Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 119.99978 * 2 1 4 4 O 1.21586 * 120.00004 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00207 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00115 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47049 * 180.02562 * 6 5 3 8 8 C 1.50697 * 109.47384 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99965 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00219 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63195 * 354.36536 * 10 8 7 12 12 C 1.53624 * 108.54424 * 126.37067 * 11 10 8 13 13 C 1.53039 * 109.24416 * 54.85598 * 12 11 10 14 14 C 1.53038 * 109.53584 * 298.51509 * 13 12 11 15 15 H 1.08999 * 109.49864 * 181.31947 * 14 13 12 16 16 C 1.53004 * 109.52244 * 301.39182 * 14 13 12 17 17 C 1.46927 * 120.63036 * 174.64468 * 10 8 7 18 18 H 1.09005 * 109.58786 * 113.79867 * 17 10 8 19 19 C 1.53004 * 109.58707 * 353.37383 * 17 10 8 20 20 C 1.53007 * 109.46945 * 181.87105 * 19 17 10 21 21 N 1.46504 * 109.46781 * 185.10640 * 20 19 17 22 22 C 1.36935 * 119.99714 * 179.97438 * 21 20 19 23 23 H 1.08001 * 120.00281 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99814 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00034 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00153 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46699 * 90.00535 * 26 24 22 28 28 H 1.48496 * 109.47680 * 210.00848 * 26 24 22 29 29 H 1.48506 * 109.47185 * 330.01041 * 26 24 22 30 30 H 1.08997 * 109.47099 * 300.00390 * 1 2 3 31 31 H 1.09002 * 109.46917 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47071 * 60.00723 * 1 2 3 33 33 H 0.97003 * 119.99734 * 179.97438 * 2 1 3 34 34 H 0.97002 * 119.99163 * 0.02562 * 5 3 2 35 35 H 1.08992 * 109.47440 * 300.00540 * 6 5 3 36 36 H 1.09000 * 109.46925 * 60.00559 * 6 5 3 37 37 H 1.09001 * 109.46839 * 300.00408 * 7 6 5 38 38 H 1.08999 * 109.47339 * 60.00265 * 7 6 5 39 39 H 1.09004 * 109.58724 * 246.19959 * 11 10 8 40 40 H 1.08996 * 109.58347 * 6.62536 * 11 10 8 41 41 H 1.08999 * 109.62974 * 294.86683 * 12 11 10 42 42 H 1.09001 * 109.43088 * 174.72904 * 12 11 10 43 43 H 1.08992 * 109.45929 * 178.49429 * 13 12 11 44 44 H 1.08999 * 109.44795 * 58.52622 * 13 12 11 45 45 H 1.09002 * 109.46883 * 179.85590 * 16 14 13 46 46 H 1.08995 * 109.47739 * 299.86058 * 16 14 13 47 47 H 1.08999 * 109.46917 * 59.85863 * 16 14 13 48 48 H 1.09003 * 109.46950 * 301.86714 * 19 17 10 49 49 H 1.08997 * 109.47280 * 61.87330 * 19 17 10 50 50 H 1.08997 * 109.46802 * 305.10689 * 20 19 17 51 51 H 1.08997 * 109.47163 * 65.11092 * 20 19 17 52 52 H 0.97001 * 119.99753 * 359.97438 * 21 20 19 53 53 H 0.96997 * 119.99691 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.7234 2.1564 0.0001 8 6 6.4769 3.4614 0.0001 9 8 5.8705 4.5118 0.0005 10 7 7.8246 3.4614 -0.0003 11 6 8.5733 2.2033 0.1233 12 6 9.5650 2.1079 -1.0460 13 6 10.4426 3.3616 -1.0666 14 6 9.5649 4.5971 -1.2792 15 1 10.1929 5.4873 -1.3172 16 6 8.7963 4.4581 -2.5949 17 6 8.5732 4.7202 -0.1182 18 1 9.1162 4.9105 0.8075 19 6 7.6023 5.8705 -0.3926 20 6 8.3886 7.1722 -0.5612 21 7 7.4546 8.2920 -0.7023 22 6 7.9318 9.5651 -0.8660 23 1 8.9966 9.7436 -0.8915 24 6 7.0468 10.6261 -1.0002 25 7 5.7490 10.4085 -0.9696 26 14 7.6976 12.3628 -1.2227 27 1 7.8681 12.6457 -2.6706 28 1 6.7347 13.3310 -0.6392 29 1 9.0077 12.4923 -0.5355 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8901 33 1 1.9500 -0.8401 0.0004 34 1 3.9716 0.3271 0.0005 35 1 3.9561 3.0069 -0.8904 36 1 3.9555 3.0080 0.8895 37 1 5.9867 1.5851 0.8903 38 1 5.9868 1.5844 -0.8897 39 1 9.1164 2.1925 1.0684 40 1 7.8817 1.3616 0.0874 41 1 9.0174 2.0317 -1.9853 42 1 10.1930 1.2263 -0.9179 43 1 11.1654 3.2855 -1.8787 44 1 10.9708 3.4504 -0.1173 45 1 8.1696 5.3373 -2.7442 46 1 9.5022 4.3705 -3.4207 47 1 8.1694 3.5672 -2.5569 48 1 7.0423 5.6636 -1.3046 49 1 6.9107 5.9696 0.4440 50 1 9.0183 7.3322 0.3140 51 1 9.0139 7.1062 -1.4516 52 1 6.4982 8.1316 -0.6798 53 1 5.1307 11.1500 -1.0631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707149062.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -75.980967 kcal Electronic energy + Delta-G solvation = -30851.063538 eV Core-core repulsion = 26757.099249 eV Total energy + Delta-G solvation = -4093.964290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.84851 -40.96425 -38.95413 -37.02144 -36.37256 -35.58614 -34.93479 -34.10038 -32.59707 -31.81435 -29.80256 -27.99894 -27.45908 -26.39080 -25.29854 -24.46155 -23.58726 -22.15544 -21.98886 -20.98134 -19.72920 -19.30236 -19.05960 -17.93398 -17.30454 -17.03640 -16.94461 -16.66645 -16.32395 -16.16356 -15.67101 -15.41709 -15.35955 -15.23742 -14.98627 -14.90843 -14.68139 -14.49039 -14.12471 -13.98592 -13.71622 -13.50317 -13.10181 -13.04562 -13.00986 -12.87666 -12.82005 -12.55417 -12.44986 -12.32550 -12.26282 -12.09859 -11.86135 -11.73538 -11.68254 -11.51853 -11.29197 -11.18713 -10.92428 -10.46659 -9.96504 -9.81340 -9.45409 -9.02631 -7.95874 -5.26972 1.42416 1.46982 1.55475 1.58827 1.71367 2.11645 2.14398 2.54208 3.31829 3.35978 3.58957 3.67155 3.82707 3.94506 3.99882 4.08595 4.09479 4.17031 4.27314 4.40448 4.46839 4.49227 4.51554 4.60858 4.65456 4.65936 4.73913 4.79604 4.82677 4.85358 4.87816 4.92096 4.96585 5.00074 5.02664 5.16707 5.24376 5.28821 5.35957 5.40070 5.42170 5.44666 5.48437 5.55413 5.59946 5.79991 6.01536 6.24827 6.54768 7.13553 7.28816 7.32536 7.58853 8.06858 8.30979 9.28315 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.002824 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.953468 B = 9911.434713 C =12788.548164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.733 5.733 3 C 0.689 3.311 4 O -0.647 6.647 5 N -0.724 5.724 6 C 0.159 3.841 7 C -0.131 4.131 8 C 0.500 3.500 9 O -0.575 6.575 10 N -0.603 5.603 11 C 0.099 3.901 12 C -0.133 4.133 13 C -0.111 4.111 14 C -0.102 4.102 15 H 0.071 0.929 16 C -0.140 4.140 17 C 0.163 3.837 18 H 0.074 0.926 19 C -0.095 4.095 20 C 0.149 3.851 21 N -0.749 5.749 22 C -0.247 4.247 23 H 0.079 0.921 24 C -0.084 4.084 25 N -0.974 5.974 26 Si 0.983 3.017 27 H -0.284 1.284 28 H -0.294 1.294 29 H -0.265 1.265 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.041 0.959 33 H 0.419 0.581 34 H 0.419 0.581 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.014 0.986 51 H 0.023 0.977 52 H 0.368 0.632 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -36.436 1.978 36.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.390 5.390 3 C 0.388 3.612 4 O -0.529 6.529 5 N -0.382 5.382 6 C 0.033 3.967 7 C -0.171 4.171 8 C 0.289 3.711 9 O -0.454 6.454 10 N -0.336 5.336 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.148 4.148 14 C -0.121 4.121 15 H 0.089 0.911 16 C -0.198 4.198 17 C 0.059 3.941 18 H 0.092 0.908 19 C -0.133 4.133 20 C 0.022 3.978 21 N -0.391 5.391 22 C -0.379 4.379 23 H 0.097 0.903 24 C -0.276 4.276 25 N -0.625 5.625 26 Si 0.810 3.190 27 H -0.211 1.211 28 H -0.221 1.221 29 H -0.190 1.190 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.060 0.940 33 H 0.255 0.745 34 H 0.257 0.743 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.032 0.968 51 H 0.041 0.959 52 H 0.199 0.801 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.930 -34.857 1.976 35.259 hybrid contribution -0.205 1.155 -0.191 1.189 sum 4.725 -33.701 1.785 34.078 Atomic orbital electron populations 1.21535 0.77582 1.04201 1.00920 1.44751 1.08126 1.06618 1.79477 1.16350 0.82495 0.84517 0.77826 1.90961 1.69190 1.32984 1.59739 1.44703 1.03834 1.09937 1.79703 1.20593 0.90541 0.84577 1.01009 1.21782 0.91884 0.95320 1.08135 1.21118 0.82649 0.91642 0.75676 1.90914 1.69220 1.34627 1.50643 1.48196 1.04858 1.08417 1.72106 1.22255 0.95612 0.84608 0.99691 1.22048 0.97922 0.98436 0.98647 1.21545 0.97321 0.93140 1.02802 1.21522 0.96378 1.00156 0.94060 0.91101 1.21813 1.00016 1.00898 0.97028 1.21082 0.91835 0.82781 0.98434 0.90830 1.21957 0.96707 0.92610 1.02040 1.20973 0.92301 0.87526 0.96969 1.42661 1.05147 1.03370 1.87884 1.19707 0.92461 0.85334 1.40370 0.90333 1.25759 0.95539 1.02636 1.03672 1.69893 1.01943 1.31627 1.59059 0.85010 0.77349 0.78903 0.77705 1.21080 1.22083 1.18957 0.93922 0.86288 0.93998 0.74464 0.74279 0.94294 0.93965 0.84386 0.84732 0.89810 0.86364 0.91375 0.87852 0.90758 0.90968 0.95664 0.91745 0.91916 0.93227 0.92311 0.96771 0.95925 0.80070 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 10.70 127.77 1.37 2.62 16 2 N -0.73 -9.46 5.72 -500.19 -2.86 -12.32 16 3 C 0.69 15.96 8.57 179.05 1.53 17.50 16 4 O -0.65 -23.88 16.34 -3.99 -0.07 -23.95 16 5 N -0.72 -11.45 5.56 -478.55 -2.66 -14.11 16 6 C 0.16 3.64 4.96 86.38 0.43 4.07 16 7 C -0.13 -1.77 4.17 29.85 0.12 -1.65 16 8 C 0.50 12.63 7.53 87.66 0.66 13.29 16 9 O -0.57 -22.45 11.53 -3.06 -0.04 -22.48 16 10 N -0.60 -12.31 2.41 -794.20 -1.91 -14.22 16 11 C 0.10 0.88 6.38 86.51 0.55 1.43 16 12 C -0.13 -1.11 5.75 30.82 0.18 -0.93 16 13 C -0.11 -1.50 5.43 30.62 0.17 -1.34 16 14 C -0.10 -2.32 2.25 -10.72 -0.02 -2.35 16 15 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 16 C -0.14 -3.51 8.19 71.98 0.59 -2.92 16 17 C 0.16 4.43 2.74 44.97 0.12 4.55 16 18 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 19 C -0.10 -3.82 2.76 30.60 0.08 -3.73 16 20 C 0.15 6.88 5.69 86.38 0.49 7.37 16 21 N -0.75 -44.17 5.60 -343.44 -1.92 -46.10 16 22 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 23 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 24 C -0.08 -5.31 5.50 84.86 0.47 -4.85 16 25 N -0.97 -65.99 13.06 21.65 0.28 -65.70 16 26 Si 0.98 49.63 29.55 68.60 2.03 51.65 16 27 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.42 1.53 8.84 -92.71 -0.82 0.71 16 34 H 0.42 2.10 8.49 -92.71 -0.79 1.31 16 35 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 37 H 0.14 0.77 7.71 -2.39 -0.02 0.76 16 38 H 0.13 0.88 7.92 -2.39 -0.02 0.86 16 39 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.12 0.23 5.93 -2.39 -0.01 0.21 16 41 H 0.07 0.67 6.33 -2.39 -0.02 0.65 16 42 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.02 0.83 6.15 -2.39 -0.01 0.82 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.40 5.97 -2.39 -0.01 1.38 16 48 H 0.05 2.20 5.52 -2.39 -0.01 2.19 16 49 H 0.06 2.76 6.24 -2.39 -0.01 2.75 16 50 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.02 1.02 6.63 -2.39 -0.02 1.00 16 52 H 0.37 23.85 7.67 -92.71 -0.71 23.14 16 53 H 0.25 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -98.41 405.73 -0.94 -99.36 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -1.38 Total: 29.23 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 7.58 Total: 18.65 kcal Atomic # 7 Polarization: -143.38 SS G_CDS: -9.07 Total: -152.45 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.10 Total: -46.43 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.65 kcal Total: -98.41 -0.94 -99.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707149062.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.376 kcal (2) G-P(sol) polarization free energy of solvation -98.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds