Wall clock time and date at job start Sat Apr 11 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.49872 * 2 1 4 4 C 1.53048 * 109.49865 * 239.93289 * 2 1 3 5 5 C 1.53035 * 109.53688 * 178.68549 * 4 2 1 6 6 C 1.53191 * 109.31594 * 61.36385 * 5 4 2 7 7 N 1.46925 * 108.77842 * 305.36516 * 6 5 4 8 8 C 1.34770 * 120.63364 * 233.58403 * 7 6 5 9 9 O 1.21279 * 120.00624 * 174.37731 * 8 7 6 10 10 C 1.50705 * 119.99832 * 354.38167 * 8 7 6 11 11 C 1.53002 * 109.47107 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46951 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.46951 * 179.97438 * 12 11 10 14 14 N 1.46500 * 109.47055 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99803 * 179.97438 * 14 13 12 16 16 N 1.34778 * 119.99967 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00146 * 0.02562 * 15 14 13 18 18 C 1.46928 * 118.73398 * 53.60571 * 7 6 5 19 19 H 1.08990 * 109.59078 * 66.18300 * 18 7 6 20 20 C 1.53009 * 109.58261 * 186.60667 * 18 7 6 21 21 N 1.46499 * 109.46966 * 292.73696 * 20 18 7 22 22 C 1.36937 * 120.00062 * 185.80674 * 21 20 18 23 23 H 1.08002 * 119.99699 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00127 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00184 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47194 * 60.00163 * 26 24 22 28 28 H 1.48494 * 109.47233 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47037 * 300.00362 * 26 24 22 30 30 H 1.09002 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46942 * 60.06913 * 1 2 3 32 32 H 1.08995 * 109.47175 * 300.06468 * 1 2 3 33 33 H 1.08997 * 109.45875 * 298.70136 * 4 2 1 34 34 H 1.08995 * 109.45778 * 58.68062 * 4 2 1 35 35 H 1.09005 * 109.49771 * 181.31469 * 5 4 2 36 36 H 1.08997 * 109.49910 * 301.38361 * 5 4 2 37 37 H 1.09005 * 109.58388 * 65.15205 * 6 5 4 38 38 H 1.09006 * 109.58994 * 185.57500 * 6 5 4 39 39 H 1.09002 * 109.46892 * 299.99741 * 10 8 7 40 40 H 1.09001 * 109.47043 * 59.99526 * 10 8 7 41 41 H 1.08995 * 109.46997 * 300.00059 * 11 10 8 42 42 H 1.09006 * 109.46926 * 60.00077 * 11 10 8 43 43 H 1.09002 * 109.47201 * 300.00060 * 12 11 10 44 44 H 1.09001 * 109.46889 * 59.99940 * 12 11 10 45 45 H 1.09002 * 109.47217 * 300.00050 * 13 12 11 46 46 H 1.08998 * 109.46649 * 60.00155 * 13 12 11 47 47 H 0.96996 * 119.99561 * 0.02562 * 14 13 12 48 48 H 0.97004 * 119.99707 * 0.02562 * 16 15 14 49 49 H 0.96998 * 119.99949 * 180.02562 * 16 15 14 50 50 H 1.09002 * 109.46970 * 52.73646 * 20 18 7 51 51 H 1.08997 * 109.47013 * 172.73429 * 20 18 7 52 52 H 0.96995 * 119.99996 * 5.80072 * 21 20 18 53 53 H 0.96995 * 120.00295 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2486 5 6 3.5708 -0.6948 -1.2661 6 6 4.1052 -1.4267 -0.0311 7 7 3.5046 -0.8295 1.1694 8 6 4.2810 -0.3871 2.1782 9 8 3.7815 0.1955 3.1174 10 6 5.7700 -0.6162 2.1393 11 6 6.4108 -0.0197 3.3942 12 6 7.9224 -0.2529 3.3549 13 6 8.5633 0.3441 4.6094 14 7 10.0108 0.1214 4.5716 15 6 10.7874 0.5652 5.5797 16 7 12.1190 0.3598 5.5451 17 8 10.2867 1.1500 6.5208 18 6 2.0413 -0.7242 1.2494 19 1 1.6052 -1.7219 1.2976 20 6 1.6517 0.0698 2.4979 21 7 2.0024 -0.6989 3.6947 22 6 1.6394 -0.2413 4.9332 23 1 1.0949 0.6866 5.0277 24 6 1.9713 -0.9699 6.0671 25 7 2.6353 -2.1004 5.9519 26 14 1.4768 -0.3452 7.7567 27 1 -0.0018 -0.2258 7.8270 28 1 1.9468 -1.2982 8.7939 29 1 2.0926 0.9854 7.9922 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5128 -0.8906 32 1 -0.3633 0.5148 0.8894 33 1 1.6967 -1.7570 -1.2357 34 1 1.6584 -0.2238 -2.1389 35 1 3.9334 -1.1893 -2.1674 36 1 3.9159 0.3391 -1.2545 37 1 3.8375 -2.4819 -0.0874 38 1 5.1896 -1.3247 0.0135 39 1 5.9720 -1.6866 2.1015 40 1 6.1885 -0.1360 1.2547 41 1 6.2087 1.0507 3.4315 42 1 5.9923 -0.4996 4.2789 43 1 8.1241 -1.3235 3.3177 44 1 8.3411 0.2266 2.4701 45 1 8.3616 1.4147 4.6462 46 1 8.1446 -0.1351 5.4944 47 1 10.4102 -0.3448 3.8206 48 1 12.5184 -0.1070 4.7945 49 1 12.6779 0.6789 6.2708 50 1 2.1868 1.0194 2.5062 51 1 0.5781 0.2579 2.4886 52 1 2.4917 -1.5321 3.6097 53 1 2.8676 -2.6094 6.7443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715484519.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:30 Heat of formation + Delta-G solvation = -67.310256 kcal Electronic energy + Delta-G solvation = -31178.662863 eV Core-core repulsion = 27085.074563 eV Total energy + Delta-G solvation = -4093.588299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47458 -40.84531 -38.58591 -37.09637 -36.35235 -34.97932 -34.70162 -34.01301 -33.52156 -31.90930 -30.21431 -28.31298 -27.01119 -25.95985 -24.90581 -23.79127 -22.50031 -22.25145 -21.88946 -21.08687 -19.80112 -19.22997 -19.01492 -18.20124 -17.46515 -17.08880 -16.81065 -16.62241 -16.34611 -15.79476 -15.74653 -15.48569 -15.34397 -15.29541 -15.00147 -14.77102 -14.65115 -14.08797 -14.03358 -13.69851 -13.55572 -13.31907 -13.17504 -12.94870 -12.85984 -12.76444 -12.60419 -12.40194 -12.38302 -12.14446 -12.02654 -11.88454 -11.81912 -11.58397 -11.54518 -11.52924 -11.41662 -11.05390 -10.82808 -10.77621 -10.00482 -9.70085 -9.34569 -8.53772 -7.83382 -4.99856 1.40803 1.45800 1.50321 1.92004 2.13943 2.14707 2.31564 2.61216 3.49916 3.62561 3.73829 3.79873 3.85003 3.94664 4.02080 4.05458 4.19865 4.32449 4.35869 4.39030 4.42462 4.46686 4.58766 4.62010 4.69365 4.76236 4.83415 4.85847 4.91218 4.92615 4.93450 4.99670 5.03121 5.11426 5.17398 5.29333 5.31631 5.34309 5.37994 5.42648 5.43172 5.51695 5.52038 5.60177 5.90623 5.95306 6.01727 6.37980 6.83097 7.12559 7.44719 7.64555 7.75898 8.25792 8.48710 9.40962 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.003475 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.818766 B = 8055.693603 C =11211.724883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.103 3.897 7 N -0.619 5.619 8 C 0.457 3.543 9 O -0.509 6.509 10 C -0.117 4.117 11 C -0.096 4.096 12 C -0.105 4.105 13 C 0.137 3.863 14 N -0.727 5.727 15 C 0.693 3.307 16 N -0.844 5.844 17 O -0.656 6.656 18 C 0.153 3.847 19 H 0.053 0.947 20 C 0.168 3.832 21 N -0.698 5.698 22 C -0.210 4.210 23 H 0.057 0.943 24 C -0.079 4.079 25 N -0.969 5.969 26 Si 0.959 3.041 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.292 1.292 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.048 0.952 42 H 0.027 0.973 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.049 0.951 46 H 0.035 0.965 47 H 0.417 0.583 48 H 0.416 0.584 49 H 0.420 0.580 50 H 0.014 0.986 51 H 0.012 0.988 52 H 0.368 0.632 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.474 -0.309 -22.298 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.166 4.166 6 C -0.018 4.018 7 N -0.356 5.356 8 C 0.244 3.756 9 O -0.381 6.381 10 C -0.157 4.157 11 C -0.135 4.135 12 C -0.142 4.142 13 C 0.012 3.988 14 N -0.384 5.384 15 C 0.390 3.610 16 N -0.414 5.414 17 O -0.538 6.538 18 C 0.049 3.951 19 H 0.071 0.929 20 C 0.041 3.959 21 N -0.339 5.339 22 C -0.343 4.343 23 H 0.075 0.925 24 C -0.270 4.270 25 N -0.622 5.622 26 Si 0.790 3.210 27 H -0.203 1.203 28 H -0.221 1.221 29 H -0.219 1.219 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.140 0.860 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.255 0.745 48 H 0.248 0.752 49 H 0.253 0.747 50 H 0.032 0.968 51 H 0.030 0.970 52 H 0.199 0.801 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.565 0.598 -20.968 25.537 hybrid contribution 0.149 -0.196 1.498 1.518 sum 14.714 0.402 -19.471 24.409 Atomic orbital electron populations 1.21828 0.94169 1.02207 1.02030 1.21407 0.96283 0.99255 0.94096 0.91923 1.21564 0.96004 1.00698 0.96347 1.21906 0.95442 1.01279 0.97928 1.21955 0.99442 0.97087 0.83339 1.48073 1.05303 1.62866 1.19368 1.21447 0.90667 0.81560 0.81914 1.91139 1.73691 1.39280 1.34024 1.21583 0.90270 1.03681 1.00187 1.21089 0.94881 1.00408 0.97137 1.21622 0.93199 1.02543 0.96874 1.21095 0.78750 1.00020 0.98936 1.44848 1.07222 1.62450 1.23908 1.16344 0.82950 0.79199 0.82494 1.42724 1.04814 1.64628 1.29201 1.90968 1.74877 1.50291 1.37680 1.21294 0.80871 0.98034 0.94928 0.92905 1.20884 0.94676 0.94707 0.85594 1.42289 1.65876 1.24629 1.01079 1.19394 1.25953 1.03001 0.85935 0.92517 1.25238 1.03086 0.98344 1.00345 1.69779 1.47556 1.16972 1.27937 0.85402 0.77911 0.76699 0.81003 1.20347 1.22115 1.21903 0.92420 0.90389 0.93971 0.91557 0.89915 0.87960 0.91883 0.91462 0.87585 0.88135 0.85992 0.93274 0.95360 0.89450 0.87894 0.93271 0.94694 0.74541 0.75232 0.74750 0.96834 0.97018 0.80055 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.97 71.98 0.65 -2.74 16 2 C -0.09 -2.25 2.34 -10.71 -0.03 -2.27 16 3 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.11 -1.84 5.17 30.62 0.16 -1.68 16 5 C -0.13 -1.81 6.08 30.67 0.19 -1.63 16 6 C 0.10 1.90 6.32 86.36 0.55 2.45 16 7 N -0.62 -18.72 2.97 -795.01 -2.36 -21.08 16 8 C 0.46 16.70 6.97 87.66 0.61 17.31 16 9 O -0.51 -25.28 9.65 -3.03 -0.03 -25.31 16 10 C -0.12 -2.97 4.11 29.85 0.12 -2.84 16 11 C -0.10 -2.89 4.50 30.60 0.14 -2.75 16 12 C -0.10 -2.02 5.33 30.60 0.16 -1.86 16 13 C 0.14 3.52 5.67 86.38 0.49 4.01 16 14 N -0.73 -13.86 5.56 -478.52 -2.66 -16.52 16 15 C 0.69 16.86 8.84 179.05 1.58 18.44 16 16 N -0.84 -10.61 8.88 -184.74 -1.64 -12.25 16 17 O -0.66 -24.53 17.18 -4.01 -0.07 -24.60 16 18 C 0.15 5.19 2.41 44.98 0.11 5.29 16 19 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 20 C 0.17 7.66 4.77 86.38 0.41 8.07 16 21 N -0.70 -39.34 3.15 -343.44 -1.08 -40.43 16 22 C -0.21 -13.15 9.69 84.03 0.81 -12.34 16 23 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 24 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 25 N -0.97 -64.10 13.06 21.65 0.28 -63.81 16 26 Si 0.96 51.67 29.55 68.60 2.03 53.69 16 27 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.29 -15.80 7.11 99.48 0.71 -15.09 16 29 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.17 6.48 -2.39 -0.02 1.15 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.11 1.39 5.96 -2.38 -0.01 1.38 16 39 H 0.10 2.21 8.12 -2.39 -0.02 2.19 16 40 H 0.12 2.01 7.46 -2.39 -0.02 1.99 16 41 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 42 H 0.03 1.14 8.10 -2.38 -0.02 1.12 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.42 4.06 8.49 -92.71 -0.79 3.27 16 48 H 0.42 1.75 8.84 -92.71 -0.82 0.93 16 49 H 0.42 4.70 8.93 -92.71 -0.83 3.88 16 50 H 0.01 0.70 6.49 -2.39 -0.02 0.68 16 51 H 0.01 0.56 6.33 -2.39 -0.02 0.54 16 52 H 0.37 21.97 6.83 -92.71 -0.63 21.34 16 53 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -94.52 410.12 -1.24 -95.77 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -2.13 Total: 31.62 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.42 Total: 22.92 kcal Atomic # 7 Polarization: -146.63 SS G_CDS: -7.46 Total: -154.09 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.10 Total: -49.91 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.03 Total: 53.69 kcal Total: -94.52 -1.24 -95.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715484519.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.459 kcal (2) G-P(sol) polarization free energy of solvation -94.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds