Wall clock time and date at job start Sat Apr 11 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47008 * 2 1 4 4 N 1.46496 * 109.47439 * 120.00150 * 2 1 3 5 5 C 1.34777 * 120.00271 * 274.99914 * 4 2 1 6 6 O 1.21286 * 119.99594 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00202 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47240 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47233 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47233 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47309 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00271 * 179.97438 * 11 10 9 13 13 N 1.34780 * 119.99926 * 179.97438 * 12 11 10 14 14 O 1.21580 * 119.99668 * 0.02562 * 12 11 10 15 15 C 1.52999 * 109.46928 * 240.00371 * 2 1 3 16 16 C 1.53047 * 109.45994 * 180.02562 * 15 2 1 17 17 C 1.53198 * 109.31057 * 178.60260 * 16 15 2 18 18 N 1.46926 * 108.76520 * 54.65393 * 17 16 15 19 19 C 1.36939 * 120.62456 * 126.40336 * 18 17 16 20 20 H 1.07994 * 120.00315 * 331.82970 * 19 18 17 21 21 C 1.38814 * 119.99773 * 151.82433 * 19 18 17 22 22 N 1.31628 * 119.99879 * 343.07955 * 21 19 18 23 23 Si 1.86799 * 120.00098 * 163.07397 * 21 19 18 24 24 H 1.48497 * 109.47098 * 90.00484 * 23 21 19 25 25 H 1.48501 * 109.46886 * 210.00325 * 23 21 19 26 26 H 1.48497 * 109.47186 * 330.00049 * 23 21 19 27 27 C 1.46920 * 118.74173 * 306.38476 * 18 17 16 28 28 C 1.53046 * 109.46164 * 59.97127 * 15 2 1 29 29 H 1.09001 * 109.47382 * 59.99499 * 1 2 3 30 30 H 1.09004 * 109.46890 * 299.99709 * 1 2 3 31 31 H 1.09004 * 109.47008 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99983 * 95.00264 * 4 2 1 33 33 H 1.08996 * 109.47066 * 300.00196 * 7 5 4 34 34 H 1.09005 * 109.46769 * 60.00120 * 7 5 4 35 35 H 1.09001 * 109.46518 * 300.00330 * 8 7 5 36 36 H 1.09003 * 109.46718 * 59.99744 * 8 7 5 37 37 H 1.08996 * 109.46972 * 300.00028 * 9 8 7 38 38 H 1.09005 * 109.46870 * 59.99956 * 9 8 7 39 39 H 1.08996 * 109.47164 * 299.99910 * 10 9 8 40 40 H 1.08997 * 109.46942 * 60.00040 * 10 9 8 41 41 H 0.97006 * 119.99828 * 359.97438 * 11 10 9 42 42 H 0.96994 * 119.99857 * 0.02562 * 13 12 11 43 43 H 0.96996 * 119.99785 * 180.02562 * 13 12 11 44 44 H 1.08991 * 109.46024 * 299.99722 * 15 2 1 45 45 H 1.08997 * 109.49540 * 298.56792 * 16 15 2 46 46 H 1.08995 * 109.49450 * 58.66508 * 16 15 2 47 47 H 1.09000 * 109.59504 * 294.86995 * 17 16 15 48 48 H 1.08994 * 109.69924 * 174.50893 * 17 16 15 49 49 H 0.97001 * 119.99789 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.58502 * 293.81932 * 27 18 17 51 51 H 1.09007 * 109.70190 * 173.46646 * 27 18 17 52 52 H 1.09002 * 109.49252 * 301.33912 * 28 15 2 53 53 H 1.09006 * 109.49667 * 61.39927 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6490 -0.7289 3.5877 8 6 2.7001 0.2540 4.7590 9 6 3.2102 -0.4672 6.0082 10 6 3.2618 0.5159 7.1794 11 7 3.7497 -0.1749 8.3756 12 6 3.8790 0.4975 9.5365 13 7 4.3273 -0.1382 10.6372 14 8 3.5902 1.6773 9.5910 15 6 2.0399 -0.7212 -1.2493 16 6 3.5704 -0.7216 -1.2488 17 6 4.0772 -1.4747 -2.4828 18 7 3.4746 -0.8767 -3.6820 19 6 4.2605 -0.4512 -4.7195 20 1 5.2717 -0.1218 -4.5312 21 6 3.7576 -0.4432 -6.0133 22 7 2.6776 -1.1373 -6.3038 23 14 4.6134 0.5525 -7.3420 24 1 5.6368 -0.2906 -8.0106 25 1 3.6138 1.0047 -8.3427 26 1 5.2699 1.7350 -6.7289 27 6 2.0128 -0.7444 -3.7470 28 6 1.5290 0.0001 -2.4987 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 1.1525 33 1 1.9761 -1.5507 3.8325 34 1 3.6482 -1.1214 3.3984 35 1 3.3727 1.0761 4.5143 36 1 1.7007 0.6462 4.9480 37 1 2.5379 -1.2895 6.2529 38 1 4.2096 -0.8590 5.8188 39 1 3.9344 1.3379 6.9344 40 1 2.2626 0.9080 7.3689 41 1 3.9797 -1.1163 8.3322 42 1 4.5573 -1.0795 10.5937 43 1 4.4200 0.3457 11.4727 44 1 1.6765 -1.7487 -1.2491 45 1 3.9344 0.3055 -1.2741 46 1 3.9337 -1.2148 -0.3472 47 1 3.7902 -2.5240 -2.4142 48 1 5.1627 -1.3958 -2.5412 49 1 2.3264 -1.1321 -7.2080 50 1 1.5575 -1.7342 -3.7815 51 1 1.7339 -0.1827 -4.6386 52 1 0.4393 0.0208 -2.4867 53 1 1.9121 1.0206 -2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717979766.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:43 Heat of formation + Delta-G solvation = -107.659157 kcal Electronic energy + Delta-G solvation = -29285.198214 eV Core-core repulsion = 25189.860255 eV Total energy + Delta-G solvation = -4095.337959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.02028 -40.79312 -39.42280 -37.15619 -36.64768 -34.95596 -34.46767 -34.08459 -32.85240 -31.41437 -30.78532 -29.63521 -27.15344 -25.63378 -24.35705 -23.63377 -22.45780 -22.20305 -21.63797 -21.29642 -20.56847 -19.16936 -18.72687 -18.23534 -17.73532 -17.18812 -17.02269 -16.72179 -16.35518 -15.79267 -15.73446 -15.49557 -15.30932 -15.25848 -14.89364 -14.84439 -14.76526 -14.33464 -14.04886 -13.94140 -13.49266 -13.38940 -13.26157 -12.90413 -12.73963 -12.65833 -12.59481 -12.43317 -12.34402 -12.15833 -12.05560 -12.00899 -11.78076 -11.51815 -11.50959 -11.46041 -11.22139 -11.05720 -10.74079 -10.69747 -10.51645 -9.96143 -9.95492 -8.64725 -7.86930 -5.31275 1.45063 1.47388 1.56547 1.79151 1.96763 2.17204 2.35236 2.51394 3.27534 3.66994 3.71330 3.75207 3.84754 3.92158 3.99579 4.06791 4.10753 4.36652 4.41672 4.45548 4.49945 4.57182 4.60413 4.62717 4.76432 4.81155 4.82507 4.89121 4.91933 4.92708 5.03192 5.05974 5.07589 5.15926 5.22098 5.31775 5.35787 5.38873 5.43719 5.47031 5.52282 5.56131 5.64776 5.67014 5.82118 5.92398 6.04960 6.40788 6.71631 7.13753 7.17005 7.42038 7.66911 7.89732 8.39841 9.18951 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.001539 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.115201 B =18189.053082 C =18685.848413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.056 0.944 4 N -0.712 5.712 5 C 0.504 3.496 6 O -0.594 6.594 7 C -0.129 4.129 8 C -0.101 4.101 9 C -0.112 4.112 10 C 0.135 3.865 11 N -0.730 5.730 12 C 0.693 3.307 13 N -0.848 5.848 14 O -0.654 6.654 15 C -0.072 4.072 16 C -0.112 4.112 17 C 0.140 3.860 18 N -0.612 5.612 19 C -0.264 4.264 20 H 0.062 0.938 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.274 1.274 27 C 0.178 3.822 28 C -0.123 4.123 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.415 0.585 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.416 0.584 42 H 0.415 0.585 43 H 0.419 0.581 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.021 0.979 48 H 0.048 0.952 49 H 0.250 0.750 50 H 0.001 0.999 51 H 0.048 0.952 52 H 0.074 0.926 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 -7.772 30.410 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.075 0.925 4 N -0.364 5.364 5 C 0.292 3.708 6 O -0.474 6.474 7 C -0.169 4.169 8 C -0.140 4.140 9 C -0.150 4.150 10 C 0.010 3.990 11 N -0.388 5.388 12 C 0.391 3.609 13 N -0.417 5.417 14 O -0.537 6.537 15 C -0.091 4.091 16 C -0.151 4.151 17 C 0.015 3.985 18 N -0.336 5.336 19 C -0.395 4.395 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.200 1.200 27 C 0.052 3.948 28 C -0.162 4.162 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.253 0.747 42 H 0.247 0.753 43 H 0.252 0.748 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.039 0.961 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.019 0.981 51 H 0.067 0.933 52 H 0.092 0.908 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.246 -6.017 30.164 30.759 hybrid contribution 0.590 -0.169 -1.073 1.236 sum 0.344 -6.187 29.091 29.744 Atomic orbital electron populations 1.22135 0.94768 1.02760 1.01786 1.20770 0.94209 0.96057 0.83979 0.92528 1.46042 1.66722 1.14686 1.08974 1.21508 0.76544 0.86973 0.85746 1.90700 1.52281 1.18572 1.85881 1.21699 1.05099 0.99639 0.90434 1.21169 1.01661 0.97761 0.93388 1.21671 1.03805 0.97861 0.91681 1.21176 0.98570 0.95538 0.83740 1.44923 1.71078 1.14497 1.08282 1.16327 0.78146 0.84491 0.81955 1.42793 1.72090 1.15715 1.11094 1.90953 1.59672 1.17293 1.85784 1.21179 0.95588 0.99673 0.92648 1.21882 0.95148 0.99967 0.98063 1.21072 0.96346 0.94426 0.86635 1.44317 1.02451 1.70568 1.16244 1.19484 0.97506 1.35786 0.86693 0.92050 1.25728 0.99327 1.00315 0.98997 1.70170 1.26003 1.42412 1.19297 0.85359 0.77589 0.78937 0.79072 1.20973 1.21809 1.19954 1.20564 0.82920 0.95848 0.95418 1.22076 1.00055 0.98741 0.95370 0.91495 0.93446 0.91008 0.74832 0.85836 0.86201 0.92996 0.92651 0.88838 0.89099 0.93445 0.93246 0.74695 0.75337 0.74843 0.90112 0.94259 0.89640 0.96082 0.93344 0.94134 0.98080 0.93305 0.90766 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.13 71.98 0.66 -3.02 16 2 C 0.16 3.94 2.16 44.99 0.10 4.04 16 3 H 0.06 1.80 7.58 -2.38 -0.02 1.78 16 4 N -0.71 -13.56 4.36 -442.54 -1.93 -15.49 16 5 C 0.50 10.57 7.79 87.66 0.68 11.25 16 6 O -0.59 -18.69 15.65 -3.05 -0.05 -18.74 16 7 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 8 C -0.10 -1.33 4.50 30.59 0.14 -1.19 16 9 C -0.11 -0.75 5.33 30.59 0.16 -0.59 16 10 C 0.13 1.78 5.67 86.38 0.49 2.27 16 11 N -0.73 -7.25 5.56 -478.56 -2.66 -9.91 16 12 C 0.69 11.21 8.84 179.05 1.58 12.79 16 13 N -0.85 -5.23 8.88 -184.75 -1.64 -6.87 16 14 O -0.65 -18.56 17.18 -3.97 -0.07 -18.63 16 15 C -0.07 -2.06 1.79 -10.76 -0.02 -2.08 16 16 C -0.11 -3.44 5.22 30.68 0.16 -3.28 16 17 C 0.14 5.54 6.52 86.36 0.56 6.10 16 18 N -0.61 -30.41 2.99 -699.11 -2.09 -32.50 16 19 C -0.26 -14.66 9.58 84.03 0.81 -13.86 16 20 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 21 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 22 N -0.93 -55.05 11.19 21.65 0.24 -54.80 16 23 Si 0.96 45.21 29.59 68.60 2.03 47.24 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 27 C 0.18 8.42 5.30 86.36 0.46 8.88 16 28 C -0.12 -4.44 5.04 30.67 0.15 -4.28 16 29 H 0.07 1.62 6.40 -2.39 -0.02 1.61 16 30 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.41 5.26 8.39 -92.71 -0.78 4.48 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 37 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16 38 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 0.75 8.49 -92.70 -0.79 -0.03 16 42 H 0.42 -0.63 8.84 -92.71 -0.82 -1.45 16 43 H 0.42 2.22 8.93 -92.71 -0.83 1.40 16 44 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 2.00 7.41 -2.39 -0.02 1.98 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 49 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 50 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.05 2.66 6.07 -2.38 -0.01 2.65 16 52 H 0.07 2.36 6.36 -2.39 -0.02 2.34 16 53 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -84.11 418.84 -1.92 -86.04 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -2.28 Total: 10.10 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.52 Total: 13.56 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -8.08 Total: -119.58 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.12 Total: -37.37 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -84.11 -1.92 -86.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717979766.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.621 kcal (2) G-P(sol) polarization free energy of solvation -84.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds