Wall clock time and date at job start Sat Apr 11 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46813 * 2 1 4 4 N 1.46891 * 109.47067 * 240.00367 * 2 1 3 5 5 C 1.46896 * 111.00541 * 84.99535 * 4 2 1 6 6 C 1.50695 * 109.47564 * 179.97438 * 5 4 2 7 7 O 1.21291 * 119.99882 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00025 * 180.02562 * 6 5 4 9 9 C 1.37105 * 119.99767 * 180.02562 * 8 6 5 10 10 H 1.08002 * 119.99723 * 0.02562 * 9 8 6 11 11 C 1.38940 * 119.99457 * 180.02562 * 9 8 6 12 12 N 1.31414 * 120.00777 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99644 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47376 * 179.97438 * 13 11 9 15 15 H 1.48505 * 109.47091 * 60.00519 * 13 11 9 16 16 H 1.48497 * 109.47408 * 300.00404 * 13 11 9 17 17 C 1.52997 * 109.47095 * 120.00036 * 2 1 3 18 18 H 1.09000 * 110.88911 * 60.72763 * 17 2 1 19 19 C 1.55156 * 111.00331 * 296.84406 * 17 2 1 20 20 C 1.54326 * 102.94330 * 206.42472 * 19 17 2 21 21 N 1.47020 * 107.26883 * 22.19457 * 20 19 17 22 22 C 1.34778 * 125.65058 * 181.01325 * 21 20 19 23 23 O 1.21280 * 120.00428 * 180.02562 * 22 21 20 24 24 C 1.50700 * 119.99728 * 0.02562 * 22 21 20 25 25 C 1.52999 * 109.47096 * 179.97438 * 24 22 21 26 26 N 1.46901 * 109.47064 * 180.02562 * 25 24 22 27 27 C 1.46903 * 111.00153 * 66.05009 * 26 25 24 28 28 C 1.46904 * 110.99832 * 190.00178 * 26 25 24 29 29 C 1.47422 * 108.70686 * 1.05896 * 21 20 19 30 30 H 1.08992 * 109.47228 * 65.07717 * 1 2 3 31 31 H 1.09005 * 109.47026 * 185.07628 * 1 2 3 32 32 H 1.09000 * 109.47380 * 305.07076 * 1 2 3 33 33 H 1.00900 * 110.99776 * 321.04069 * 4 2 1 34 34 H 1.09006 * 109.46902 * 59.99555 * 5 4 2 35 35 H 1.08999 * 109.47215 * 300.00104 * 5 4 2 36 36 H 0.96999 * 119.99698 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.98949 * 0.02562 * 12 11 9 38 38 H 1.08994 * 110.72443 * 324.78934 * 19 17 2 39 39 H 1.09000 * 110.72249 * 87.88930 * 19 17 2 40 40 H 1.09002 * 109.88533 * 141.61400 * 20 19 17 41 41 H 1.09002 * 109.88691 * 262.77970 * 20 19 17 42 42 H 1.08997 * 109.47441 * 300.00175 * 24 22 21 43 43 H 1.09011 * 109.46955 * 60.00330 * 24 22 21 44 44 H 1.08993 * 109.47703 * 300.00184 * 25 24 22 45 45 H 1.08999 * 109.47029 * 60.00252 * 25 24 22 46 46 H 1.08999 * 109.46955 * 59.99593 * 27 26 25 47 47 H 1.08995 * 109.47298 * 179.97438 * 27 26 25 48 48 H 1.08996 * 109.47002 * 300.00054 * 27 26 25 49 49 H 1.09003 * 109.47175 * 60.00361 * 28 26 25 50 50 H 1.09007 * 109.46793 * 179.97438 * 28 26 25 51 51 H 1.08999 * 109.47244 * 299.99919 * 28 26 25 52 52 H 1.08997 * 110.37069 * 217.03662 * 29 21 20 53 53 H 1.08997 * 110.36651 * 94.70483 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5214 -3.5557 7 8 2.8688 -1.6983 -3.4699 8 7 2.7295 0.1210 -4.7322 9 6 3.1894 -0.5561 -5.8321 10 1 3.4382 -1.6043 -5.7559 11 6 3.3353 0.1063 -7.0447 12 7 3.0330 1.3818 -7.1373 13 14 3.9626 -0.8160 -8.5432 14 1 4.0265 0.1091 -9.7030 15 1 3.0408 -1.9377 -8.8557 16 1 5.3182 -1.3530 -8.2623 17 6 2.0400 -0.7212 1.2492 18 1 1.7001 -1.7568 1.2661 19 6 1.6087 0.0268 2.5383 20 6 2.7004 -0.3747 3.5526 21 7 3.8812 -0.7898 2.7814 22 6 5.0434 -1.2321 3.3014 23 8 5.9551 -1.5484 2.5668 24 6 5.2099 -1.3335 4.7957 25 6 6.6102 -1.8589 5.1183 26 7 6.7724 -1.9584 6.5749 27 6 5.8781 -2.9801 7.1357 28 6 8.1713 -2.2303 6.9315 29 6 3.5842 -0.6412 1.3451 30 1 -0.3633 0.4330 -0.9319 31 1 -0.3633 -1.0237 0.0909 32 1 -0.3634 0.5905 0.8411 33 1 1.4496 -1.4978 -1.4100 34 1 2.7588 1.0463 -2.1182 35 1 1.0870 0.6163 -2.5525 36 1 2.5056 1.0623 -4.8006 37 1 2.7083 1.8609 -6.3589 38 1 1.6097 1.1048 2.3773 39 1 0.6271 -0.3112 2.8702 40 1 2.9510 0.4775 4.1843 41 1 2.3488 -1.2035 4.1670 42 1 5.0790 -0.3485 5.2436 43 1 4.4636 -2.0182 5.1989 44 1 6.7408 -2.8440 4.6705 45 1 7.3568 -1.1747 4.7151 46 1 6.1088 -3.9483 6.6913 47 1 6.0188 -3.0333 8.2152 48 1 4.8433 -2.7171 6.9164 49 1 8.8036 -1.4221 6.5639 50 1 8.2632 -2.2986 8.0156 51 1 8.4851 -3.1714 6.4799 52 1 4.0419 -1.4511 0.7772 53 1 3.9371 0.3242 0.9826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716969364.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:56 Heat of formation + Delta-G solvation = -95.932325 kcal Electronic energy + Delta-G solvation = -29605.926706 eV Core-core repulsion = 25511.097261 eV Total energy + Delta-G solvation = -4094.829445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26427 -40.38784 -39.33719 -38.23882 -37.14171 -36.27435 -33.53664 -33.08100 -32.26693 -30.64626 -29.66764 -28.50132 -27.79857 -26.41498 -25.74804 -24.21670 -23.06883 -22.08219 -21.66821 -21.08541 -20.07572 -19.98038 -18.36968 -18.18532 -17.33090 -17.06009 -16.78457 -16.51906 -16.39374 -16.04657 -15.71110 -15.64722 -15.48594 -15.30452 -15.01551 -14.64147 -14.48039 -14.31076 -14.15289 -13.71876 -13.57707 -13.35833 -13.30296 -13.28840 -13.15805 -12.84048 -12.79438 -12.67602 -12.64011 -12.46383 -12.22652 -11.96252 -11.93351 -11.91713 -11.89838 -11.85409 -11.54612 -11.50856 -10.96536 -10.42566 -10.12544 -9.67669 -9.42276 -9.31621 -8.94597 -6.08301 1.50837 1.52718 1.56814 1.80998 1.92794 1.99487 2.38855 2.77981 2.96281 3.14923 3.32080 3.60144 3.64894 3.76043 3.85171 3.93794 4.09065 4.10561 4.26078 4.30958 4.33044 4.36204 4.37659 4.40103 4.46052 4.50946 4.51343 4.60386 4.63186 4.67781 4.75106 4.84732 4.87901 4.91533 4.93761 4.98224 5.00152 5.02269 5.04839 5.17013 5.24598 5.31965 5.42252 5.58285 5.93230 5.93610 6.01921 6.03897 6.37882 6.52052 6.56915 6.73314 7.11061 7.42754 7.91710 8.53250 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.001890 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.976489 B =14811.232841 C =16299.158319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.086 0.914 4 N -0.683 5.683 5 C 0.069 3.931 6 C 0.440 3.560 7 O -0.620 6.620 8 N -0.587 5.587 9 C -0.412 4.412 10 H 0.071 0.929 11 C -0.042 4.042 12 N -0.915 5.915 13 Si 1.133 2.867 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.276 1.276 17 C -0.077 4.077 18 H 0.079 0.921 19 C -0.115 4.115 20 C 0.094 3.906 21 N -0.621 5.621 22 C 0.516 3.484 23 O -0.599 6.599 24 C -0.115 4.115 25 C 0.072 3.928 26 N -0.552 5.552 27 C 0.016 3.984 28 C 0.022 3.978 29 C 0.120 3.880 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.344 0.656 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.385 0.615 37 H 0.259 0.741 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.022 0.978 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.021 0.979 52 H 0.039 0.961 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 0.388 32.191 32.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.105 0.895 4 N -0.315 5.315 5 C -0.063 4.063 6 C 0.228 3.772 7 O -0.505 6.505 8 N -0.226 5.226 9 C -0.541 4.541 10 H 0.089 0.911 11 C -0.240 4.240 12 N -0.555 5.555 13 Si 0.953 3.047 14 H -0.195 1.195 15 H -0.197 1.197 16 H -0.201 1.201 17 C -0.097 4.097 18 H 0.097 0.903 19 C -0.153 4.153 20 C -0.027 4.027 21 N -0.354 5.354 22 C 0.306 3.694 23 O -0.480 6.480 24 C -0.155 4.155 25 C -0.057 4.057 26 N -0.276 5.276 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.003 4.003 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.219 0.781 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.040 0.960 52 H 0.058 0.942 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.347 0.114 30.670 30.852 hybrid contribution -0.735 -0.576 0.383 1.009 sum -4.082 -0.462 31.053 31.323 Atomic orbital electron populations 1.22439 0.94943 1.02958 1.03045 1.21630 0.94076 0.97605 0.88119 0.89541 1.60141 1.58962 1.09226 1.03135 1.21521 1.01024 0.95243 0.88548 1.20991 0.83150 0.88062 0.85039 1.90504 1.56162 1.18521 1.85334 1.41995 1.59588 1.11986 1.09059 1.20513 1.45730 0.97228 0.90619 0.91115 1.27811 0.96228 0.96784 1.03192 1.70974 1.42784 1.08942 1.32752 0.82641 0.76609 0.74031 0.71446 1.19511 1.19710 1.20143 1.22227 0.92143 1.00572 0.94730 0.90261 1.22749 0.99110 1.01509 0.91976 1.22387 0.84059 1.01362 0.94884 1.48730 1.14277 1.64244 1.08190 1.21064 0.80497 0.75766 0.92071 1.90722 1.41758 1.51810 1.63746 1.21537 0.98962 1.05913 0.89044 1.21729 0.96723 0.99477 0.87749 1.62035 1.07400 1.47993 1.10137 1.22567 0.97818 0.91998 1.00839 1.22442 0.88113 0.99784 1.02293 1.22017 0.96841 1.00248 0.81177 0.93271 0.92197 0.89080 0.83702 0.88161 0.91156 0.78097 0.92980 0.89102 0.87055 0.88945 0.89241 0.85998 0.86617 0.95998 0.91636 0.96169 0.89855 0.89916 0.91374 0.89531 0.96042 0.94249 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.91 71.98 0.64 -1.97 16 2 C 0.10 1.88 2.10 44.92 0.09 1.98 16 3 H 0.09 1.61 7.79 -2.39 -0.02 1.59 16 4 N -0.68 -20.77 5.65 -495.60 -2.80 -23.57 16 5 C 0.07 2.32 5.96 85.56 0.51 2.83 16 6 C 0.44 21.37 7.82 87.65 0.69 22.05 16 7 O -0.62 -35.66 15.78 -3.07 -0.05 -35.71 16 8 N -0.59 -30.52 5.28 -306.98 -1.62 -32.15 16 9 C -0.41 -24.18 9.68 84.04 0.81 -23.37 16 10 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 11 C -0.04 -2.33 5.50 84.92 0.47 -1.86 16 12 N -0.92 -51.82 13.68 21.66 0.30 -51.52 16 13 Si 1.13 49.77 29.92 68.60 2.05 51.83 16 14 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 17 C -0.08 -1.38 2.78 -9.40 -0.03 -1.40 16 18 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 19 C -0.12 -1.03 5.52 31.78 0.18 -0.86 16 20 C 0.09 0.95 6.49 86.73 0.56 1.51 16 21 N -0.62 -13.07 3.33 -811.79 -2.70 -15.77 16 22 C 0.52 12.95 7.85 87.66 0.69 13.63 16 23 O -0.60 -21.93 16.24 -3.03 -0.05 -21.98 16 24 C -0.11 -1.78 4.82 29.85 0.14 -1.63 16 25 C 0.07 1.37 4.25 86.30 0.37 1.74 16 26 N -0.55 -8.19 5.02 -948.84 -4.76 -12.96 16 27 C 0.02 0.17 9.32 127.69 1.19 1.36 16 28 C 0.02 0.29 9.57 127.69 1.22 1.51 16 29 C 0.12 3.11 6.16 86.86 0.54 3.65 16 30 H 0.05 0.84 7.35 -2.39 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.09 0.86 7.57 -2.39 -0.02 0.84 16 33 H 0.34 11.17 8.18 -89.69 -0.73 10.44 16 34 H 0.10 3.08 8.06 -2.38 -0.02 3.06 16 35 H 0.07 2.00 7.36 -2.39 -0.02 1.99 16 36 H 0.38 18.24 6.73 -92.71 -0.62 17.62 16 37 H 0.26 14.16 6.77 -92.71 -0.63 13.53 16 38 H 0.09 0.66 8.04 -2.39 -0.02 0.64 16 39 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.12 1.23 6.55 -2.38 -0.02 1.22 16 44 H 0.02 0.50 8.08 -2.39 -0.02 0.49 16 45 H 0.07 1.47 8.02 -2.39 -0.02 1.45 16 46 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 48 H 0.08 0.66 6.47 -2.39 -0.02 0.65 16 49 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 50 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 51 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 52 H 0.04 1.38 8.04 -2.39 -0.02 1.36 16 53 H 0.06 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -83.22 422.64 -1.88 -85.10 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.32 Total: 37.56 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 8.07 Total: 19.17 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -11.59 Total: -135.96 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -0.10 Total: -57.69 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.83 kcal Total: -83.22 -1.88 -85.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716969364.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.830 kcal (2) G-P(sol) polarization free energy of solvation -83.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds