Wall clock time and date at job start Sat Apr 11 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46381 * 2 1 4 4 N 1.46893 * 109.47161 * 120.00092 * 2 1 3 5 5 C 1.46905 * 110.99942 * 274.99972 * 4 2 1 6 6 C 1.50703 * 109.46764 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00490 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99630 * 180.02562 * 6 5 4 9 9 C 1.37091 * 120.00030 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99718 * 359.97438 * 9 8 6 11 11 C 1.38950 * 120.00098 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99963 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99825 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47055 * 59.99919 * 13 11 9 15 15 H 1.48505 * 109.46724 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47149 * 299.99835 * 13 11 9 17 17 C 1.53000 * 109.46945 * 240.00402 * 2 1 3 18 18 H 1.08994 * 109.47125 * 299.99619 * 17 2 1 19 19 C 1.52997 * 109.46804 * 179.97438 * 17 2 1 20 20 N 1.46504 * 109.47118 * 59.99741 * 17 2 1 21 21 C 1.34777 * 119.99665 * 204.99665 * 20 17 2 22 22 O 1.21283 * 120.00164 * 0.02562 * 21 20 17 23 23 C 1.50699 * 120.00049 * 179.97438 * 21 20 17 24 24 N 1.46897 * 109.47062 * 180.02562 * 23 21 20 25 25 C 1.46901 * 111.00410 * 293.95116 * 24 23 21 26 26 C 1.46905 * 110.99872 * 170.00171 * 24 23 21 27 27 C 1.53779 * 113.61246 * 294.79079 * 26 24 23 28 28 C 1.53779 * 87.08216 * 219.93121 * 27 26 24 29 29 C 1.53777 * 113.69165 * 197.25578 * 26 24 23 30 30 H 1.09002 * 109.47364 * 60.00370 * 1 2 3 31 31 H 1.09003 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46999 * 299.99424 * 1 2 3 33 33 H 1.00902 * 111.00046 * 151.05153 * 4 2 1 34 34 H 1.08995 * 109.47193 * 300.00413 * 5 4 2 35 35 H 1.08999 * 109.46884 * 60.00560 * 5 4 2 36 36 H 0.96996 * 119.99628 * 359.97438 * 8 6 5 37 37 H 0.96999 * 119.99332 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.47183 * 180.02562 * 19 17 2 39 39 H 1.09003 * 109.47342 * 299.99631 * 19 17 2 40 40 H 1.08999 * 109.47279 * 60.00236 * 19 17 2 41 41 H 0.96993 * 120.00129 * 25.00207 * 20 17 2 42 42 H 1.09000 * 109.47015 * 60.00031 * 23 21 20 43 43 H 1.09000 * 109.47089 * 300.00394 * 23 21 20 44 44 H 1.08999 * 109.46892 * 302.12349 * 25 24 23 45 45 H 1.09003 * 109.46480 * 62.11325 * 25 24 23 46 46 H 1.08996 * 109.47600 * 182.11221 * 25 24 23 47 47 H 1.08996 * 112.84938 * 65.98539 * 26 24 23 48 48 H 1.09005 * 113.61785 * 105.38739 * 27 26 24 49 49 H 1.08997 * 113.61901 * 334.48425 * 27 26 24 50 50 H 1.09002 * 113.61694 * 139.97895 * 28 27 26 51 51 H 1.09001 * 113.62036 * 270.88388 * 28 27 26 52 52 H 1.09002 * 113.61600 * 25.44397 * 29 26 24 53 53 H 1.09004 * 113.61397 * 254.54030 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5886 -0.5216 3.5556 7 8 2.8697 -1.6982 3.4697 8 7 2.7287 0.1205 4.7324 9 6 3.1896 -0.5562 5.8319 10 1 3.4399 -1.6040 5.7553 11 6 3.3346 0.1058 7.0449 12 7 3.0295 1.3806 7.1382 13 14 3.9619 -0.8166 8.5433 14 1 5.3181 -1.3525 8.2627 15 1 4.0259 0.1087 9.7031 16 1 3.0408 -1.9390 8.8551 17 6 2.0400 -0.7212 -1.2493 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2496 20 7 1.5516 -0.0305 -2.4454 21 6 1.4229 -0.7028 -3.6064 22 8 1.7110 -1.8797 -3.6608 23 6 0.9200 0.0074 -4.8367 24 7 0.8702 -0.9366 -5.9611 25 6 2.2197 -1.3770 -6.3390 26 6 0.1668 -0.3504 -7.1099 27 6 -1.3224 -0.0733 -6.8444 28 6 -1.5892 -0.5709 -8.2747 29 6 -0.2923 -1.3876 -8.1483 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.9174 -1.1204 1.0287 34 1 2.7588 1.0462 2.1182 35 1 1.0871 0.6162 2.5525 36 1 2.5042 1.0617 4.8010 37 1 3.1311 1.8428 7.9850 38 1 3.9333 -1.2340 -2.1399 39 1 3.9330 0.3072 -1.2498 40 1 3.9337 -1.2342 -0.3597 41 1 1.3209 0.9106 -2.4019 42 1 1.5921 0.8298 -5.0818 43 1 -0.0794 0.3991 -4.6471 44 1 2.8258 -0.5090 -6.5983 45 1 2.6780 -1.9030 -5.5015 46 1 2.1566 -2.0458 -7.1974 47 1 0.6979 0.4966 -7.5441 48 1 -1.5510 0.9827 -6.6998 49 1 -1.7543 -0.7104 -6.0727 50 1 -2.4852 -1.1853 -8.3633 51 1 -1.5381 0.2158 -9.0275 52 1 -0.4426 -2.3842 -7.7330 53 1 0.3108 -1.3929 -9.0563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717412607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:21 Heat of formation + Delta-G solvation = -68.356066 kcal Electronic energy + Delta-G solvation = -29581.008748 eV Core-core repulsion = 25487.375099 eV Total energy + Delta-G solvation = -4093.633649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20449 -40.27582 -39.86151 -38.44981 -36.09047 -35.82075 -35.23998 -33.27820 -32.11106 -30.85827 -29.19587 -27.99657 -27.07910 -26.18645 -25.91278 -24.51755 -23.22838 -21.53148 -21.22077 -21.08200 -20.21803 -19.92213 -18.42333 -17.84661 -17.44531 -16.93358 -16.86710 -16.41304 -16.36031 -16.16313 -15.95521 -15.54427 -15.41407 -15.22642 -14.78696 -14.72169 -14.36548 -14.17469 -14.11996 -13.61231 -13.50668 -13.47870 -13.29633 -13.14699 -12.90473 -12.87832 -12.68943 -12.66920 -12.58901 -12.47117 -12.42455 -12.29703 -12.11993 -11.78321 -11.60327 -11.50013 -11.41518 -11.09117 -10.69838 -10.33932 -10.08910 -10.01115 -9.34579 -9.27775 -8.46282 -5.94851 1.40052 1.42123 1.52784 1.70401 1.99515 2.06033 2.30372 2.93035 3.10394 3.21107 3.51050 3.58871 3.63900 3.81539 3.87131 3.96798 3.99124 4.06577 4.18467 4.30448 4.32167 4.34629 4.43847 4.46935 4.55219 4.56750 4.59510 4.60469 4.70602 4.72697 4.87628 4.89369 4.96429 4.97056 5.01972 5.06404 5.11176 5.11548 5.19437 5.34249 5.40443 5.41775 5.50238 5.52450 5.90608 5.93785 6.11585 6.19974 6.38055 6.60834 6.64576 7.13184 7.36102 7.56735 8.12583 8.70717 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.036662 B = 0.001576 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.548574 B =17766.567301 C =18112.470368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.072 0.928 4 N -0.681 5.681 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.571 5.571 9 C -0.337 4.337 10 H 0.077 0.923 11 C -0.010 4.010 12 N -0.918 5.918 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.269 1.269 16 H -0.274 1.274 17 C 0.152 3.848 18 H 0.066 0.934 19 C -0.163 4.163 20 N -0.708 5.708 21 C 0.511 3.489 22 O -0.566 6.566 23 C 0.041 3.959 24 N -0.533 5.533 25 C 0.025 3.975 26 C 0.050 3.950 27 C -0.129 4.129 28 C -0.136 4.136 29 C -0.130 4.130 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.345 0.655 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.416 0.584 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.030 0.970 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.093 0.907 52 H 0.073 0.927 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 7.496 -30.571 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.090 0.910 4 N -0.317 5.317 5 C -0.065 4.065 6 C 0.223 3.777 7 O -0.512 6.512 8 N -0.209 5.209 9 C -0.466 4.466 10 H 0.095 0.905 11 C -0.210 4.210 12 N -0.559 5.559 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.199 1.199 17 C 0.046 3.954 18 H 0.084 0.916 19 C -0.222 4.222 20 N -0.362 5.362 21 C 0.298 3.702 22 O -0.444 6.444 23 C -0.089 4.089 24 N -0.258 5.258 25 C -0.123 4.123 26 C -0.058 4.058 27 C -0.167 4.167 28 C -0.174 4.174 29 C -0.168 4.168 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.253 0.747 42 H 0.102 0.898 43 H 0.142 0.858 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.111 0.889 52 H 0.092 0.908 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.771 5.356 -30.182 31.624 hybrid contribution 1.519 1.259 0.736 2.106 sum -6.252 6.615 -29.446 30.821 Atomic orbital electron populations 1.21801 0.93501 1.01792 1.02340 1.21771 0.96835 0.96545 0.87444 0.90997 1.60164 1.35245 1.32663 1.03592 1.21574 1.02465 0.93613 0.88803 1.20921 0.83243 0.87984 0.85511 1.90499 1.56680 1.18365 1.85621 1.41903 1.58225 1.12596 1.08152 1.19629 1.42279 0.95993 0.88709 0.90459 1.26002 0.97184 0.96617 1.01244 1.69659 1.48439 1.09616 1.28189 0.85013 0.78678 0.77846 0.76934 1.19761 1.19366 1.19883 1.20734 0.93700 0.96893 0.84046 0.91602 1.22179 0.95295 1.02837 1.01877 1.45792 1.67360 1.14580 1.08510 1.21075 0.76849 0.87080 0.85172 1.90688 1.50652 1.17901 1.85163 1.21976 1.04130 0.93968 0.88860 1.61883 1.18609 1.38773 1.06486 1.22387 0.88652 0.99731 1.01544 1.23344 0.94493 0.97017 0.90905 1.22973 0.94000 1.01942 0.97756 1.22718 0.97596 0.99998 0.97057 1.22936 0.97655 0.98237 0.97945 0.89973 0.93980 0.92464 0.83307 0.91070 0.87650 0.76886 0.91278 0.92864 0.90744 0.92240 0.74721 0.89770 0.85802 0.95117 0.92020 0.91299 0.90646 0.90019 0.90408 0.91011 0.88895 0.90813 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.26 71.98 0.67 -2.09 16 2 C 0.08 1.80 2.28 44.92 0.10 1.90 16 3 H 0.07 1.23 7.80 -2.38 -0.02 1.21 16 4 N -0.68 -21.16 5.93 -495.57 -2.94 -24.10 16 5 C 0.07 2.24 5.97 85.56 0.51 2.75 16 6 C 0.44 20.71 7.82 87.66 0.69 21.39 16 7 O -0.63 -35.11 15.78 -3.04 -0.05 -35.16 16 8 N -0.57 -29.19 5.29 -306.98 -1.62 -30.81 16 9 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 12 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 13 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 C 0.15 3.31 2.29 44.99 0.10 3.41 16 18 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 19 C -0.16 -3.58 9.25 71.98 0.67 -2.92 16 20 N -0.71 -11.03 4.38 -442.53 -1.94 -12.97 16 21 C 0.51 10.07 7.53 87.66 0.66 10.73 16 22 O -0.57 -16.86 13.97 -3.04 -0.04 -16.90 16 23 C 0.04 0.53 5.37 85.56 0.46 0.99 16 24 N -0.53 -8.70 4.44 -898.52 -3.99 -12.69 16 25 C 0.02 0.44 9.15 127.69 1.17 1.60 16 26 C 0.05 0.57 3.17 45.44 0.14 0.72 16 27 C -0.13 -1.23 6.78 31.12 0.21 -1.02 16 28 C -0.14 -1.16 8.08 31.12 0.25 -0.91 16 29 C -0.13 -1.50 7.25 31.12 0.23 -1.27 16 30 H 0.08 1.15 7.45 -2.39 -0.02 1.13 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.18 7.45 -2.39 -0.02 1.16 16 33 H 0.35 11.51 5.87 -89.69 -0.53 10.99 16 34 H 0.07 1.99 8.05 -2.39 -0.02 1.97 16 35 H 0.11 3.13 7.44 -2.39 -0.02 3.11 16 36 H 0.40 19.07 7.90 -92.71 -0.73 18.33 16 37 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.48 6.21 -2.39 -0.01 1.46 16 41 H 0.42 3.49 8.39 -92.71 -0.78 2.72 16 42 H 0.08 0.71 8.11 -2.39 -0.02 0.69 16 43 H 0.12 1.07 7.20 -2.39 -0.02 1.05 16 44 H 0.03 0.44 8.12 -2.39 -0.02 0.42 16 45 H 0.06 1.45 5.92 -2.39 -0.01 1.44 16 46 H 0.07 1.13 7.62 -2.39 -0.02 1.11 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -74.45 421.07 -2.26 -76.71 By element: Atomic # 1 Polarization: 44.04 SS G_CDS: -1.11 Total: 42.93 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 7.13 Total: 16.83 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -10.21 Total: -129.43 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -74.45 -2.26 -76.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717412607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.350 kcal (2) G-P(sol) polarization free energy of solvation -74.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds