Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46763 * 239.99813 * 2 1 3 5 5 N 1.46896 * 109.47453 * 65.00195 * 4 2 1 6 6 C 1.46905 * 111.00102 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46795 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00467 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99828 * 180.02562 * 7 6 5 10 10 C 1.37097 * 120.00364 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99781 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00376 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99615 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00127 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47066 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47543 * 119.99783 * 14 12 10 17 17 H 1.48500 * 109.46937 * 239.99693 * 14 12 10 18 18 C 1.53001 * 109.46806 * 119.99739 * 2 1 3 19 19 N 1.46493 * 109.47084 * 294.99611 * 18 2 1 20 20 C 1.34784 * 119.99864 * 180.02562 * 19 18 2 21 21 O 1.21283 * 119.99649 * 359.72839 * 20 19 18 22 22 C 1.50694 * 119.99988 * 179.72721 * 20 19 18 23 23 C 1.53001 * 109.47168 * 179.97438 * 22 20 19 24 24 H 1.08997 * 110.27210 * 304.36702 * 23 22 20 25 25 C 1.54589 * 110.31042 * 182.17088 * 23 22 20 26 26 C 1.54945 * 102.92239 * 219.12959 * 25 23 22 27 27 N 1.48532 * 103.22775 * 37.40954 * 26 25 23 28 28 C 1.46895 * 111.00112 * 200.28329 * 27 26 25 29 29 C 1.47902 * 105.82073 * 320.79694 * 27 26 25 30 30 H 1.08996 * 109.46781 * 60.00115 * 1 2 3 31 31 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47177 * 300.00294 * 1 2 3 33 33 H 1.09007 * 109.47118 * 185.00054 * 4 2 1 34 34 H 1.09002 * 109.47058 * 304.99684 * 4 2 1 35 35 H 1.00901 * 110.99888 * 56.04439 * 5 4 2 36 36 H 1.08994 * 109.46923 * 299.99783 * 6 5 4 37 37 H 1.08997 * 109.46830 * 59.99696 * 6 5 4 38 38 H 0.97001 * 119.99867 * 359.97438 * 9 7 6 39 39 H 0.97002 * 119.99428 * 179.97438 * 13 12 10 40 40 H 1.09007 * 109.46593 * 174.99868 * 18 2 1 41 41 H 1.09006 * 109.47216 * 55.00327 * 18 2 1 42 42 H 0.97000 * 120.00740 * 359.72857 * 19 18 2 43 43 H 1.08998 * 109.47224 * 299.99701 * 22 20 19 44 44 H 1.09002 * 109.47054 * 60.00213 * 22 20 19 45 45 H 1.09004 * 110.72664 * 337.47964 * 25 23 22 46 46 H 1.09000 * 110.72753 * 100.77248 * 25 23 22 47 47 H 1.08997 * 110.66224 * 278.97753 * 26 25 23 48 48 H 1.09003 * 110.81267 * 155.91602 * 26 25 23 49 49 H 1.09002 * 109.47293 * 177.40057 * 28 27 26 50 50 H 1.09004 * 109.47158 * 297.39451 * 28 27 26 51 51 H 1.08995 * 109.47389 * 57.39852 * 28 27 26 52 52 H 1.08994 * 109.91678 * 265.97445 * 29 27 26 53 53 H 1.08998 * 109.91804 * 144.68111 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6514 0.0373 -2.4456 6 6 2.1258 -0.6268 -3.6672 7 6 1.7098 0.1790 -4.8707 8 8 1.0797 1.2053 -4.7254 9 7 2.0370 -0.2412 -6.1088 10 6 1.6581 0.4915 -7.2039 11 1 1.0971 1.4053 -7.0745 12 6 1.9950 0.0581 -8.4804 13 7 2.6772 -1.0540 -8.6378 14 14 1.4794 1.0568 -9.9723 15 1 0.7272 2.2577 -9.5282 16 1 2.6868 1.4794 -10.7265 17 1 0.6138 0.2270 -10.8484 18 6 2.0400 -0.7212 1.2493 19 7 1.6525 0.0355 2.4423 20 6 1.9965 -0.4129 3.6660 21 8 2.6225 -1.4455 3.7795 22 6 1.6032 0.3686 4.8929 23 6 2.1120 -0.3533 6.1423 24 1 1.7422 -1.3784 6.1630 25 6 1.6720 0.4040 7.4161 26 6 2.9138 0.2866 8.3353 27 7 4.0509 0.4110 7.3879 28 6 5.2822 -0.1418 7.9677 29 6 3.6515 -0.3396 6.1777 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1264 -0.7996 -1.2056 34 1 1.6053 -1.7199 -1.2950 35 1 1.9882 0.9872 -2.3967 36 1 3.2126 -0.7039 -3.6400 37 1 1.6921 -1.6248 -3.7299 38 1 2.5405 -1.0620 -6.2251 39 1 2.9120 -1.3568 -9.5290 40 1 3.1264 -0.7994 1.2056 41 1 1.6054 -1.7198 1.2952 42 1 1.1521 0.8615 2.3516 43 1 2.0418 1.3653 4.8448 44 1 0.5173 0.4513 4.9384 45 1 1.4575 1.4484 7.1893 46 1 0.8075 -0.0782 7.8724 47 1 2.9329 -0.6824 8.8341 48 1 2.9321 1.0947 9.0666 49 1 6.0880 -0.0799 7.2363 50 1 5.5534 0.4287 8.8561 51 1 5.1189 -1.1842 8.2411 52 1 4.0307 -1.3600 6.2317 53 1 4.0390 0.1567 5.2881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698772147.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = -109.582090 kcal Electronic energy + Delta-G solvation = -28606.613017 eV Core-core repulsion = 24511.191673 eV Total energy + Delta-G solvation = -4095.421344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.09224 -40.17580 -39.60609 -38.21569 -36.17571 -35.62412 -34.35570 -33.41434 -33.11187 -30.88221 -28.93428 -28.50061 -27.35915 -26.55826 -25.65569 -24.22640 -22.18942 -21.74338 -21.57093 -21.03868 -20.58802 -19.88407 -18.01855 -17.79588 -17.35848 -16.97838 -16.91841 -16.56490 -16.35736 -16.28474 -15.96174 -15.55636 -15.24256 -15.18776 -15.15182 -14.55471 -14.52688 -14.09608 -14.01317 -13.90380 -13.62943 -13.48379 -13.38065 -13.16243 -13.00851 -12.84992 -12.74161 -12.41803 -12.40391 -12.33020 -12.17605 -12.11178 -11.99612 -11.92343 -11.72802 -11.70528 -11.52486 -11.50986 -10.80770 -10.33970 -10.04007 -10.01322 -9.44823 -9.30085 -8.46743 -5.95499 1.36928 1.42305 1.56537 1.71207 2.05451 2.21247 2.30747 2.96116 3.10067 3.20831 3.53414 3.59719 3.66985 3.84486 3.88022 3.96040 4.06894 4.11181 4.32988 4.34634 4.41076 4.45263 4.47803 4.50053 4.53458 4.57978 4.59110 4.63843 4.68043 4.77959 4.82330 4.84398 4.89889 4.93626 4.97905 5.00058 5.08336 5.10199 5.18806 5.29416 5.33078 5.41333 5.49091 5.55752 5.88713 5.90859 6.03797 6.10147 6.42004 6.60067 6.61033 7.12762 7.31680 7.56480 8.11475 8.70922 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.035171 B = 0.001313 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.919194 B =21312.956314 C =21602.565417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.083 0.917 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.132 3.868 19 N -0.719 5.719 20 C 0.506 3.494 21 O -0.584 6.584 22 C -0.124 4.124 23 C -0.082 4.082 24 H 0.068 0.932 25 C -0.112 4.112 26 C 0.029 3.971 27 N -0.538 5.538 28 C 0.014 3.986 29 C 0.052 3.948 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.345 0.655 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.093 0.907 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.026 0.974 52 H 0.027 0.973 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 0.992 33.594 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.371 5.371 20 C 0.294 3.706 21 O -0.465 6.465 22 C -0.163 4.163 23 C -0.101 4.101 24 H 0.087 0.913 25 C -0.150 4.150 26 C -0.099 4.099 27 N -0.262 5.262 28 C -0.134 4.134 29 C -0.076 4.076 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.252 0.748 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.061 0.939 48 H 0.112 0.888 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.044 0.956 52 H 0.045 0.955 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.574 1.099 33.429 33.452 hybrid contribution 0.985 -0.701 -1.100 1.635 sum 0.411 0.398 32.329 32.334 Atomic orbital electron populations 1.21699 0.93792 1.01842 1.01943 1.21200 0.97330 1.00013 0.92046 0.89841 1.21976 0.98084 0.97832 0.88452 1.60046 1.64609 1.05933 1.00236 1.21523 0.99041 0.98051 0.88178 1.20877 0.83872 0.87623 0.85068 1.90486 1.45492 1.28346 1.86505 1.41947 1.50033 1.24363 1.04782 1.19720 1.34338 1.06978 0.85308 0.90252 1.26040 0.96431 0.97561 1.01216 1.69682 1.39029 1.22517 1.24976 0.84866 0.78221 0.78004 0.77223 1.19697 1.19618 1.19668 1.21185 0.99311 0.95182 0.83578 1.45972 1.57838 1.28072 1.05264 1.21308 0.78253 0.85405 0.85650 1.90700 1.41890 1.26519 1.87355 1.21790 1.04733 1.00044 0.89764 1.21734 0.94026 0.99653 0.94725 0.91325 1.22587 0.97250 1.01775 0.93403 1.23350 0.90197 1.00913 0.95425 1.64785 1.04001 1.51894 1.05508 1.22531 0.92666 0.97648 1.00570 1.22766 0.95817 0.95514 0.93505 0.92909 0.93208 0.91452 0.94289 0.90477 0.83683 0.91723 0.87979 0.77016 0.91328 0.92432 0.92151 0.74826 0.86818 0.85894 0.89159 0.89272 0.93918 0.88849 0.91778 0.90053 0.95576 0.95462 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.95 71.98 0.64 -1.80 16 2 C -0.09 -1.49 2.57 -10.79 -0.03 -1.52 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.07 1.42 5.07 86.30 0.44 1.86 16 5 N -0.68 -20.11 5.58 -517.94 -2.89 -23.00 16 6 C 0.06 2.17 6.17 85.55 0.53 2.70 16 7 C 0.44 20.71 7.82 87.66 0.69 21.39 16 8 O -0.62 -34.12 15.78 -3.08 -0.05 -34.17 16 9 N -0.57 -29.46 5.29 -306.98 -1.62 -31.09 16 10 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 14 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 C 0.13 2.25 5.06 86.38 0.44 2.69 16 19 N -0.72 -9.89 5.28 -463.05 -2.45 -12.33 16 20 C 0.51 8.59 7.34 87.65 0.64 9.24 16 21 O -0.58 -15.16 15.07 -3.04 -0.05 -15.21 16 22 C -0.12 -1.21 4.90 29.85 0.15 -1.06 16 23 C -0.08 -1.06 2.62 -9.92 -0.03 -1.08 16 24 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 25 C -0.11 -0.94 6.61 31.80 0.21 -0.73 16 26 C 0.03 0.31 6.56 86.65 0.57 0.88 16 27 N -0.54 -8.21 5.55 -909.16 -5.05 -13.25 16 28 C 0.01 0.19 9.40 127.69 1.20 1.39 16 29 C 0.05 0.91 5.28 86.45 0.46 1.36 16 30 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.89 7.19 -2.39 -0.02 0.87 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.34 10.69 8.43 -89.69 -0.76 9.94 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.40 19.34 7.90 -92.71 -0.73 18.60 16 39 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.41 3.47 7.66 -92.71 -0.71 2.76 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 0.57 7.86 -2.38 -0.02 0.55 16 46 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.04 0.47 7.96 -2.39 -0.02 0.45 16 48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 51 H 0.03 0.35 8.00 -2.39 -0.02 0.33 16 52 H 0.03 0.57 7.73 -2.39 -0.02 0.55 16 53 H 0.06 1.25 7.28 -2.39 -0.02 1.23 16 Total: -1.00 -73.14 425.24 -3.89 -77.04 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -1.29 Total: 39.67 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 7.18 Total: 16.93 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -11.72 Total: -129.17 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -0.09 Total: -49.38 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -73.14 -3.89 -77.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698772147.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.545 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds