Wall clock time and date at job start Sat Apr 11 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46850 * 2 1 4 4 C 1.52995 * 109.47157 * 240.00188 * 2 1 3 5 5 N 1.46908 * 109.46985 * 184.16379 * 4 2 1 6 6 C 1.46899 * 110.99746 * 159.84968 * 5 4 2 7 7 C 1.46895 * 110.99950 * 283.80097 * 5 4 2 8 8 C 1.50698 * 109.47025 * 169.99976 * 7 5 4 9 9 O 1.21290 * 120.00181 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99953 * 180.02562 * 8 7 5 11 11 C 1.37100 * 120.00111 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00083 * 359.97438 * 11 10 8 13 13 C 1.38954 * 120.00010 * 180.02562 * 11 10 8 14 14 N 1.31412 * 119.99717 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99883 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47226 * 90.00434 * 15 13 11 17 17 H 1.48500 * 109.46911 * 210.00381 * 15 13 11 18 18 H 1.48499 * 109.47438 * 330.00145 * 15 13 11 19 19 N 1.46496 * 109.46896 * 119.99909 * 2 1 3 20 20 C 1.34783 * 120.00220 * 271.64522 * 19 2 1 21 21 O 1.21281 * 119.99650 * 0.02562 * 20 19 2 22 22 C 1.50699 * 120.00079 * 180.02562 * 20 19 2 23 23 H 1.09002 * 109.45909 * 320.01995 * 22 20 19 24 24 C 1.53039 * 109.46171 * 79.99892 * 22 20 19 25 25 C 1.53123 * 109.27600 * 179.19468 * 24 22 20 26 26 C 1.53123 * 109.15893 * 302.34703 * 25 24 22 27 27 C 1.53033 * 109.27902 * 57.65882 * 26 25 24 28 28 N 1.46843 * 109.46106 * 200.05498 * 22 20 19 29 29 C 1.46900 * 111.00062 * 54.14433 * 28 22 20 30 30 H 1.08998 * 109.47365 * 299.99964 * 1 2 3 31 31 H 1.09004 * 109.47184 * 59.99874 * 1 2 3 32 32 H 1.09004 * 109.47626 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47481 * 64.16527 * 4 2 1 34 34 H 1.09005 * 109.47047 * 304.16059 * 4 2 1 35 35 H 1.09005 * 109.46760 * 189.54391 * 6 5 4 36 36 H 1.09005 * 109.47309 * 309.54087 * 6 5 4 37 37 H 1.08994 * 109.47329 * 69.54367 * 6 5 4 38 38 H 1.09009 * 109.46981 * 49.99847 * 7 5 4 39 39 H 1.08996 * 109.47020 * 290.00360 * 7 5 4 40 40 H 0.97001 * 120.00171 * 359.97438 * 10 8 7 41 41 H 0.96999 * 119.99876 * 179.97438 * 14 13 11 42 42 H 0.97000 * 120.00045 * 91.64804 * 19 2 1 43 43 H 1.08991 * 109.50266 * 299.13859 * 24 22 20 44 44 H 1.09003 * 109.49751 * 59.25565 * 24 22 20 45 45 H 1.09000 * 109.51930 * 62.25018 * 25 24 22 46 46 H 1.08997 * 109.52038 * 182.37957 * 25 24 22 47 47 H 1.08998 * 109.49717 * 177.59828 * 26 25 24 48 48 H 1.08999 * 109.50331 * 297.71393 * 26 25 24 49 49 H 1.08995 * 109.46499 * 60.82928 * 27 26 25 50 50 H 1.08997 * 109.46455 * 180.81620 * 27 26 25 51 51 H 1.08994 * 109.46973 * 60.00279 * 29 28 22 52 52 H 1.09001 * 109.46757 * 179.97438 * 29 28 22 53 53 H 1.09001 * 109.46910 * 299.99751 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5056 -0.8089 -1.2000 6 6 3.9995 -1.8706 -2.0869 7 6 4.1217 0.4828 -1.5313 8 6 5.5981 0.4260 -1.2347 9 8 6.0888 -0.5904 -0.7906 10 7 6.3731 1.5049 -1.4621 11 6 7.7164 1.4530 -1.1928 12 1 8.1535 0.5477 -0.7981 13 6 8.5154 2.5656 -1.4267 14 7 9.8028 2.5160 -1.1681 15 14 7.7593 4.1316 -2.1087 16 1 7.3146 4.9962 -0.9863 17 1 8.7695 4.8559 -2.9212 18 1 6.5928 3.7878 -2.9610 19 7 2.0183 -0.6906 1.1962 20 6 2.2113 -0.0034 2.3395 21 8 1.9803 1.1866 2.3781 22 6 2.7141 -0.7137 3.5698 23 1 2.2345 -1.6895 3.6472 24 6 4.2301 -0.8972 3.4688 25 6 4.7392 -1.6012 4.7298 26 6 4.3511 -0.7740 5.9585 27 6 2.8317 -0.5942 5.9873 28 7 2.3945 0.0842 4.7604 29 6 0.9603 0.3977 4.8146 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7389 -0.1661 -2.1377 34 1 1.6170 -1.7251 -1.2873 35 1 5.0629 -2.0288 -1.9070 36 1 3.4558 -2.7938 -1.8863 37 1 3.8464 -1.5771 -3.1254 38 1 3.6609 1.2692 -0.9333 39 1 3.9716 0.6961 -2.5896 40 1 5.9807 2.3179 -1.8169 41 1 10.3606 3.2925 -1.3317 42 1 2.2027 -1.6424 1.1654 43 1 4.4659 -1.5026 2.5937 44 1 4.7093 0.0776 3.3776 45 1 4.2896 -2.5916 4.8006 46 1 5.8239 -1.6961 4.6811 47 1 4.6735 -1.2914 6.8620 48 1 4.8323 0.2027 5.9064 49 1 2.3516 -1.5705 6.0532 50 1 2.5534 0.0067 6.8530 51 1 0.3871 -0.5287 4.8505 52 1 0.7512 0.9888 5.7062 53 1 0.6787 0.9652 3.9276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699450659.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:27 Heat of formation + Delta-G solvation = -83.064909 kcal Electronic energy + Delta-G solvation = -31844.078652 eV Core-core repulsion = 27749.807180 eV Total energy + Delta-G solvation = -4094.271472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.42363 -40.50202 -39.24762 -38.08838 -36.14362 -35.57005 -34.42761 -33.74499 -32.86874 -31.20432 -29.73101 -27.94473 -27.76919 -26.48350 -25.22493 -23.92190 -23.53584 -22.02928 -21.46913 -21.14331 -20.62928 -20.15173 -18.34123 -17.77698 -17.45903 -16.85945 -16.65561 -16.44989 -16.11661 -15.85597 -15.68399 -15.57254 -15.34544 -15.13758 -14.98189 -14.93193 -14.47390 -14.32058 -14.08416 -13.98949 -13.80737 -13.57347 -13.42162 -13.14819 -13.00433 -12.89754 -12.83645 -12.66694 -12.62033 -12.44804 -12.41386 -12.32041 -11.99644 -11.85455 -11.69111 -11.67428 -11.46950 -11.35054 -10.52640 -10.34219 -10.22928 -9.92050 -9.24773 -9.18180 -8.41967 -6.01279 1.26490 1.33004 1.40053 1.69003 1.96325 2.18056 2.20699 2.64407 2.98293 3.14242 3.22185 3.71389 3.82729 3.84698 3.94246 4.04442 4.07612 4.16017 4.20256 4.27798 4.32898 4.35661 4.47268 4.47852 4.52225 4.58344 4.59182 4.66267 4.72303 4.72871 4.77835 4.79785 4.84507 4.95142 5.03126 5.07607 5.09082 5.17866 5.23083 5.25431 5.31878 5.41840 5.52289 5.64858 5.90236 5.97905 6.01788 6.15697 6.22422 6.59631 6.69698 6.88862 7.38893 7.40236 7.97157 8.75672 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.003686 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.448510 B = 7593.932182 C = 9037.432218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 H 0.058 0.942 4 C 0.049 3.951 5 N -0.531 5.531 6 C 0.028 3.972 7 C 0.054 3.946 8 C 0.454 3.546 9 O -0.597 6.597 10 N -0.597 5.597 11 C -0.323 4.323 12 H 0.059 0.941 13 C -0.012 4.012 14 N -0.933 5.933 15 Si 0.957 3.043 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.233 1.233 19 N -0.696 5.696 20 C 0.515 3.485 21 O -0.569 6.569 22 C 0.081 3.919 23 H 0.082 0.918 24 C -0.103 4.103 25 C -0.115 4.115 26 C -0.118 4.118 27 C 0.060 3.940 28 N -0.547 5.547 29 C 0.023 3.977 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.385 0.615 41 H 0.278 0.722 42 H 0.410 0.590 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.092 0.908 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.087 0.913 51 H 0.034 0.966 52 H 0.076 0.924 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.054 -8.464 5.906 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.038 3.962 3 H 0.076 0.924 4 C -0.078 4.078 5 N -0.256 5.256 6 C -0.119 4.119 7 C -0.077 4.077 8 C 0.242 3.758 9 O -0.480 6.480 10 N -0.239 5.239 11 C -0.452 4.452 12 H 0.077 0.923 13 C -0.211 4.211 14 N -0.574 5.574 15 Si 0.778 3.222 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.157 1.157 19 N -0.347 5.347 20 C 0.302 3.698 21 O -0.448 6.448 22 C -0.031 4.031 23 H 0.099 0.901 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.067 4.067 28 N -0.273 5.273 29 C -0.125 4.125 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.220 0.780 41 H 0.088 0.912 42 H 0.245 0.755 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.105 0.895 51 H 0.052 0.948 52 H 0.095 0.905 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.309 -7.910 6.655 25.498 hybrid contribution 0.173 0.364 -1.110 1.181 sum -23.137 -7.546 5.545 24.960 Atomic orbital electron populations 1.22039 0.93038 1.03261 1.02451 1.21021 0.94626 0.96432 0.84156 0.92352 1.22583 0.86034 1.02879 0.96327 1.61439 1.06066 1.03691 1.54365 1.22441 1.01678 0.94491 0.93327 1.21825 0.90617 0.94128 1.01124 1.20809 0.89499 0.83468 0.82060 1.90494 1.76060 1.32401 1.49035 1.42093 1.07624 1.13978 1.60214 1.18986 0.83270 1.00710 1.42216 0.92338 1.26007 0.95547 1.02025 0.97530 1.69790 1.06130 1.32467 1.49061 0.85465 0.79521 0.77781 0.79427 1.18828 1.19608 1.15680 1.45741 1.66307 1.12992 1.09678 1.20692 0.76504 0.87245 0.85397 1.90632 1.52494 1.16629 1.85056 1.21510 0.97109 0.95410 0.89021 0.90079 1.21441 0.92507 1.00455 0.99714 1.21561 1.01128 0.99201 0.93369 1.21630 0.95274 1.00184 0.98506 1.22183 0.95750 0.97513 0.91291 1.61567 1.18178 1.45865 1.01697 1.22470 0.86276 1.00231 1.03525 0.93851 0.90028 0.90468 0.91266 0.87381 0.93096 0.89231 0.95243 0.88528 0.90475 0.77968 0.91218 0.75470 0.91201 0.94506 0.89923 0.91822 0.88982 0.93051 0.93253 0.89475 0.94755 0.90513 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.51 71.98 0.68 -1.58 16 2 C 0.14 2.95 2.65 44.99 0.12 3.07 16 3 H 0.06 1.59 6.27 -2.39 -0.01 1.58 16 4 C 0.05 0.87 4.58 86.30 0.39 1.27 16 5 N -0.53 -14.45 4.17 -927.04 -3.87 -18.32 16 6 C 0.03 0.75 9.19 127.69 1.17 1.93 16 7 C 0.05 1.75 5.27 85.56 0.45 2.20 16 8 C 0.45 20.95 7.54 87.66 0.66 21.62 16 9 O -0.60 -32.41 13.88 -3.06 -0.04 -32.45 16 10 N -0.60 -29.39 5.09 -306.99 -1.56 -30.96 16 11 C -0.32 -19.35 10.16 84.04 0.85 -18.50 16 12 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 14 N -0.93 -57.46 13.96 21.66 0.30 -57.16 16 15 Si 0.96 40.79 27.74 68.60 1.90 42.69 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.23 -8.47 6.52 99.48 0.65 -7.83 16 19 N -0.70 -15.77 4.79 -442.55 -2.12 -17.89 16 20 C 0.52 14.79 6.26 87.66 0.55 15.34 16 21 O -0.57 -20.78 14.13 -3.03 -0.04 -20.83 16 22 C 0.08 2.02 2.24 44.19 0.10 2.12 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 C -0.10 -2.91 5.36 30.65 0.16 -2.75 16 25 C -0.12 -2.54 6.00 30.68 0.18 -2.36 16 26 C -0.12 -2.37 6.09 30.65 0.19 -2.18 16 27 C 0.06 1.13 5.46 86.32 0.47 1.60 16 28 N -0.55 -13.71 4.51 -901.61 -4.07 -17.78 16 29 C 0.02 0.50 9.10 127.69 1.16 1.66 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 1.02 7.99 -2.39 -0.02 1.00 16 34 H 0.11 1.35 7.73 -2.38 -0.02 1.33 16 35 H 0.05 1.86 6.00 -2.38 -0.01 1.85 16 36 H 0.09 1.80 7.84 -2.38 -0.02 1.78 16 37 H 0.03 0.70 8.07 -2.39 -0.02 0.68 16 38 H 0.10 3.00 6.73 -2.38 -0.02 2.98 16 39 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.39 16.24 5.76 -92.71 -0.53 15.70 16 41 H 0.28 15.70 8.31 -92.71 -0.77 14.92 16 42 H 0.41 7.68 8.64 -92.71 -0.80 6.88 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 51 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 53 H 0.06 1.76 5.63 -2.39 -0.01 1.74 16 Total: -1.00 -81.88 412.20 -2.36 -84.24 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -0.49 Total: 45.25 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 7.62 Total: 23.19 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -11.31 Total: -142.10 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.09 Total: -53.28 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.90 Total: 42.69 kcal Total: -81.88 -2.36 -84.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699450659.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.178 kcal (2) G-P(sol) polarization free energy of solvation -81.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds