Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46893 * 109.46898 * 2 1 4 4 C 1.46900 * 111.00195 * 66.04584 * 3 2 1 5 5 C 1.46900 * 110.99931 * 190.00037 * 3 2 1 6 6 C 1.53000 * 109.47497 * 170.00017 * 5 3 2 7 7 C 1.50699 * 109.47469 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99876 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00190 * 179.97438 * 7 6 5 10 10 C 1.48149 * 127.83508 * 359.97438 * 9 7 6 11 11 C 1.54388 * 104.61486 * 140.41341 * 10 9 7 12 12 H 1.09004 * 110.34441 * 142.73698 * 11 10 9 13 13 C 1.53002 * 110.34305 * 264.99851 * 11 10 9 14 14 C 1.54284 * 104.96219 * 23.86513 * 11 10 9 15 15 H 1.08997 * 110.34676 * 118.97569 * 14 11 10 16 16 N 1.46898 * 110.34691 * 241.13189 * 14 11 10 17 17 C 1.46904 * 111.00201 * 204.99986 * 16 14 11 18 18 C 1.50697 * 109.46892 * 179.97438 * 17 16 14 19 19 O 1.21291 * 120.00763 * 359.72740 * 18 17 16 20 20 N 1.34784 * 119.99774 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99968 * 179.72830 * 20 18 17 22 22 H 1.08005 * 120.00127 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00407 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47025 * 89.99899 * 25 23 21 27 27 H 1.48496 * 109.47352 * 210.00610 * 25 23 21 28 28 H 1.48511 * 109.46991 * 330.00512 * 25 23 21 29 29 C 1.48146 * 127.83668 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47336 * 60.00540 * 1 2 3 31 31 H 1.09007 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47353 * 299.99861 * 1 2 3 33 33 H 1.09004 * 109.47136 * 240.00079 * 2 1 3 34 34 H 1.08998 * 109.46777 * 119.99964 * 2 1 3 35 35 H 1.09003 * 109.47129 * 183.95416 * 4 3 2 36 36 H 1.08994 * 109.47016 * 303.95285 * 4 3 2 37 37 H 1.09000 * 109.47056 * 63.95746 * 4 3 2 38 38 H 1.09000 * 109.47582 * 49.99674 * 5 3 2 39 39 H 1.09000 * 109.47098 * 289.99885 * 5 3 2 40 40 H 1.08999 * 109.47096 * 59.99827 * 6 5 3 41 41 H 1.09000 * 109.46839 * 300.00027 * 6 5 3 42 42 H 1.08993 * 110.40932 * 21.63248 * 10 9 7 43 43 H 1.08999 * 110.50649 * 259.24176 * 10 9 7 44 44 H 1.09001 * 109.47232 * 175.54063 * 13 11 10 45 45 H 1.09007 * 109.46899 * 295.53520 * 13 11 10 46 46 H 1.08993 * 109.47674 * 55.53522 * 13 11 10 47 47 H 1.00898 * 111.00447 * 81.04190 * 16 14 11 48 48 H 1.09001 * 109.46900 * 60.00109 * 17 16 14 49 49 H 1.08993 * 109.47169 * 299.99830 * 17 16 14 50 50 H 0.97005 * 119.99846 * 359.72750 * 20 18 17 51 51 H 0.96990 * 120.00373 * 180.02562 * 24 23 21 52 52 H 1.09000 * 110.40428 * 100.80920 * 29 9 7 53 53 H 1.08991 * 110.40850 * 338.37674 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6701 2.0669 1.2533 5 6 3.4684 1.4311 -0.2382 6 6 3.8998 2.8791 -0.4791 7 6 5.3862 2.9266 -0.7228 8 8 6.0364 1.9030 -0.7059 9 7 5.9929 4.1064 -0.9605 10 6 5.3733 5.4507 -1.0220 11 6 6.3896 6.3803 -0.3246 12 1 6.4260 7.3469 -0.8272 13 6 6.0219 6.5596 1.1497 14 6 7.7460 5.6567 -0.4548 15 1 8.4492 6.2685 -1.0198 16 7 8.2908 5.3497 0.8744 17 6 9.7539 5.2254 0.8278 18 6 10.2754 4.9116 2.2064 19 8 9.5048 4.8072 3.1372 20 7 11.5988 4.7519 2.4060 21 6 12.0738 4.4720 3.6612 22 1 11.3876 4.3799 4.4902 23 6 13.4380 4.3068 3.8670 24 7 14.2730 4.4194 2.8584 25 14 14.0854 3.9261 5.5773 26 1 14.1298 2.4548 5.7736 27 1 15.4525 4.4868 5.7253 28 1 13.1884 4.5342 6.5928 29 6 7.4305 4.3531 -1.2196 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9823 3.1098 1.1987 36 1 0.5919 2.0179 1.4051 37 1 2.1769 1.5791 2.0859 38 1 3.7122 0.8289 -1.1134 39 1 3.9924 1.0359 0.6321 40 1 3.6561 3.4813 0.3961 41 1 3.3758 3.2743 -1.3494 42 1 4.4237 5.4563 -0.4870 43 1 5.2270 5.7567 -2.0579 44 1 6.7901 7.1523 1.6463 45 1 5.0626 7.0716 1.2253 46 1 5.9510 5.5827 1.6279 47 1 7.8690 4.5157 1.2544 48 1 10.1873 6.1632 0.4805 49 1 10.0287 4.4227 0.1436 50 1 12.2151 4.8350 1.6616 51 1 15.2252 4.3038 3.0019 52 1 7.6068 4.4865 -2.2870 53 1 8.0328 3.5307 -0.8339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700277199.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = -85.368041 kcal Electronic energy + Delta-G solvation = -30206.771355 eV Core-core repulsion = 26112.400012 eV Total energy + Delta-G solvation = -4094.371344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.36199 -40.19285 -39.36093 -38.49892 -36.16568 -35.44608 -33.49509 -33.29271 -33.05910 -30.82000 -29.77407 -28.17620 -27.37593 -27.15574 -25.73864 -24.41636 -23.14800 -21.74853 -21.19306 -20.64875 -20.13933 -19.90796 -18.41885 -17.71795 -17.60557 -16.93154 -16.81916 -16.61158 -16.26114 -16.10248 -15.85574 -15.62241 -15.29569 -15.19245 -15.09229 -14.53692 -14.46185 -14.09012 -13.99973 -13.72676 -13.57268 -13.32327 -13.25727 -13.16709 -13.07242 -12.88332 -12.84152 -12.70445 -12.67862 -12.44933 -12.30499 -12.14800 -12.03181 -11.90154 -11.77779 -11.74912 -11.53767 -11.48794 -10.94779 -10.37873 -10.04252 -9.88546 -9.41729 -9.22908 -8.49201 -5.97975 1.35410 1.38925 1.51930 1.57011 1.88651 2.02836 2.26818 2.88083 2.91617 3.17750 3.42216 3.58313 3.61654 3.80812 3.91045 4.05408 4.13206 4.15666 4.24315 4.28006 4.33796 4.36935 4.46901 4.49906 4.51866 4.55852 4.59994 4.60697 4.62337 4.69069 4.78929 4.82521 4.87620 4.89547 4.97175 5.00104 5.01243 5.11771 5.16190 5.26524 5.35661 5.37930 5.40823 5.69346 5.90096 5.97469 6.04284 6.11752 6.26470 6.54178 6.57630 7.09777 7.10045 7.53456 8.09141 8.68186 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002168 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.903370 B =12909.189425 C =14065.576149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.541 5.541 4 C 0.013 3.987 5 C 0.074 3.926 6 C -0.117 4.117 7 C 0.525 3.475 8 O -0.597 6.597 9 N -0.620 5.620 10 C 0.103 3.897 11 C -0.089 4.089 12 H 0.118 0.882 13 C -0.118 4.118 14 C 0.074 3.926 15 H 0.117 0.883 16 N -0.660 5.660 17 C 0.063 3.937 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.273 1.273 29 C 0.073 3.927 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.016 0.984 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.335 0.665 48 H 0.114 0.886 49 H 0.058 0.942 50 H 0.397 0.603 51 H 0.278 0.722 52 H 0.097 0.903 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.168 2.169 -13.726 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 N -0.266 5.266 4 C -0.134 4.134 5 C -0.055 4.055 6 C -0.156 4.156 7 C 0.316 3.684 8 O -0.478 6.478 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.109 4.109 12 H 0.136 0.864 13 C -0.176 4.176 14 C -0.037 4.037 15 H 0.134 0.866 16 N -0.290 5.290 17 C -0.070 4.070 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.192 1.192 28 H -0.198 1.198 29 C -0.052 4.052 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.154 0.846 48 H 0.131 0.869 49 H 0.076 0.924 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.116 0.884 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.401 2.362 -13.265 28.753 hybrid contribution 1.851 -1.857 0.947 2.787 sum -23.550 0.505 -12.318 26.582 Atomic orbital electron populations 1.21755 0.93176 1.02363 1.02621 1.22178 0.97363 0.88222 1.00619 1.62089 1.12361 1.16668 1.35455 1.22592 1.02332 0.99651 0.88865 1.21704 0.87449 0.95952 1.00351 1.21524 0.89334 0.98783 1.06002 1.20904 0.91056 0.81372 0.75080 1.90710 1.68251 1.34767 1.54109 1.49049 1.09465 1.07389 1.69452 1.22847 0.97300 0.79157 1.02586 1.22214 0.92031 0.99423 0.97190 0.86373 1.21426 1.00604 1.00467 0.95086 1.22821 0.98133 0.94883 0.87845 0.86555 1.60363 1.02630 1.43184 1.22862 1.21620 0.90232 1.02711 0.92408 1.20943 0.82380 0.82414 0.91913 1.90489 1.57203 1.57516 1.45930 1.41931 1.06247 1.62574 1.10274 1.19646 0.92046 1.47198 0.87531 0.90532 1.26051 0.95441 0.96627 1.03217 1.69666 1.04108 1.49691 1.32528 0.84929 0.77679 0.78542 0.77180 1.19810 1.19249 1.19791 1.23155 0.82448 0.97960 1.01635 0.91761 0.91282 0.92257 0.90860 0.95594 0.90153 0.89609 0.96583 0.91147 0.96503 0.87401 0.85678 0.88321 0.87805 0.93561 0.91519 0.95479 0.84618 0.86850 0.92427 0.76958 0.91261 0.88448 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.84 71.98 0.71 -0.88 16 2 C 0.04 0.68 5.68 86.30 0.49 1.17 16 3 N -0.54 -9.04 4.76 -922.48 -4.39 -13.43 16 4 C 0.01 0.19 9.13 127.69 1.17 1.36 16 5 C 0.07 1.53 4.25 86.30 0.37 1.90 16 6 C -0.12 -2.01 4.60 29.85 0.14 -1.88 16 7 C 0.53 13.31 7.91 87.66 0.69 14.01 16 8 O -0.60 -21.37 16.25 -3.02 -0.05 -21.42 16 9 N -0.62 -12.75 3.32 -807.96 -2.68 -15.43 16 10 C 0.10 1.22 6.46 86.53 0.56 1.78 16 11 C -0.09 -1.33 3.66 -9.89 -0.04 -1.36 16 12 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 13 C -0.12 -2.42 8.10 71.98 0.58 -1.84 16 14 C 0.07 1.51 3.37 45.83 0.15 1.66 16 15 H 0.12 1.90 7.82 -2.39 -0.02 1.89 16 16 N -0.66 -20.47 4.10 -490.89 -2.01 -22.48 16 17 C 0.06 2.16 6.02 85.56 0.51 2.67 16 18 C 0.44 21.37 7.82 87.65 0.69 22.05 16 19 O -0.62 -35.82 15.78 -3.06 -0.05 -35.87 16 20 N -0.57 -30.23 5.29 -306.97 -1.62 -31.85 16 21 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.46 13.05 21.66 0.28 -50.17 16 25 Si 0.99 43.98 29.55 68.60 2.03 46.01 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 C 0.07 1.59 6.49 86.54 0.56 2.15 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.62 6.47 -2.39 -0.02 0.61 16 33 H 0.07 1.13 7.93 -2.38 -0.02 1.12 16 34 H 0.03 0.44 8.12 -2.39 -0.02 0.42 16 35 H 0.08 0.97 6.47 -2.39 -0.02 0.96 16 36 H 0.09 0.98 6.30 -2.39 -0.02 0.96 16 37 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.07 1.60 7.89 -2.39 -0.02 1.58 16 39 H 0.02 0.43 8.08 -2.39 -0.02 0.41 16 40 H 0.11 1.57 6.36 -2.39 -0.02 1.56 16 41 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.10 0.88 7.02 -2.39 -0.02 0.86 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 1.21 7.84 -2.39 -0.02 1.19 16 45 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.03 0.69 7.57 -2.39 -0.02 0.67 16 47 H 0.34 12.36 7.74 -89.70 -0.69 11.66 16 48 H 0.11 3.35 8.07 -2.39 -0.02 3.33 16 49 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 50 H 0.40 19.78 7.90 -92.70 -0.73 19.05 16 51 H 0.28 14.25 8.31 -92.72 -0.77 13.48 16 52 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 53 H 0.05 1.38 7.73 -2.39 -0.02 1.37 16 Total: -1.00 -77.46 419.97 -1.15 -78.61 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.52 Total: 42.25 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 7.86 Total: 23.78 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -10.43 Total: -133.36 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -0.10 Total: -57.29 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -77.46 -1.15 -78.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700277199.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.759 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds