Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46922 * 2 1 4 4 C 1.52998 * 109.47247 * 119.99991 * 2 1 3 5 5 C 1.50694 * 109.47277 * 185.00237 * 4 2 1 6 6 O 1.21288 * 119.99900 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00162 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99981 * 179.97438 * 7 5 4 9 9 H 1.09003 * 108.45079 * 327.31673 * 8 7 5 10 10 C 1.47098 * 108.51316 * 85.00213 * 8 7 5 11 11 C 1.54860 * 110.32701 * 184.05218 * 10 8 7 12 12 N 1.44575 * 109.60154 * 288.73840 * 11 10 8 13 13 C 1.36942 * 118.63984 * 270.70504 * 12 11 10 14 14 H 1.07994 * 120.00454 * 30.44353 * 13 12 11 15 15 C 1.38811 * 119.99562 * 210.44794 * 13 12 11 16 16 N 1.31616 * 120.00560 * 10.90224 * 15 13 12 17 17 Si 1.86803 * 119.99680 * 190.91148 * 15 13 12 18 18 H 1.48498 * 109.47459 * 59.99270 * 17 15 13 19 19 H 1.48498 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46767 * 299.99200 * 17 15 13 21 21 C 1.47603 * 122.71641 * 90.72358 * 12 11 10 22 22 C 1.53949 * 112.14009 * 317.86929 * 21 12 11 23 23 C 1.52992 * 109.36748 * 79.62596 * 22 21 12 24 24 C 1.53002 * 109.36338 * 199.37155 * 22 21 12 25 25 C 1.50884 * 110.09708 * 319.43503 * 22 21 12 26 26 N 1.46501 * 109.47336 * 240.00644 * 2 1 3 27 27 C 1.34771 * 120.00491 * 84.99878 * 26 2 1 28 28 N 1.34777 * 120.00275 * 180.02562 * 27 26 2 29 29 O 1.21591 * 119.99809 * 359.97438 * 27 26 2 30 30 H 1.09004 * 109.47074 * 60.00321 * 1 2 3 31 31 H 1.09006 * 109.46478 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47419 * 299.99808 * 1 2 3 33 33 H 1.09001 * 109.46920 * 65.00117 * 4 2 1 34 34 H 1.09001 * 109.47154 * 305.00729 * 4 2 1 35 35 H 0.96995 * 119.99656 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.32812 * 304.32234 * 10 8 7 37 37 H 1.09005 * 109.32340 * 63.79361 * 10 8 7 38 38 H 1.09004 * 109.44615 * 48.77209 * 11 10 8 39 39 H 1.08994 * 109.44839 * 168.69134 * 11 10 8 40 40 H 0.96998 * 120.00479 * 179.97438 * 16 15 13 41 41 H 1.08993 * 108.94977 * 78.55032 * 21 12 11 42 42 H 1.08998 * 108.94779 * 197.27052 * 21 12 11 43 43 H 1.09007 * 109.47283 * 60.13435 * 23 22 21 44 44 H 1.09011 * 109.47038 * 180.12990 * 23 22 21 45 45 H 1.08997 * 109.47453 * 300.12935 * 23 22 21 46 46 H 1.09004 * 109.47537 * 60.00241 * 24 22 21 47 47 H 1.09009 * 109.46955 * 179.97438 * 24 22 21 48 48 H 1.08997 * 109.47095 * 299.99388 * 24 22 21 49 49 H 1.09008 * 109.48959 * 331.91930 * 25 22 21 50 50 H 1.09004 * 109.49004 * 211.85879 * 25 22 21 51 51 H 0.97007 * 119.99478 * 264.99613 * 26 2 1 52 52 H 0.96998 * 119.99628 * 359.97438 * 28 27 26 53 53 H 0.96997 * 119.99946 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0202 0.4445 7 7 4.2149 -1.1796 2.3348 8 6 5.6749 -1.0766 2.3962 9 1 6.0634 -1.0698 1.3778 10 6 6.0266 0.1991 3.0387 11 6 7.5623 0.3984 3.0341 12 7 8.1733 -0.5197 3.9690 13 6 8.3336 -0.1222 5.2696 14 1 7.6331 0.5699 5.7130 15 6 9.3966 -0.6088 6.0180 16 7 10.3659 -1.2759 5.4283 17 14 9.4512 -0.3172 7.8623 18 1 8.2560 -0.9297 8.4960 19 1 10.6797 -0.9334 8.4248 20 1 9.4611 1.1430 8.1324 21 6 8.6318 -1.8676 3.5795 22 6 7.6300 -2.5747 2.6488 23 6 7.8042 -2.0491 1.2226 24 6 7.8944 -4.0816 2.6700 25 6 6.2180 -2.3106 3.1104 26 7 2.0184 -0.6905 -1.1962 27 6 2.1472 -0.0181 -2.3571 28 7 2.5960 -0.6535 -3.4577 29 8 1.8575 1.1615 -2.4118 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7517 -1.7715 1.2055 34 1 1.6053 -0.2618 2.1370 35 1 3.7325 -1.6548 3.0293 36 1 5.5548 1.0183 2.4962 37 1 5.6663 0.1962 4.0674 38 1 7.9499 0.2085 2.0332 39 1 7.7963 1.4223 3.3253 40 1 11.1089 -1.6156 5.9512 41 1 9.5902 -1.7812 3.0675 42 1 8.7640 -2.4699 4.4782 43 1 8.8198 -2.2513 0.8823 44 1 7.0939 -2.5471 0.5624 45 1 7.6229 -0.9744 1.2067 46 1 7.7751 -4.4572 3.6863 47 1 7.1855 -4.5842 2.0118 48 1 8.9104 -4.2770 2.3272 49 1 6.2133 -2.1393 4.1869 50 1 5.5917 -3.1715 2.8762 51 1 2.2492 -1.6317 -1.1527 52 1 2.8267 -1.5946 -3.4142 53 1 2.6890 -0.1695 -4.2932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707281833.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -71.741869 kcal Electronic energy + Delta-G solvation = -31926.062448 eV Core-core repulsion = 27832.281980 eV Total energy + Delta-G solvation = -4093.780468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54448 -40.82686 -39.74374 -36.85053 -36.20048 -35.69202 -34.67719 -33.77391 -32.23629 -31.38348 -29.26760 -28.37246 -28.18308 -27.34619 -25.73138 -23.93899 -23.07638 -21.84457 -21.33355 -21.14415 -19.51716 -19.19023 -18.52291 -18.15061 -17.96698 -17.18997 -16.92816 -16.58122 -16.08665 -15.91218 -15.66158 -15.48361 -15.30749 -15.15395 -14.81880 -14.54237 -14.19596 -14.11839 -13.85332 -13.81218 -13.45292 -13.27838 -13.03458 -12.96233 -12.85653 -12.81099 -12.75445 -12.60392 -12.29313 -12.13166 -12.01138 -11.91324 -11.76928 -11.59988 -11.48972 -11.36100 -11.07815 -10.76101 -10.68135 -10.61464 -10.43341 -9.92673 -9.82513 -8.55993 -7.82142 -5.33740 1.47306 1.47774 1.54823 1.83070 2.06645 2.32354 2.35463 2.52287 3.31112 3.68896 3.70086 3.75037 3.80312 3.91536 4.07266 4.16638 4.24156 4.31193 4.44685 4.46405 4.53616 4.69819 4.74585 4.76148 4.77798 4.84403 4.85595 4.87206 4.91062 5.02569 5.06108 5.12351 5.15746 5.22269 5.29355 5.31642 5.37657 5.44520 5.54247 5.57750 5.67504 5.68696 5.71089 5.76770 5.90348 5.96346 6.10206 6.45305 6.77058 7.18977 7.22999 7.47643 7.76293 7.97847 8.38208 9.21496 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002721 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.214329 B =10286.584444 C =10846.508030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.051 0.949 4 C -0.138 4.138 5 C 0.501 3.499 6 O -0.578 6.578 7 N -0.718 5.718 8 C 0.149 3.851 9 H 0.086 0.914 10 C -0.133 4.133 11 C 0.150 3.850 12 N -0.598 5.598 13 C -0.265 4.265 14 H 0.059 0.941 15 C -0.043 4.043 16 N -0.933 5.933 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.281 1.281 21 C 0.207 3.793 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.089 4.089 26 N -0.718 5.718 27 C 0.701 3.299 28 N -0.853 5.853 29 O -0.652 6.652 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.028 0.972 40 H 0.248 0.752 41 H -0.012 1.012 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.052 0.948 50 H 0.086 0.914 51 H 0.407 0.593 52 H 0.411 0.589 53 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.905 -9.078 -10.999 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 H 0.069 0.931 4 C -0.178 4.178 5 C 0.289 3.711 6 O -0.457 6.457 7 N -0.369 5.369 8 C 0.045 3.955 9 H 0.104 0.896 10 C -0.175 4.175 11 C 0.022 3.978 12 N -0.320 5.320 13 C -0.396 4.396 14 H 0.077 0.923 15 C -0.238 4.238 16 N -0.579 5.579 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.221 1.221 20 H -0.207 1.207 21 C 0.083 3.917 22 C -0.086 4.086 23 C -0.201 4.201 24 C -0.183 4.183 25 C -0.127 4.127 26 N -0.373 5.373 27 C 0.398 3.602 28 N -0.422 5.422 29 O -0.534 6.534 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.246 0.754 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.006 0.994 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.242 0.758 52 H 0.242 0.758 53 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -19.597 -7.778 -11.426 23.981 hybrid contribution 1.016 -0.178 1.132 1.531 sum -18.581 -7.956 -10.294 22.683 Atomic orbital electron populations 1.22129 0.93194 1.03483 1.02426 1.20498 0.94319 0.96001 0.82517 0.93081 1.22082 0.89891 1.05778 1.00033 1.21277 0.91300 0.77734 0.80799 1.90753 1.71326 1.43278 1.40354 1.46296 1.07431 1.56536 1.26668 1.19978 0.79846 0.94353 1.01295 0.89626 1.21588 0.98471 0.97491 0.99914 1.20887 0.91404 0.92540 0.92944 1.43755 1.70531 1.11588 1.06132 1.19390 1.05837 1.25396 0.88970 0.92320 1.25821 0.94920 1.00882 1.02225 1.70185 1.10442 1.41924 1.35341 0.85429 0.76716 0.77718 0.81056 1.20104 1.22128 1.20684 1.20805 0.91525 0.84225 0.95181 1.20819 0.95847 0.96391 0.95560 1.22254 1.00869 1.01242 0.95729 1.21753 1.01540 0.93426 1.01579 1.21156 0.95152 0.96367 0.99997 1.44842 1.70635 1.13691 1.08175 1.16208 0.77707 0.84405 0.81841 1.42784 1.72478 1.15554 1.11339 1.90906 1.59961 1.16882 1.85678 0.94268 0.89980 0.89902 0.84538 0.84843 0.75370 0.93483 0.93232 0.93460 0.95340 0.94241 0.99426 0.94128 0.93802 0.91581 0.92350 0.93320 0.90534 0.93474 0.92927 0.89588 0.75782 0.75817 0.75096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.48 71.98 0.68 -1.36 16 2 C 0.17 3.13 2.13 44.99 0.10 3.23 16 3 H 0.05 1.42 7.39 -2.39 -0.02 1.40 16 4 C -0.14 -1.66 5.24 29.85 0.16 -1.50 16 5 C 0.50 11.16 7.53 87.65 0.66 11.82 16 6 O -0.58 -18.83 14.85 -3.05 -0.05 -18.88 16 7 N -0.72 -15.39 4.88 -452.05 -2.21 -17.60 16 8 C 0.15 4.44 1.79 43.01 0.08 4.52 16 9 H 0.09 2.81 3.95 -2.39 -0.01 2.81 16 10 C -0.13 -4.81 5.20 29.39 0.15 -4.66 16 11 C 0.15 6.47 5.58 87.37 0.49 6.95 16 12 N -0.60 -29.29 2.26 -698.40 -1.58 -30.87 16 13 C -0.27 -14.37 9.41 84.03 0.79 -13.58 16 14 H 0.06 3.15 7.85 -2.91 -0.02 3.13 16 15 C -0.04 -2.36 4.97 84.86 0.42 -1.94 16 16 N -0.93 -54.49 11.00 21.65 0.24 -54.26 16 17 Si 0.96 44.49 29.57 68.60 2.03 46.52 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 C 0.21 9.65 3.53 86.49 0.31 9.96 16 22 C -0.08 -2.85 0.75 -52.55 -0.04 -2.89 16 23 C -0.14 -4.60 6.76 71.98 0.49 -4.11 16 24 C -0.13 -3.59 8.15 71.98 0.59 -3.00 16 25 C -0.09 -2.64 4.38 29.76 0.13 -2.51 16 26 N -0.72 -12.96 4.22 -457.81 -1.93 -14.90 16 27 C 0.70 17.08 8.80 179.06 1.58 18.65 16 28 N -0.85 -12.84 8.88 -184.75 -1.64 -14.48 16 29 O -0.65 -22.91 16.84 -4.00 -0.07 -22.98 16 30 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.41 6.17 8.61 -92.71 -0.80 5.37 16 36 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 37 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.05 2.01 5.22 -2.39 -0.01 1.99 16 39 H 0.03 1.30 7.99 -2.39 -0.02 1.28 16 40 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 41 H -0.01 -0.66 7.83 -2.39 -0.02 -0.68 16 42 H 0.04 2.13 6.31 -2.39 -0.02 2.11 16 43 H 0.04 1.42 8.13 -2.38 -0.02 1.40 16 44 H 0.07 1.77 7.90 -2.38 -0.02 1.75 16 45 H 0.06 2.07 3.16 -2.39 -0.01 2.06 16 46 H 0.05 1.43 8.12 -2.38 -0.02 1.41 16 47 H 0.08 1.70 8.08 -2.38 -0.02 1.68 16 48 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.05 1.87 7.48 -2.38 -0.02 1.85 16 50 H 0.09 1.98 7.63 -2.38 -0.02 1.96 16 51 H 0.41 4.76 8.62 -92.70 -0.80 3.96 16 52 H 0.41 3.31 8.84 -92.71 -0.82 2.49 16 53 H 0.42 5.68 8.93 -92.71 -0.83 4.85 16 Total: -1.00 -80.59 402.83 -0.92 -81.51 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -2.29 Total: 26.36 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.57 Total: 19.56 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -7.12 Total: -132.10 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.11 Total: -41.85 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -80.59 -0.92 -81.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707281833.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.769 kcal (2) G-P(sol) polarization free energy of solvation -80.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds