27 26 30 30 H 1.09001 * 109.46810 * 60.00462 * 1 2 3 31 31 H 1.08992 * 109.47526 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47437 * 300.01145 * 1 2 3 33 33 H 1.08995 * 109.46859 * 305.00551 * 4 2 1 34 34 H 1.09002 * 109.47639 * 185.00219 * 4 2 1 35 35 H 1.00899 * 110.99995 * 56.04730 * 5 4 2 36 36 H 1.09002 * 109.47401 * 59.99808 * 6 5 4 37 37 H 1.09001 * 109.46874 * 299.99821 * 6 5 4 38 38 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99884 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.46867 * 55.00238 * 18 2 1 41 41 H 1.08998 * 109.47402 * 174.99845 * 18 2 1 42 42 H 0.96996 * 120.00048 * 359.97438 * 19 18 2 43 43 H 1.09004 * 109.50687 * 299.13714 * 24 22 20 44 44 H 1.09009 * 109.50435 * 59.25235 * 24 22 20 45 45 H 1.08998 * 109.52270 * 62.25183 * 25 24 22 46 46 H 1.08997 * 109.52530 * 182.37955 * 25 24 22 47 47 H 1.09002 * 109.50607 * 177.59385 * 26 25 24 48 48 H 1.09003 * 109.50787 * 297.67803 * 26 25 24 49 49 H 1.09000 * 109.45896 * 60.83606 * 27 26 25 50 50 H 1.08997 * 109.46083 * 180.81172 * 27 26 25 51 51 H 1.08999 * 109.46965 * 295.79757 * 29 28 27 52 52 H 1.09003 * 109.46865 * 55.79888 * 29 28 27 53 53 H 1.08997 * 109.47049 * 175.78948 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0373 -2.4456 6 6 2.1250 -0.6274 -3.6671 7 6 1.7080 0.1777 -4.8709 8 8 1.0788 1.2044 -4.7255 9 7 2.0352 -0.2427 -6.1089 10 6 1.6563 0.4900 -7.2040 11 1 1.0953 1.4038 -7.0746 12 6 1.9931 0.0564 -8.4804 13 7 2.6753 -1.0557 -8.6379 14 14 1.4776 1.0550 -9.9725 15 1 0.7254 2.2559 -9.5285 16 1 2.6849 1.4774 -10.7267 17 1 0.6119 0.2252 -10.8484 18 6 2.0399 -0.7211 1.2494 19 7 1.6523 0.0357 2.4424 20 6 1.9954 -0.4132 3.6661 21 8 2.6255 -1.4434 3.7795 22 6 1.5962 0.3649 4.8933 23 1 1.7127 1.4315 4.7009 24 6 0.1349 0.0649 5.2343 25 6 -0.2603 0.8419 6.4932 26 6 0.6780 0.4531 7.6390 27 6 2.1237 0.7418 7.2283 28 7 2.4530 -0.0254 6.0203 29 6 3.8738 0.1192 5.6761 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.6054 -1.7198 -1.2949 34 1 3.1264 -0.7996 -1.2054 35 1 1.9883 0.9871 -2.3967 36 1 1.6906 -1.6252 -3.7295 37 1 3.2119 -0.7053 -3.6403 38 1 2.5387 -1.0636 -6.2251 39 1 2.9107 -1.3582 -9.5289 40 1 1.6053 -1.7197 1.2954 41 1 3.1262 -0.7994 1.2058 42 1 1.1488 0.8597 2.3517 43 1 -0.5025 0.3690 4.4040 44 1 0.0149 -1.0036 5.4135 45 1 -0.1777 1.9118 6.3018 46 1 -1.2877 0.5986 6.7640 47 1 0.4289 1.0345 8.5267 48 1 0.5662 -0.6091 7.8565 49 1 2.2377 1.8066 7.0248 50 1 2.7955 0.4526 8.0365 51 1 4.0822 1.1585 5.4222 52 1 4.4860 -0.1765 6.5281 53 1 4.1075 -0.5174 4.8227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698754188.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:24 Heat of formation + Delta-G solvation = -105.844319 kcal Electronic energy + Delta-G solvation = -29250.674591 eV Core-core repulsion = 25155.415329 eV Total energy + Delta-G solvation = -4095.259262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.43765 -40.17707 -39.22669 -38.10954 -36.19560 -35.67086 -34.44832 -33.54267 -33.19154 -31.99120 -28.85146 -28.09881 -27.42878 -26.55788 -25.05676 -24.12172 -23.67372 -21.72407 -21.41694 -20.97367 -20.55186 -19.88787 -18.29584 -17.81964 -17.32279 -16.99745 -16.64378 -16.47488 -16.23686 -15.97597 -15.95126 -15.55479 -15.44604 -15.25340 -15.15044 -14.85260 -14.53374 -14.19162 -13.99391 -13.95545 -13.77790 -13.53826 -13.40483 -13.20621 -13.07442 -12.95712 -12.84086 -12.69217 -12.40562 -12.36732 -12.11470 -12.01206 -11.94818 -11.85393 -11.71249 -11.62952 -11.51084 -11.34088 -10.63039 -10.33934 -10.09110 -10.01376 -9.30945 -9.29960 -8.46762 -5.95636 1.36882 1.42232 1.56423 1.57463 2.02301 2.05501 2.29597 2.89444 2.98179 3.20709 3.52913 3.63444 3.80627 3.86820 3.96738 3.98169 4.05570 4.08690 4.15700 4.29846 4.33166 4.44166 4.48041 4.49612 4.50055 4.57781 4.58326 4.62953 4.75033 4.77598 4.81379 4.84313 4.96469 4.96926 5.03250 5.04179 5.09131 5.18629 5.24430 5.28155 5.41214 5.44160 5.45523 5.54556 5.88550 5.92867 6.09385 6.10071 6.42001 6.55338 6.60023 7.12649 7.24157 7.56455 8.11412 8.70845 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.034771 B = 0.001448 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.067518 B =19337.873586 C =19716.862922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.083 0.917 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.133 3.867 19 N -0.715 5.715 20 C 0.513 3.487 21 O -0.565 6.565 22 C 0.073 3.927 23 H 0.078 0.922 24 C -0.105 4.105 25 C -0.116 4.116 26 C -0.119 4.119 27 C 0.055 3.945 28 N -0.541 5.541 29 C 0.018 3.982 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.345 0.655 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.413 0.587 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.060 0.940 49 H 0.042 0.958 50 H 0.082 0.918 51 H 0.029 0.971 52 H 0.076 0.924 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 2.927 32.052 32.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.009 3.991 19 N -0.368 5.368 20 C 0.299 3.701 21 O -0.443 6.443 22 C -0.039 4.039 23 H 0.096 0.904 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.072 4.072 28 N -0.267 5.267 29 C -0.129 4.129 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.163 0.837 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.250 0.750 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.048 0.952 52 H 0.094 0.906 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.248 1.995 32.113 32.253 hybrid contribution 1.181 1.052 -1.376 2.096 sum -1.067 3.047 30.736 30.905 Atomic orbital electron populations 1.21701 0.93776 1.01918 1.01920 1.21194 0.97355 1.00006 0.91979 0.89819 1.21969 0.98138 0.97836 0.88364 1.60030 1.64660 1.05924 1.00237 1.21525 0.99061 0.98055 0.88148 1.20880 0.83855 0.87618 0.85067 1.90486 1.45547 1.28307 1.86508 1.41950 1.50035 1.24373 1.04789 1.19720 1.34356 1.06977 0.85313 0.90246 1.26043 0.96442 0.97567 1.01225 1.69683 1.39013 1.22508 1.24983 0.84862 0.78215 0.77984 0.77218 1.19726 1.19612 1.19674 1.21221 0.99492 0.95178 0.83218 1.45931 1.57646 1.28160 1.05071 1.20882 0.78597 0.85502 0.85073 1.90677 1.40771 1.25860 1.86970 1.21649 0.95918 0.97624 0.88700 0.90408 1.21571 0.91564 1.01342 0.99879 1.21580 0.99952 1.00146 0.93723 1.21632 0.93209 1.02113 0.98678 1.22223 0.98128 0.95382 0.91487 1.61646 1.03819 1.57405 1.03829 1.22489 0.88221 0.99559 1.02669 0.92820 0.93116 0.91572 0.90414 0.94191 0.83682 0.87967 0.91685 0.77008 0.91326 0.91991 0.92132 0.74999 0.89381 0.92328 0.90762 0.90183 0.89523 0.92135 0.93940 0.89985 0.95232 0.90558 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.95 71.98 0.64 -1.80 16 2 C -0.09 -1.47 2.57 -10.80 -0.03 -1.50 16 3 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.07 1.41 5.07 86.30 0.44 1.85 16 5 N -0.68 -19.96 5.58 -517.92 -2.89 -22.85 16 6 C 0.06 2.16 6.17 85.56 0.53 2.69 16 7 C 0.44 20.65 7.82 87.66 0.69 21.34 16 8 O -0.62 -34.04 15.78 -3.07 -0.05 -34.09 16 9 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 10 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 13 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 14 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.13 2.29 5.06 86.38 0.44 2.73 16 19 N -0.72 -10.63 5.28 -463.05 -2.45 -13.08 16 20 C 0.51 9.99 6.26 87.66 0.55 10.54 16 21 O -0.56 -15.99 14.52 -3.06 -0.04 -16.04 16 22 C 0.07 1.05 2.24 44.19 0.10 1.15 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 C -0.11 -1.21 5.35 30.64 0.16 -1.05 16 25 C -0.12 -0.92 6.00 30.67 0.18 -0.74 16 26 C -0.12 -1.07 6.09 30.65 0.19 -0.88 16 27 C 0.05 0.62 5.46 86.33 0.47 1.09 16 28 N -0.54 -9.03 4.51 -901.60 -4.07 -13.09 16 29 C 0.02 0.32 9.09 127.69 1.16 1.48 16 30 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.88 7.18 -2.39 -0.02 0.86 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.34 10.60 8.43 -89.69 -0.76 9.85 16 36 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 39 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.41 3.98 7.66 -92.71 -0.71 3.27 16 43 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 50 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 51 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 53 H 0.06 1.43 5.62 -2.39 -0.01 1.41 16 Total: -1.00 -72.66 420.83 -3.29 -75.95 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -1.29 Total: 40.31 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.80 Total: 18.49 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -10.74 Total: -129.50 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.09 Total: -50.13 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.66 -3.29 -75.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698754188.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.890 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds