Wall clock time and date at job start Sat Apr 11 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.99867 * 2 1 4 4 C 1.54328 * 109.87917 * 121.09192 * 2 1 3 5 5 H 1.09006 * 110.87036 * 23.17176 * 4 2 1 6 6 N 1.46895 * 110.72289 * 259.97669 * 4 2 1 7 7 C 1.46893 * 111.00318 * 160.02410 * 6 4 2 8 8 C 1.50708 * 109.47146 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99815 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99719 * 180.02562 * 8 7 6 11 11 C 1.37101 * 119.99349 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00515 * 359.97438 * 11 10 8 13 13 C 1.38955 * 119.99490 * 179.97438 * 11 10 8 14 14 N 1.31413 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99845 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47194 * 300.00675 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00238 * 15 13 11 19 19 C 1.55157 * 102.94147 * 141.60754 * 4 2 1 20 20 C 1.54910 * 101.58207 * 324.49963 * 19 4 2 21 21 N 1.47012 * 109.88066 * 238.89784 * 2 1 3 22 22 C 1.34774 * 125.65109 * 61.69525 * 21 2 1 23 23 O 1.21282 * 119.99829 * 359.96142 * 22 21 2 24 24 C 1.50697 * 120.00391 * 179.97438 * 22 21 2 25 25 C 1.53005 * 109.47340 * 179.97438 * 24 22 21 26 26 C 1.53000 * 109.47418 * 179.97438 * 25 24 22 27 27 N 1.46896 * 109.47338 * 180.02562 * 26 25 24 28 28 C 1.46898 * 110.99864 * 66.04879 * 27 26 25 29 29 C 1.46902 * 111.00164 * 190.00023 * 27 26 25 30 30 H 1.09002 * 109.47003 * 298.91243 * 1 2 3 31 31 H 1.09006 * 109.47111 * 58.90806 * 1 2 3 32 32 H 1.08993 * 109.47433 * 178.90529 * 1 2 3 33 33 H 1.00899 * 111.00063 * 36.06586 * 6 4 2 34 34 H 1.09002 * 109.47091 * 59.99845 * 7 6 4 35 35 H 1.09000 * 109.47343 * 299.99463 * 7 6 4 36 36 H 0.96996 * 120.00564 * 359.97438 * 10 8 7 37 37 H 0.97001 * 119.99781 * 179.97438 * 14 13 11 38 38 H 1.08994 * 111.00197 * 82.57217 * 19 4 2 39 39 H 1.08996 * 111.00213 * 206.38877 * 19 4 2 40 40 H 1.08996 * 110.36602 * 155.85069 * 20 19 4 41 41 H 1.08999 * 110.36617 * 278.06014 * 20 19 4 42 42 H 1.08993 * 109.47530 * 299.99680 * 24 22 21 43 43 H 1.09001 * 109.46996 * 59.99988 * 24 22 21 44 44 H 1.08995 * 109.47511 * 300.00481 * 25 24 22 45 45 H 1.09001 * 109.46639 * 60.00317 * 25 24 22 46 46 H 1.09007 * 109.47117 * 300.00475 * 26 25 24 47 47 H 1.09003 * 109.46798 * 59.99835 * 26 25 24 48 48 H 1.09002 * 109.47633 * 60.00070 * 28 27 26 49 49 H 1.09006 * 109.47076 * 179.97438 * 28 27 26 50 50 H 1.09001 * 109.47551 * 299.99938 * 28 27 26 51 51 H 1.09000 * 109.46898 * 60.00211 * 29 27 26 52 52 H 1.08991 * 109.47227 * 179.97438 * 29 27 26 53 53 H 1.09004 * 109.46912 * 300.00412 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 1 1.3063 -1.4457 1.6212 6 7 2.4564 0.1987 2.2905 7 6 2.5018 -0.4566 3.6043 8 6 2.9172 0.5449 4.6511 9 8 3.1527 1.6915 4.3337 10 7 3.0279 0.1660 5.9398 11 6 3.4053 1.0772 6.8921 12 1 3.6142 2.0984 6.6096 13 6 3.5189 0.6868 8.2208 14 7 3.2642 -0.5557 8.5646 15 14 4.0338 1.9281 9.5183 16 1 4.0791 1.2659 10.8466 17 1 5.3784 2.4634 9.1852 18 1 3.0526 3.0422 9.5544 19 6 3.2875 -1.5143 0.6926 20 6 2.8144 -1.8795 -0.7366 21 7 2.0299 -0.7142 -1.1838 22 6 1.8087 -0.3614 -2.4656 23 8 1.1454 0.6221 -2.7180 24 6 2.3853 -1.1890 -3.5852 25 6 1.9879 -0.5760 -4.9296 26 6 2.5738 -1.4159 -6.0663 27 7 2.1927 -0.8270 -7.3570 28 6 2.8160 0.4907 -7.5389 29 6 2.5315 -1.7274 -8.4671 30 1 -0.3633 0.4969 0.8996 31 1 -0.3634 0.5307 -0.8801 32 1 -0.3634 -1.0274 -0.0196 33 1 1.8437 1.0001 2.3070 34 1 3.2223 -1.2741 3.5780 35 1 1.5149 -0.8498 3.8486 36 1 2.8399 -0.7511 6.1936 37 1 3.3439 -0.8283 9.4921 38 1 4.1653 -0.8690 0.6605 39 1 3.4854 -2.4107 1.2802 40 1 3.6715 -2.0341 -1.3920 41 1 2.1901 -2.7727 -0.7129 42 1 3.4719 -1.2075 -3.5011 43 1 1.9986 -2.2061 -3.5215 44 1 0.9013 -0.5577 -5.0136 45 1 2.3743 0.4412 -4.9934 46 1 3.6604 -1.4336 -5.9821 47 1 2.1878 -2.4332 -6.0025 48 1 3.9007 0.3869 -7.5088 49 1 2.5176 0.9039 -8.5025 50 1 2.4928 1.1590 -6.7408 51 1 2.0013 -2.6718 -8.3437 52 1 2.2383 -1.2673 -9.4106 53 1 3.6059 -1.9116 -8.4705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717798493.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:38 Heat of formation + Delta-G solvation = -93.665082 kcal Electronic energy + Delta-G solvation = -29350.081511 eV Core-core repulsion = 25255.350380 eV Total energy + Delta-G solvation = -4094.731130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.37095 -40.15411 -39.11693 -38.40062 -36.19585 -35.53918 -34.29520 -33.26378 -32.38868 -31.67158 -28.68024 -28.47590 -28.09836 -26.49306 -25.10332 -24.58863 -23.25341 -21.79271 -21.42603 -21.08623 -20.01201 -19.73155 -18.14351 -17.66737 -17.59071 -16.90456 -16.84456 -16.49291 -16.35593 -16.03137 -15.81775 -15.61430 -15.51080 -15.16508 -14.83421 -14.69356 -14.41338 -14.23369 -14.02104 -13.83715 -13.47996 -13.39444 -13.27769 -13.12791 -13.06425 -12.83523 -12.82560 -12.69605 -12.57941 -12.43318 -12.40640 -12.28649 -12.17220 -12.12096 -11.92809 -11.65207 -11.54516 -11.49855 -10.81211 -10.34209 -10.00796 -9.67411 -9.38313 -9.30119 -8.46115 -5.94638 1.40066 1.42326 1.52773 1.65652 1.90228 2.06480 2.30006 2.91583 3.03320 3.21366 3.33926 3.50936 3.67385 3.76862 3.97703 4.04510 4.10870 4.23549 4.27168 4.28798 4.33664 4.38828 4.40901 4.50383 4.50889 4.53766 4.56462 4.60820 4.63110 4.66757 4.74503 4.75385 4.78899 4.84218 4.98388 5.01483 5.03322 5.07138 5.16104 5.19060 5.27210 5.33522 5.41316 5.41618 5.89739 6.07442 6.10781 6.12688 6.29511 6.56972 6.61207 7.13515 7.18566 7.57244 8.13089 8.70838 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.033985 B = 0.001541 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.688324 B =18170.996678 C =18265.734242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.135 3.865 3 H 0.054 0.946 4 C 0.081 3.919 5 H 0.079 0.921 6 N -0.673 5.673 7 C 0.069 3.931 8 C 0.436 3.564 9 O -0.626 6.626 10 N -0.571 5.571 11 C -0.337 4.337 12 H 0.077 0.923 13 C -0.009 4.009 14 N -0.918 5.918 15 Si 0.990 3.010 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.123 4.123 20 C 0.101 3.899 21 N -0.614 5.614 22 C 0.519 3.481 23 O -0.587 6.587 24 C -0.123 4.123 25 C -0.095 4.095 26 C 0.059 3.941 27 N -0.569 5.569 28 C 0.021 3.979 29 C 0.025 3.975 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.343 0.657 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.089 0.911 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -12.350 -27.924 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.072 0.928 4 C -0.029 4.029 5 H 0.097 0.903 6 N -0.305 5.305 7 C -0.063 4.063 8 C 0.224 3.776 9 O -0.513 6.513 10 N -0.208 5.208 11 C -0.466 4.466 12 H 0.095 0.905 13 C -0.209 4.209 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.021 4.021 21 N -0.347 5.347 22 C 0.310 3.690 23 O -0.467 6.467 24 C -0.163 4.163 25 C -0.134 4.134 26 C -0.068 4.068 27 N -0.293 5.293 28 C -0.128 4.128 29 C -0.123 4.123 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.048 0.952 49 H 0.091 0.909 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.090 0.910 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.336 -11.184 -28.283 30.443 hybrid contribution -0.014 0.512 1.306 1.403 sum -1.350 -10.672 -26.977 29.042 Atomic orbital electron populations 1.22066 0.94384 1.02717 1.02144 1.21470 0.94402 0.95988 0.85118 0.92798 1.22682 0.97298 0.93363 0.89534 0.90322 1.60163 1.58054 1.09271 1.03055 1.21560 1.01977 0.95390 0.87404 1.20923 0.83093 0.89798 0.83831 1.90504 1.56626 1.22598 1.81524 1.41898 1.60410 1.12629 1.05911 1.19621 1.44904 0.93848 0.88252 0.90505 1.25983 0.96844 0.98698 0.99422 1.69655 1.48963 1.17298 1.19950 0.85029 0.78752 0.77793 0.77010 1.19372 1.19819 1.19864 1.22900 0.97118 1.00932 0.95243 1.22614 0.96127 0.87993 0.95344 1.48643 1.52561 1.29129 1.04411 1.21107 0.79718 0.85090 0.83063 1.90690 1.42234 1.29924 1.83893 1.21614 1.03348 1.00463 0.90856 1.21235 1.01175 0.98877 0.92089 1.22135 0.98241 0.98668 0.87787 1.61942 1.60013 1.04190 1.03179 1.22437 0.96751 0.90962 1.02606 1.22414 0.99124 0.97066 0.93723 0.91584 0.93175 0.91070 0.83815 0.87154 0.91225 0.76851 0.91273 0.91217 0.87771 0.87836 0.88569 0.86792 0.86016 0.92505 0.93118 0.93843 0.89231 0.95171 0.90869 0.92023 0.90581 0.91026 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.10 71.98 0.65 -2.88 16 2 C 0.13 3.19 2.98 45.35 0.14 3.33 16 3 H 0.05 1.63 7.97 -2.39 -0.02 1.61 16 4 C 0.08 1.74 2.76 46.11 0.13 1.87 16 5 H 0.08 1.45 7.61 -2.38 -0.02 1.43 16 6 N -0.67 -20.33 5.93 -489.44 -2.90 -23.23 16 7 C 0.07 2.20 6.02 85.56 0.52 2.72 16 8 C 0.44 20.34 7.82 87.66 0.69 21.02 16 9 O -0.63 -34.71 15.78 -3.05 -0.05 -34.76 16 10 N -0.57 -28.77 5.29 -306.98 -1.62 -30.40 16 11 C -0.34 -19.03 9.68 84.04 0.81 -18.21 16 12 H 0.08 4.65 7.16 -2.92 -0.02 4.63 16 13 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 14 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 15 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 16 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 C -0.12 -2.04 6.71 31.99 0.21 -1.83 16 20 C 0.10 1.18 6.69 86.85 0.58 1.77 16 21 N -0.61 -12.02 3.06 -788.08 -2.41 -14.44 16 22 C 0.52 11.41 7.64 87.66 0.67 12.08 16 23 O -0.59 -18.52 15.03 -3.04 -0.05 -18.57 16 24 C -0.12 -1.52 4.71 29.85 0.14 -1.38 16 25 C -0.10 -1.50 4.43 30.60 0.14 -1.37 16 26 C 0.06 0.69 4.96 86.30 0.43 1.12 16 27 N -0.57 -8.04 5.02 -948.84 -4.76 -12.80 16 28 C 0.02 0.28 9.32 127.69 1.19 1.47 16 29 C 0.02 0.24 9.57 127.69 1.22 1.46 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.36 6.91 -2.38 -0.02 1.35 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.34 11.44 8.15 -89.69 -0.73 10.71 16 34 H 0.11 3.05 8.13 -2.39 -0.02 3.03 16 35 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 37 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 0.73 7.47 -2.39 -0.02 0.72 16 41 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.95 7.85 -2.39 -0.02 0.93 16 43 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 45 H 0.05 1.00 6.51 -2.39 -0.02 0.99 16 46 H 0.04 0.44 8.12 -2.38 -0.02 0.42 16 47 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 48 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 50 H 0.06 0.98 6.47 -2.39 -0.02 0.97 16 51 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 52 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 53 H 0.03 0.26 8.14 -2.38 -0.02 0.24 16 Total: -1.00 -75.46 424.23 -2.07 -77.53 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.57 Total: 39.29 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 7.98 Total: 21.13 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -11.42 Total: -129.33 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.09 Total: -53.33 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.46 -2.07 -77.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717798493.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.138 kcal (2) G-P(sol) polarization free energy of solvation -75.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds