Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.99793 * 2 1 4 4 C 1.54320 * 109.88355 * 238.89530 * 2 1 3 5 5 H 1.08999 * 110.87600 * 336.83058 * 4 2 1 6 6 N 1.46912 * 110.71624 * 100.03146 * 4 2 1 7 7 C 1.46896 * 110.99636 * 199.97436 * 6 4 2 8 8 C 1.50703 * 109.46774 * 179.97438 * 7 6 4 9 9 O 1.21292 * 119.99840 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99773 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00039 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99610 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00384 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99833 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00199 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00192 * 15 13 11 19 19 C 1.55153 * 102.94198 * 218.39099 * 4 2 1 20 20 C 1.54903 * 101.58366 * 35.50364 * 19 4 2 21 21 N 1.47021 * 109.87822 * 121.09133 * 2 1 3 22 22 C 1.34785 * 125.65128 * 298.32398 * 21 2 1 23 23 O 1.21284 * 119.99595 * 0.02562 * 22 21 2 24 24 C 1.50696 * 120.00206 * 180.02562 * 22 21 2 25 25 C 1.52998 * 109.46837 * 179.97438 * 24 22 21 26 26 C 1.53005 * 109.46941 * 180.02562 * 25 24 22 27 27 N 1.46902 * 109.47429 * 180.02562 * 26 25 24 28 28 C 1.46896 * 111.00026 * 66.04053 * 27 26 25 29 29 C 1.46892 * 111.00113 * 189.99874 * 27 26 25 30 30 H 1.08999 * 109.47114 * 181.09767 * 1 2 3 31 31 H 1.08994 * 109.47056 * 301.10237 * 1 2 3 32 32 H 1.09005 * 109.46807 * 61.10008 * 1 2 3 33 33 H 1.00901 * 110.99811 * 76.02300 * 6 4 2 34 34 H 1.09001 * 109.47275 * 60.00237 * 7 6 4 35 35 H 1.08996 * 109.47530 * 299.99593 * 7 6 4 36 36 H 0.96992 * 120.00503 * 359.97438 * 10 8 7 37 37 H 0.96993 * 119.99996 * 359.97438 * 14 13 11 38 38 H 1.09003 * 111.00302 * 153.58048 * 19 4 2 39 39 H 1.09003 * 111.00413 * 277.42788 * 19 4 2 40 40 H 1.09009 * 110.36469 * 81.82512 * 20 19 4 41 41 H 1.09000 * 110.37261 * 204.03474 * 20 19 4 42 42 H 1.08999 * 109.47165 * 299.99666 * 24 22 21 43 43 H 1.09003 * 109.47045 * 59.99603 * 24 22 21 44 44 H 1.09004 * 109.47475 * 299.99712 * 25 24 22 45 45 H 1.08993 * 109.47620 * 59.99874 * 25 24 22 46 46 H 1.09004 * 109.46584 * 299.99992 * 26 25 24 47 47 H 1.08993 * 109.47283 * 59.99403 * 26 25 24 48 48 H 1.08998 * 109.47367 * 60.00224 * 28 27 26 49 49 H 1.08996 * 109.47562 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.47308 * 300.00218 * 28 27 26 51 51 H 1.09002 * 109.47341 * 59.99528 * 29 27 26 52 52 H 1.09000 * 109.47289 * 179.97438 * 29 27 26 53 53 H 1.09000 * 109.47133 * 299.99622 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 -1.2426 5 1 1.3065 -1.4460 -1.6210 6 7 2.4567 0.1985 -2.2903 7 6 2.5022 -0.4571 -3.6041 8 6 2.9166 0.5445 -4.6511 9 8 3.1504 1.6917 -4.3340 10 7 3.0263 0.1658 -5.9399 11 6 3.4027 1.0771 -6.8925 12 1 3.6117 2.0984 -6.6101 13 6 3.5163 0.6866 -8.2212 14 7 3.2624 -0.5561 -8.5647 15 14 4.0285 1.9285 -9.5192 16 1 4.0741 1.2660 -10.8475 17 1 5.3724 2.4659 -9.1871 18 1 3.0456 3.0411 -9.5550 19 6 3.2876 -1.5143 -0.6921 20 6 2.8145 -1.8793 0.7371 21 7 2.0300 -0.7140 1.1840 22 6 1.8084 -0.3611 2.4658 23 8 1.1450 0.6224 2.7180 24 6 2.3850 -1.1885 3.5856 25 6 1.9881 -0.5748 4.9297 26 6 2.5741 -1.4145 6.0666 27 7 2.1926 -0.8256 7.3572 28 6 0.7416 -0.9152 7.5684 29 6 2.9255 -1.4585 8.4618 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8799 32 1 -0.3633 0.4967 -0.8997 33 1 3.3429 0.6274 -2.0693 34 1 1.5154 -0.8503 -3.8484 35 1 3.2227 -1.2745 -3.5776 36 1 2.8389 -0.7514 -6.1935 37 1 2.9961 -1.2008 -7.8908 38 1 3.4852 -2.4112 -1.2792 39 1 4.1654 -0.8689 -0.6601 40 1 2.1885 -2.7714 0.7132 41 1 3.6716 -2.0357 1.3921 42 1 1.9985 -2.2057 3.5220 43 1 3.4716 -1.2068 3.5015 44 1 2.3750 0.4423 4.9931 45 1 0.9016 -0.5561 5.0140 46 1 2.1876 -2.4317 6.0033 47 1 3.6606 -1.4328 5.9821 48 1 0.4369 -1.9617 7.5581 49 1 0.4864 -0.4717 8.5308 50 1 0.2248 -0.3784 6.7729 51 1 3.9963 -1.3167 8.3158 52 1 2.6244 -1.0035 9.4055 53 1 2.6998 -2.5246 8.4839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717798492.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -94.203961 kcal Electronic energy + Delta-G solvation = -29388.313242 eV Core-core repulsion = 25293.558744 eV Total energy + Delta-G solvation = -4094.754498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.40584 -40.31469 -39.18320 -38.43122 -36.52765 -35.66405 -34.32314 -33.14277 -32.37549 -31.65638 -28.64872 -28.47133 -28.05845 -26.35920 -25.09853 -24.52588 -23.31653 -22.01009 -21.66342 -21.40571 -19.98268 -19.83873 -18.36936 -17.91977 -17.58337 -17.03014 -16.78903 -16.47947 -16.38177 -15.96574 -15.69963 -15.60549 -15.51514 -15.34450 -14.97511 -14.77209 -14.34704 -14.22072 -14.08545 -13.81220 -13.40093 -13.34302 -13.29364 -13.19746 -13.11054 -12.85714 -12.82448 -12.68839 -12.60758 -12.58052 -12.30927 -12.22027 -12.02530 -11.91532 -11.88406 -11.76148 -11.56177 -11.51995 -10.83917 -10.40754 -10.09945 -9.69187 -9.35596 -9.30612 -8.91619 -6.05680 1.53063 1.55406 1.64144 1.82917 1.88521 2.01921 2.41364 2.80733 3.02061 3.17607 3.29868 3.44012 3.58906 3.83147 3.95512 3.97812 4.07931 4.12784 4.21339 4.24415 4.28328 4.34766 4.38665 4.41910 4.48573 4.49876 4.51488 4.59129 4.61256 4.65191 4.69778 4.74226 4.76082 4.79674 4.99200 5.00562 5.01981 5.02461 5.08626 5.16773 5.20689 5.30641 5.39587 5.60507 5.94394 6.00297 6.07123 6.11505 6.27101 6.55040 6.59340 6.75815 7.17678 7.45413 7.94414 8.56393 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.036864 B = 0.001536 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.361985 B =18229.582271 C =18349.181603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.142 3.858 3 H 0.049 0.951 4 C 0.088 3.912 5 H 0.111 0.889 6 N -0.677 5.677 7 C 0.071 3.929 8 C 0.439 3.561 9 O -0.621 6.621 10 N -0.585 5.585 11 C -0.412 4.412 12 H 0.071 0.929 13 C -0.039 4.039 14 N -0.915 5.915 15 Si 1.131 2.869 16 H -0.272 1.272 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.163 4.163 20 C 0.103 3.897 21 N -0.616 5.616 22 C 0.519 3.481 23 O -0.587 6.587 24 C -0.122 4.122 25 C -0.096 4.096 26 C 0.060 3.940 27 N -0.571 5.571 28 C 0.021 3.979 29 C 0.025 3.975 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.346 0.654 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.260 0.740 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.032 0.968 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.073 0.927 52 H 0.071 0.929 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -13.506 28.915 31.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 H 0.067 0.933 4 C -0.023 4.023 5 H 0.129 0.871 6 N -0.308 5.308 7 C -0.061 4.061 8 C 0.227 3.773 9 O -0.507 6.507 10 N -0.224 5.224 11 C -0.542 4.542 12 H 0.089 0.911 13 C -0.238 4.238 14 N -0.555 5.555 15 Si 0.952 3.048 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.203 4.203 20 C -0.019 4.019 21 N -0.350 5.350 22 C 0.309 3.691 23 O -0.467 6.467 24 C -0.162 4.162 25 C -0.134 4.134 26 C -0.068 4.068 27 N -0.295 5.295 28 C -0.127 4.127 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.220 0.780 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.092 0.908 52 H 0.090 0.910 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.157 -11.271 27.608 29.842 hybrid contribution -0.058 -1.413 1.427 2.009 sum -1.215 -12.684 29.035 31.707 Atomic orbital electron populations 1.21954 0.94584 1.02313 1.01699 1.21321 0.94599 0.95700 0.84656 0.93254 1.22690 0.97897 0.92156 0.89564 0.87106 1.59888 1.38294 1.32154 1.00474 1.21528 1.03085 0.93813 0.87718 1.20962 0.82603 0.89960 0.83757 1.90516 1.56111 1.22531 1.81509 1.41961 1.61735 1.11972 1.06754 1.20512 1.48360 0.94593 0.90686 0.91120 1.27740 0.95572 1.01255 0.99211 1.70970 1.44384 1.03326 1.36789 0.82652 0.77062 0.72125 0.73011 1.19634 1.19840 1.20100 1.23573 0.97656 1.02345 0.96715 1.22520 0.96167 0.88075 0.95145 1.48721 1.52583 1.29175 1.04555 1.21116 0.79744 0.85086 0.83108 1.90698 1.42190 1.29934 1.83897 1.21612 1.03556 1.00203 0.90863 1.21237 1.00731 0.99321 0.92132 1.22125 1.01156 0.95696 0.87801 1.61924 1.06811 1.57609 1.03178 1.22432 0.87696 1.00049 1.02518 1.22407 0.99193 0.96889 0.93813 0.91205 0.93678 0.91945 0.83464 0.87458 0.90457 0.77988 0.92878 0.87357 0.91055 0.88655 0.87844 0.86288 0.86530 0.92932 0.92739 0.93543 0.89547 0.94976 0.90936 0.91975 0.90776 0.91028 0.95032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.10 71.98 0.66 -2.97 16 2 C 0.14 3.41 3.21 45.34 0.15 3.56 16 3 H 0.05 1.54 8.03 -2.39 -0.02 1.52 16 4 C 0.09 1.79 2.76 46.10 0.13 1.92 16 5 H 0.11 1.96 7.61 -2.39 -0.02 1.94 16 6 N -0.68 -19.89 5.91 -489.44 -2.89 -22.78 16 7 C 0.07 2.18 6.02 85.56 0.52 2.69 16 8 C 0.44 20.27 7.82 87.66 0.69 20.96 16 9 O -0.62 -34.47 15.78 -3.07 -0.05 -34.52 16 10 N -0.58 -29.01 5.28 -306.98 -1.62 -30.63 16 11 C -0.41 -23.42 9.68 84.04 0.81 -22.60 16 12 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 13 C -0.04 -2.11 5.50 84.93 0.47 -1.64 16 14 N -0.92 -50.24 13.68 21.66 0.30 -49.94 16 15 Si 1.13 48.30 29.92 68.60 2.05 50.36 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 19 C -0.16 -2.26 6.63 31.98 0.21 -2.05 16 20 C 0.10 1.08 6.69 86.85 0.58 1.66 16 21 N -0.62 -11.74 3.06 -788.05 -2.41 -14.16 16 22 C 0.52 11.30 7.64 87.65 0.67 11.97 16 23 O -0.59 -18.69 15.03 -3.04 -0.05 -18.74 16 24 C -0.12 -1.47 4.71 29.85 0.14 -1.33 16 25 C -0.10 -1.50 4.43 30.59 0.14 -1.36 16 26 C 0.06 0.68 4.96 86.30 0.43 1.11 16 27 N -0.57 -8.00 5.02 -948.88 -4.76 -12.76 16 28 C 0.02 0.27 9.32 127.69 1.19 1.46 16 29 C 0.02 0.24 9.57 127.69 1.22 1.46 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.30 6.91 -2.39 -0.02 1.28 16 32 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.35 11.02 8.00 -89.69 -0.72 10.31 16 34 H 0.11 2.92 8.08 -2.39 -0.02 2.90 16 35 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 36 H 0.39 17.29 6.73 -92.71 -0.62 16.66 16 37 H 0.26 13.70 6.77 -92.71 -0.63 13.07 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.16 7.81 -2.39 -0.02 1.14 16 40 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.10 0.60 7.48 -2.39 -0.02 0.58 16 42 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.12 0.89 7.85 -2.39 -0.02 0.87 16 44 H 0.05 1.10 8.10 -2.39 -0.02 1.09 16 45 H 0.05 1.03 6.51 -2.39 -0.02 1.01 16 46 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 47 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 48 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 50 H 0.06 0.94 6.47 -2.39 -0.02 0.92 16 51 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 52 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 53 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -79.34 422.24 -1.75 -81.08 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -0.30 Total: 37.25 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 7.99 Total: 14.84 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -11.39 Total: -130.28 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.09 Total: -53.26 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.05 Total: 50.36 kcal Total: -79.34 -1.75 -81.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717798492.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.119 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds