Wall clock time and date at job start Sat Apr 11 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47474 * 2 1 4 4 C 1.52996 * 109.47345 * 119.99945 * 2 1 3 5 5 N 1.46499 * 109.47352 * 174.99780 * 4 2 1 6 6 C 1.46500 * 120.00340 * 270.00325 * 5 4 2 7 7 C 1.34784 * 119.99754 * 90.00152 * 5 4 2 8 8 O 1.21279 * 120.00066 * 0.02562 * 7 5 4 9 9 C 1.50696 * 119.99899 * 179.97438 * 7 5 4 10 10 N 1.46901 * 109.46828 * 180.02562 * 9 7 5 11 11 C 1.46899 * 111.00023 * 66.04929 * 10 9 7 12 12 C 1.46908 * 110.99809 * 190.00228 * 10 9 7 13 13 C 1.53779 * 113.61513 * 68.30536 * 12 10 9 14 14 C 1.53785 * 87.17314 * 140.02404 * 13 12 10 15 15 C 1.53783 * 87.07924 * 334.52559 * 14 13 12 16 16 N 1.46902 * 109.47172 * 240.00232 * 2 1 3 17 17 C 1.46905 * 111.00148 * 85.00127 * 16 2 1 18 18 C 1.50694 * 109.47181 * 180.02562 * 17 16 2 19 19 O 1.21298 * 119.99982 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00284 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00572 * 179.97438 * 20 18 17 22 22 H 1.08009 * 119.99963 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00581 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99558 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00274 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47392 * 59.99949 * 25 23 21 27 27 H 1.48510 * 109.47187 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47046 * 299.99825 * 25 23 21 29 29 H 1.09003 * 109.47152 * 299.99972 * 1 2 3 30 30 H 1.09004 * 109.47120 * 60.00031 * 1 2 3 31 31 H 1.09007 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47042 * 55.00419 * 4 2 1 33 33 H 1.08998 * 109.47174 * 295.00375 * 4 2 1 34 34 H 1.08999 * 109.46653 * 269.99946 * 6 5 4 35 35 H 1.08997 * 109.47065 * 29.99924 * 6 5 4 36 36 H 1.08998 * 109.46960 * 149.99979 * 6 5 4 37 37 H 1.09000 * 109.47369 * 60.00208 * 9 7 5 38 38 H 1.08995 * 109.47230 * 299.99789 * 9 7 5 39 39 H 1.09008 * 109.46998 * 189.42143 * 11 10 9 40 40 H 1.09001 * 109.46857 * 309.41903 * 11 10 9 41 41 H 1.09001 * 109.47601 * 69.42274 * 11 10 9 42 42 H 1.09003 * 112.90131 * 297.05202 * 12 10 9 43 43 H 1.08996 * 113.61516 * 25.43455 * 13 12 10 44 44 H 1.09000 * 113.60962 * 254.61491 * 13 12 10 45 45 H 1.08997 * 113.61347 * 89.07326 * 14 13 12 46 46 H 1.08998 * 113.61355 * 219.98027 * 14 13 12 47 47 H 1.08996 * 113.61479 * 139.98171 * 15 14 13 48 48 H 1.09007 * 113.61509 * 270.80264 * 15 14 13 49 49 H 1.00892 * 111.00287 * 321.04242 * 16 2 1 50 50 H 1.08999 * 109.46570 * 300.00277 * 17 16 2 51 51 H 1.08999 * 109.46818 * 59.99688 * 17 16 2 52 52 H 0.97003 * 119.99723 * 359.97438 * 20 18 17 53 53 H 0.97004 * 119.99830 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5611 7 6 4.2676 0.1493 1.7156 8 8 3.7495 1.1139 2.2370 9 6 5.7694 0.0408 1.6557 10 7 6.3712 1.2205 2.2916 11 6 6.0800 1.2486 3.7311 12 6 7.8188 1.2698 2.0462 13 6 8.1858 1.5433 0.5781 14 6 9.3082 2.4517 1.1074 15 6 8.4563 2.6332 2.3747 16 7 2.0196 -0.6925 -1.1995 17 6 2.0825 0.2227 -2.3469 18 6 2.5873 -0.5217 -3.5560 19 8 2.8677 -1.6987 -3.4703 20 7 2.7283 0.1206 -4.7325 21 6 3.1881 -0.5564 -5.8323 22 1 3.4378 -1.6044 -5.7560 23 6 3.3329 0.1056 -7.0454 24 7 3.0296 1.3809 -7.1381 25 14 3.9587 -0.8171 -8.5441 26 1 3.0368 -1.9387 -8.8555 27 1 4.0228 0.1082 -9.7040 28 1 5.3147 -1.3539 -8.2643 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 4.2822 -2.7687 1.3096 35 1 3.4757 -2.3721 -0.2268 36 1 5.0851 -1.7020 0.1324 37 1 6.0886 -0.0139 0.6149 38 1 6.0900 -0.8583 2.1818 39 1 6.3897 2.2081 4.1458 40 1 5.0098 1.1135 3.8880 41 1 6.6243 0.4455 4.2278 42 1 8.3515 0.4231 2.4791 43 1 7.4131 2.0797 0.0275 44 1 8.5498 0.6632 0.0479 45 1 10.2474 1.9275 1.2840 46 1 9.4357 3.3686 0.5320 47 1 9.0386 2.6324 3.2961 48 1 7.7584 3.4685 2.3158 49 1 1.4496 -1.4978 -1.4101 50 1 1.0871 0.6164 -2.5525 51 1 2.7588 1.0463 -2.1182 52 1 2.5044 1.0619 -4.8010 53 1 3.1310 1.8432 -7.9849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700751879.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:02 Heat of formation + Delta-G solvation = -56.745311 kcal Electronic energy + Delta-G solvation = -30822.082971 eV Core-core repulsion = 26728.952802 eV Total energy + Delta-G solvation = -4093.130169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.17890 -40.21350 -39.81220 -38.07170 -36.11997 -35.80107 -35.68619 -33.27788 -32.20967 -29.76376 -28.17292 -27.92395 -27.30259 -26.37143 -26.06834 -25.47807 -23.34166 -21.98723 -21.10802 -20.26457 -20.03336 -19.87001 -18.20071 -17.72312 -17.29637 -17.05864 -16.77983 -16.42733 -16.34185 -16.19145 -15.97342 -15.52243 -15.46503 -15.24345 -14.83974 -14.51604 -14.30489 -13.94496 -13.69483 -13.64451 -13.52414 -13.36383 -13.32817 -13.25130 -13.04555 -12.84889 -12.84820 -12.75458 -12.58417 -12.53166 -12.44671 -12.38654 -12.11865 -11.90704 -11.77471 -11.47981 -11.42796 -11.11350 -10.62042 -10.34681 -10.00559 -9.66626 -9.27455 -9.11259 -8.45336 -5.94268 1.40468 1.42185 1.53220 1.70001 2.06262 2.08541 2.29554 2.91727 3.02244 3.21969 3.56109 3.57489 3.68983 3.81425 3.94622 3.96648 4.02895 4.14780 4.25534 4.28259 4.31941 4.34443 4.43714 4.47402 4.55646 4.56889 4.59497 4.63092 4.67525 4.72319 4.86189 4.87333 4.92384 4.92841 4.99531 5.03918 5.08272 5.09699 5.22217 5.22747 5.31646 5.41538 5.49446 5.66402 5.87928 5.95780 6.09048 6.20110 6.46937 6.55462 6.60295 7.13142 7.30839 7.57184 8.11256 8.72028 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.002953 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.232147 B = 9479.978685 C =11730.192111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 H 0.059 0.941 4 C 0.132 3.868 5 N -0.595 5.595 6 C 0.086 3.914 7 C 0.509 3.491 8 O -0.567 6.567 9 C 0.043 3.957 10 N -0.533 5.533 11 C 0.029 3.971 12 C 0.052 3.948 13 C -0.137 4.137 14 C -0.134 4.134 15 C -0.121 4.121 16 N -0.659 5.659 17 C 0.069 3.931 18 C 0.444 3.556 19 O -0.614 6.614 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.082 0.918 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.347 0.653 50 H 0.060 0.940 51 H 0.085 0.915 52 H 0.394 0.606 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -1.512 20.802 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.040 4.040 3 H 0.077 0.923 4 C 0.009 3.991 5 N -0.327 5.327 6 C -0.056 4.056 7 C 0.298 3.702 8 O -0.447 6.447 9 C -0.087 4.087 10 N -0.258 5.258 11 C -0.119 4.119 12 C -0.056 4.056 13 C -0.175 4.175 14 C -0.172 4.172 15 C -0.159 4.159 16 N -0.291 5.291 17 C -0.064 4.064 18 C 0.231 3.769 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.166 0.834 50 H 0.077 0.923 51 H 0.103 0.897 52 H 0.227 0.773 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.814 -1.182 20.922 21.746 hybrid contribution -0.625 -0.249 -1.059 1.255 sum 5.188 -1.431 19.863 20.579 Atomic orbital electron populations 1.22373 0.95028 1.03160 1.02734 1.21991 0.93945 0.97558 0.90523 0.92291 1.21493 0.79390 1.01792 0.96433 1.47670 1.06572 1.21624 1.56810 1.21852 0.98935 0.86864 0.97969 1.20835 0.90026 0.81835 0.77551 1.90618 1.75538 1.32173 1.46365 1.21902 0.91096 0.93698 1.02034 1.61884 1.11516 1.39156 1.13239 1.22362 1.01731 1.01168 0.86593 1.23375 0.86076 0.98519 0.97604 1.22980 0.98703 1.00405 0.95426 1.22718 0.97290 1.00127 0.97041 1.22930 0.98193 0.96198 0.98603 1.60174 1.58032 1.08759 1.02171 1.21454 1.00344 0.95292 0.89304 1.20691 0.83379 0.88000 0.84821 1.90472 1.56412 1.17796 1.85355 1.41953 1.58425 1.12521 1.08360 1.19646 1.42056 0.96007 0.88388 0.89968 1.26061 0.97286 0.96575 1.01496 1.69684 1.48766 1.09819 1.28161 0.84987 0.78814 0.77800 0.76744 1.19545 1.19764 1.19566 0.90683 0.93042 0.90967 0.88584 0.90032 0.91169 0.90280 0.91808 0.88095 0.90390 0.91178 0.91753 0.94978 0.90545 0.91315 0.91122 0.88643 0.91060 0.90317 0.90627 0.83375 0.92251 0.89726 0.77308 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.16 71.98 0.66 -2.75 16 2 C 0.07 1.73 2.89 44.91 0.13 1.86 16 3 H 0.06 1.73 7.80 -2.39 -0.02 1.72 16 4 C 0.13 2.89 5.15 86.38 0.44 3.34 16 5 N -0.60 -14.19 2.73 -846.78 -2.31 -16.50 16 6 C 0.09 1.82 9.86 127.77 1.26 3.08 16 7 C 0.51 13.83 7.31 87.65 0.64 14.47 16 8 O -0.57 -18.95 13.96 -3.03 -0.04 -18.99 16 9 C 0.04 0.98 3.93 85.56 0.34 1.32 16 10 N -0.53 -12.38 4.44 -897.94 -3.99 -16.37 16 11 C 0.03 0.62 9.09 127.69 1.16 1.78 16 12 C 0.05 0.97 3.17 45.53 0.14 1.12 16 13 C -0.14 -2.70 6.93 31.12 0.22 -2.49 16 14 C -0.13 -2.11 8.08 31.12 0.25 -1.86 16 15 C -0.12 -2.04 7.30 31.21 0.23 -1.81 16 16 N -0.66 -19.52 4.13 -495.58 -2.05 -21.57 16 17 C 0.07 2.40 5.97 85.55 0.51 2.91 16 18 C 0.44 20.70 7.82 87.66 0.69 21.39 16 19 O -0.61 -32.28 15.78 -3.09 -0.05 -32.33 16 20 N -0.58 -29.55 5.29 -306.99 -1.62 -31.18 16 21 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 25 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.10 7.45 -2.38 -0.02 1.08 16 31 H 0.07 1.24 8.13 -2.38 -0.02 1.22 16 32 H 0.10 1.68 8.07 -2.39 -0.02 1.66 16 33 H 0.08 1.84 7.42 -2.39 -0.02 1.83 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.97 6.92 -2.39 -0.02 1.96 16 36 H 0.06 1.37 6.44 -2.39 -0.02 1.35 16 37 H 0.10 2.36 6.58 -2.39 -0.02 2.34 16 38 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 39 H 0.07 1.41 7.82 -2.38 -0.02 1.39 16 40 H 0.06 1.65 5.79 -2.39 -0.01 1.63 16 41 H 0.03 0.56 8.13 -2.39 -0.02 0.55 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.35 10.37 8.17 -89.70 -0.73 9.64 16 50 H 0.06 1.89 7.44 -2.39 -0.02 1.87 16 51 H 0.08 2.97 8.05 -2.39 -0.02 2.95 16 52 H 0.39 19.61 7.90 -92.71 -0.73 18.88 16 53 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.51 421.04 -0.36 -68.87 By element: Atomic # 1 Polarization: 49.76 SS G_CDS: -0.56 Total: 49.20 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 7.95 Total: 24.18 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -9.69 Total: -135.66 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.09 Total: -51.32 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -68.51 -0.36 -68.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700751879.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.129 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds