Wall clock time and date at job start Sat Apr 11 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99893 * 2 1 4 4 C 1.52998 * 109.47282 * 293.96232 * 3 2 1 5 5 C 1.53007 * 109.46892 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.46813 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99885 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99844 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00084 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.46336 * 319.98083 * 9 7 6 11 11 C 1.53037 * 109.46381 * 79.94698 * 9 7 6 12 12 C 1.53119 * 109.27934 * 179.19224 * 11 9 7 13 13 C 1.53119 * 109.16543 * 302.34907 * 12 11 9 14 14 C 1.53032 * 109.27605 * 57.64953 * 13 12 11 15 15 N 1.46843 * 109.52908 * 300.82478 * 14 13 12 16 16 C 1.46899 * 111.00598 * 185.83976 * 15 14 13 17 17 C 1.46899 * 111.00532 * 123.96082 * 2 1 3 18 18 C 1.50698 * 109.46987 * 66.04197 * 17 2 1 19 19 O 1.21293 * 120.00006 * 0.02562 * 18 17 2 20 20 N 1.34777 * 119.99538 * 179.97438 * 18 17 2 21 21 C 1.37104 * 119.99773 * 179.72591 * 20 18 17 22 22 H 1.08002 * 119.99671 * 0.27660 * 21 20 18 23 23 C 1.38950 * 120.00030 * 180.27703 * 21 20 18 24 24 N 1.31414 * 119.99926 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99969 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47425 * 90.00231 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00087 * 25 23 21 28 28 H 1.48505 * 109.47256 * 330.00093 * 25 23 21 29 29 H 1.08998 * 109.46586 * 296.04046 * 1 2 3 30 30 H 1.08997 * 109.47601 * 56.04145 * 1 2 3 31 31 H 1.08998 * 109.46729 * 176.04253 * 1 2 3 32 32 H 1.09007 * 109.46705 * 53.96039 * 3 2 1 33 33 H 1.09000 * 109.47150 * 173.95706 * 3 2 1 34 34 H 1.09001 * 109.46824 * 299.99203 * 4 3 2 35 35 H 1.09000 * 109.47457 * 59.99662 * 4 3 2 36 36 H 1.09001 * 109.46656 * 299.99208 * 5 4 3 37 37 H 1.09000 * 109.47425 * 59.99545 * 5 4 3 38 38 H 0.97003 * 120.00115 * 359.97438 * 6 5 4 39 39 H 1.08996 * 109.50764 * 299.14291 * 11 9 7 40 40 H 1.09004 * 109.50276 * 59.25496 * 11 9 7 41 41 H 1.09006 * 109.52334 * 182.44025 * 12 11 9 42 42 H 1.09000 * 109.57175 * 62.28640 * 12 11 9 43 43 H 1.09004 * 109.49971 * 297.71625 * 13 12 11 44 44 H 1.08995 * 109.53659 * 177.61322 * 13 12 11 45 45 H 1.09002 * 109.46112 * 180.80394 * 14 13 12 46 46 H 1.09001 * 109.45523 * 60.83227 * 14 13 12 47 47 H 1.09002 * 109.46550 * 295.79262 * 16 15 14 48 48 H 1.09004 * 109.47001 * 55.78609 * 16 15 14 49 49 H 1.08998 * 109.47346 * 175.79173 * 16 15 14 50 50 H 1.09003 * 109.46477 * 306.04687 * 17 2 1 51 51 H 1.08993 * 109.47002 * 186.05013 * 17 2 1 52 52 H 0.97001 * 120.00485 * 0.02562 * 20 18 17 53 53 H 0.96999 * 119.99863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6313 2.0576 -1.3181 5 6 2.1802 3.4858 -1.3183 6 7 1.8320 4.1425 -2.5807 7 6 2.2136 5.4154 -2.8058 8 8 2.8456 6.0170 -1.9633 9 6 1.8550 6.0912 -4.1041 10 1 1.9669 5.3831 -4.9251 11 6 0.4047 6.5758 -4.0431 12 6 0.0511 7.2793 -5.3563 13 6 1.0247 8.4391 -5.5832 14 6 2.4570 7.9005 -5.5995 15 7 2.7467 7.2375 -4.3217 16 6 4.1560 6.8296 -4.2477 17 6 1.9956 -0.7661 1.1374 18 6 1.6371 -2.2205 0.9726 19 8 1.0054 -2.5832 0.0027 20 7 2.0192 -3.1182 1.9024 21 6 1.6881 -4.4406 1.7553 22 1 1.1251 -4.7634 0.8921 23 6 2.0771 -5.3652 2.7168 24 7 2.7618 -4.9722 3.7673 25 14 1.6267 -7.1669 2.5160 26 1 2.7019 -7.8655 1.7670 27 1 1.4707 -7.7903 3.8547 28 1 0.3493 -7.2773 1.7666 29 1 -0.3632 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5611 1.9273 0.8311 33 1 3.0798 1.3445 0.1082 34 1 2.0657 1.5018 -2.1491 35 1 0.5470 2.0846 -1.4263 36 1 1.7462 4.0418 -0.4873 37 1 3.2645 3.4584 -1.2103 38 1 1.3269 3.6612 -3.2546 39 1 -0.2582 5.7229 -3.8972 40 1 0.2887 7.2736 -3.2138 41 1 -0.9673 7.6642 -5.3007 42 1 0.1285 6.5719 -6.1820 43 1 0.9185 9.1662 -4.7781 44 1 0.8051 8.9180 -6.5374 45 1 3.1537 8.7258 -5.7466 46 1 2.5661 7.1837 -6.4134 47 1 4.3578 6.0798 -5.0126 48 1 4.7945 7.6976 -4.4124 49 1 4.3613 6.4090 -3.2633 50 1 1.5612 -0.3874 2.0627 51 1 3.0798 -0.6611 1.1754 52 1 2.5246 -2.8282 2.6778 53 1 3.0336 -5.6178 4.4383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707385315.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:40 Heat of formation + Delta-G solvation = -92.706761 kcal Electronic energy + Delta-G solvation = -29238.456637 eV Core-core repulsion = 25143.767062 eV Total energy + Delta-G solvation = -4094.689574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41338 -40.37433 -39.11278 -38.20392 -36.27844 -35.78190 -34.43122 -33.29069 -33.01068 -31.74022 -29.36080 -28.04039 -27.44512 -26.57290 -25.02452 -23.97864 -23.47264 -22.11412 -21.32486 -20.96618 -20.60452 -19.84143 -18.24182 -17.86247 -17.32442 -16.98256 -16.57776 -16.56111 -16.40438 -16.05583 -15.86519 -15.69891 -15.48082 -15.25797 -15.11269 -14.96660 -14.81193 -14.24283 -13.97230 -13.83037 -13.72038 -13.47330 -13.41548 -13.04806 -12.99351 -12.81299 -12.71031 -12.69569 -12.50595 -12.39617 -12.35449 -12.30200 -12.11378 -11.87428 -11.64093 -11.61550 -11.44594 -11.34215 -10.63958 -10.26625 -10.09924 -9.98796 -9.31070 -9.18911 -8.45340 -5.93979 1.38716 1.42304 1.54917 1.56702 2.01343 2.07143 2.29767 2.79544 2.94527 3.21598 3.44109 3.63522 3.80514 3.96332 3.97717 4.02347 4.07270 4.15075 4.15683 4.28662 4.34327 4.41364 4.44411 4.49325 4.49870 4.55751 4.57779 4.61374 4.64854 4.75514 4.75990 4.80749 4.81363 4.96485 5.02597 5.03899 5.10501 5.18338 5.20052 5.24375 5.30125 5.42313 5.43936 5.45424 5.89590 5.92648 6.08390 6.09384 6.23876 6.55271 6.62283 7.14466 7.23754 7.58260 8.14116 8.72081 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.033154 B = 0.001449 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.350461 B =19319.311282 C =19652.707064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.057 3.943 4 C -0.113 4.113 5 C 0.129 3.871 6 N -0.718 5.718 7 C 0.513 3.487 8 O -0.565 6.565 9 C 0.072 3.928 10 H 0.078 0.922 11 C -0.105 4.105 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.055 3.945 15 N -0.541 5.541 16 C 0.018 3.982 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.576 5.576 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.414 0.586 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.042 0.958 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.109 0.891 52 H 0.395 0.605 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 26.456 -17.193 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.151 4.151 5 C 0.005 3.995 6 N -0.371 5.371 7 C 0.299 3.701 8 O -0.443 6.443 9 C -0.039 4.039 10 H 0.096 0.904 11 C -0.143 4.143 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.072 4.072 15 N -0.267 5.267 16 C -0.130 4.130 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.197 1.197 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.127 0.873 52 H 0.229 0.771 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.423 26.640 -17.118 31.758 hybrid contribution 0.032 -1.352 0.603 1.481 sum -2.391 25.288 -16.514 30.297 Atomic orbital electron populations 1.22479 0.86884 1.02463 1.00550 1.61513 1.08894 1.13501 1.42216 1.22084 1.00825 0.86830 0.97315 1.21624 1.02174 0.93092 0.98201 1.21169 1.00067 0.92371 0.85910 1.45946 1.57535 1.13281 1.20318 1.20894 0.78477 0.81494 0.89220 1.90674 1.40668 1.65134 1.47809 1.21655 0.95825 0.92590 0.93860 0.90398 1.21569 0.91740 1.01396 0.99621 1.21582 0.99891 0.97644 0.96291 1.21632 0.93175 0.98126 1.02703 1.22223 0.98406 0.98393 0.88214 1.61639 1.03646 1.26573 1.34854 1.22490 0.88458 1.00588 1.01417 1.21750 1.02082 0.90246 0.93387 1.20782 0.83662 0.88761 0.83908 1.90453 1.45137 1.81454 1.32913 1.41949 1.50016 1.07112 1.22245 1.19670 1.34377 0.84168 1.08002 0.90252 1.26030 0.96310 1.04302 0.94649 1.69677 1.38260 1.37153 1.11157 0.84926 0.78640 0.76935 0.77826 1.19703 1.19628 1.19733 0.95621 0.89528 0.92745 0.93721 0.89923 0.90469 0.90224 0.92017 0.92130 0.74913 0.89351 0.92312 0.90159 0.90767 0.92120 0.89507 0.89972 0.93961 0.95249 0.90525 0.91888 0.91635 0.87342 0.77088 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.01 127.69 1.15 1.88 16 2 N -0.54 -16.54 4.50 -927.04 -4.17 -20.71 16 3 C 0.06 1.25 4.96 86.30 0.43 1.68 16 4 C -0.11 -1.93 5.26 30.60 0.16 -1.77 16 5 C 0.13 2.21 5.67 86.38 0.49 2.70 16 6 N -0.72 -10.82 5.56 -463.05 -2.57 -13.39 16 7 C 0.51 10.10 6.27 87.66 0.55 10.65 16 8 O -0.56 -16.11 14.52 -3.04 -0.04 -16.15 16 9 C 0.07 1.06 2.24 44.19 0.10 1.15 16 10 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 11 C -0.11 -1.20 5.36 30.65 0.16 -1.04 16 12 C -0.12 -0.92 6.00 30.67 0.18 -0.74 16 13 C -0.12 -1.07 6.09 30.64 0.19 -0.89 16 14 C 0.05 0.62 5.46 86.32 0.47 1.09 16 15 N -0.54 -9.13 4.51 -901.62 -4.07 -13.20 16 16 C 0.02 0.32 9.10 127.69 1.16 1.48 16 17 C 0.06 1.94 5.45 85.56 0.47 2.41 16 18 C 0.44 20.94 7.51 87.66 0.66 21.60 16 19 O -0.61 -33.50 13.89 -3.07 -0.04 -33.54 16 20 N -0.58 -29.60 5.29 -306.98 -1.62 -31.22 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 24 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 25 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 2.10 6.30 -2.39 -0.02 2.09 16 31 H 0.05 2.13 5.88 -2.39 -0.01 2.12 16 32 H 0.04 0.90 8.12 -2.38 -0.02 0.88 16 33 H 0.08 1.70 7.93 -2.39 -0.02 1.68 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.25 6.47 -2.39 -0.02 1.24 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 3.95 8.47 -92.71 -0.79 3.16 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 44 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 46 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.08 1.16 8.09 -2.39 -0.02 1.15 16 49 H 0.06 1.45 5.62 -2.39 -0.01 1.43 16 50 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 51 H 0.11 3.29 7.93 -2.39 -0.02 3.27 16 52 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 53 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -73.56 415.99 -3.37 -76.93 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -0.61 Total: 34.02 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 7.45 Total: 21.88 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -12.15 Total: -128.09 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -73.56 -3.37 -76.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707385315.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.780 kcal (2) G-P(sol) polarization free energy of solvation -73.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds