Wall clock time and date at job start Sat Apr 11 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45145 * 2 1 4 4 C 1.53039 * 109.46033 * 240.02292 * 2 1 3 5 5 H 1.09001 * 109.53220 * 60.84949 * 4 2 1 6 6 N 1.46493 * 109.50638 * 300.74447 * 4 2 1 7 7 C 1.34782 * 119.99665 * 155.19334 * 6 4 2 8 8 O 1.21273 * 120.00095 * 0.02562 * 7 6 4 9 9 C 1.50707 * 119.99700 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47020 * 180.02562 * 9 7 6 11 11 N 1.46894 * 109.47353 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99734 * 293.95499 * 11 10 9 13 13 C 1.46902 * 111.00430 * 170.00013 * 11 10 9 14 14 C 1.53123 * 109.27573 * 180.80237 * 4 2 1 15 15 C 1.53120 * 109.15848 * 57.65746 * 14 4 2 16 16 C 1.53039 * 109.28117 * 302.34603 * 15 14 4 17 17 N 1.46844 * 109.52146 * 59.17583 * 16 15 14 18 18 C 1.46904 * 110.99546 * 174.16005 * 17 16 15 19 19 C 1.50697 * 109.47312 * 284.43097 * 18 17 16 20 20 O 1.21287 * 120.00186 * 0.02562 * 19 18 17 21 21 N 1.34783 * 119.99899 * 179.97438 * 19 18 17 22 22 C 1.37090 * 119.99665 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00347 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99892 * 179.97438 * 22 21 19 25 25 N 1.31416 * 120.00001 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00500 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47225 * 59.99745 * 26 24 22 28 28 H 1.48494 * 109.47626 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.46839 * 300.00109 * 26 24 22 30 30 H 1.09002 * 109.47391 * 187.75832 * 1 2 3 31 31 H 1.09000 * 109.46891 * 307.75169 * 1 2 3 32 32 H 1.08996 * 109.47032 * 67.75794 * 1 2 3 33 33 H 0.96997 * 120.00240 * 335.20452 * 6 4 2 34 34 H 1.09005 * 109.46568 * 60.00749 * 9 7 6 35 35 H 1.09001 * 109.47195 * 300.00396 * 9 7 6 36 36 H 1.09004 * 109.47096 * 60.00198 * 10 9 7 37 37 H 1.09005 * 109.47155 * 300.00832 * 10 9 7 38 38 H 1.08997 * 109.47150 * 59.99931 * 12 11 10 39 39 H 1.08997 * 109.46848 * 299.99812 * 12 11 10 40 40 H 1.09000 * 109.46944 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47172 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.46737 * 300.00051 * 13 11 10 43 43 H 1.09001 * 109.46553 * 59.99828 * 13 11 10 44 44 H 1.08993 * 109.52289 * 177.56164 * 14 4 2 45 45 H 1.08998 * 109.52741 * 297.69000 * 14 4 2 46 46 H 1.09003 * 109.50166 * 62.28423 * 15 14 4 47 47 H 1.09000 * 109.50322 * 182.39768 * 15 14 4 48 48 H 1.08999 * 109.46287 * 179.19711 * 16 15 14 49 49 H 1.08999 * 109.45683 * 299.15960 * 16 15 14 50 50 H 1.08996 * 109.47312 * 44.43583 * 18 17 16 51 51 H 1.09002 * 109.46801 * 164.43343 * 18 17 16 52 52 H 0.96996 * 119.99851 * 0.02562 * 21 19 18 53 53 H 0.97000 * 120.00540 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 1 1.6895 -0.1988 -2.1403 6 7 1.5373 -2.0969 -1.2602 7 6 1.4125 -2.7601 -2.4269 8 8 1.7167 -2.2178 -3.4681 9 6 0.8949 -4.1754 -2.4375 10 6 0.8521 -4.6920 -3.8770 11 7 0.3470 -6.0713 -3.8875 12 6 1.2861 -6.9809 -3.2175 13 6 0.0676 -6.5194 -5.2584 14 6 3.5710 -0.7361 -1.2356 15 6 4.0548 -1.4188 0.0468 16 6 3.4864 -0.6777 1.2591 17 7 2.0193 -0.6917 1.1994 18 6 1.4373 -0.1106 2.4166 19 6 1.5513 -1.0983 3.5490 20 8 2.0671 -2.1798 3.3608 21 7 1.0811 -0.7795 4.7712 22 6 1.1853 -1.6779 5.8015 23 1 1.6446 -2.6409 5.6339 24 6 0.7010 -1.3491 7.0617 25 7 0.1426 -0.1771 7.2658 26 14 0.8436 -2.5728 8.4658 27 1 2.2749 -2.8895 8.7030 28 1 0.2557 -1.9852 9.6963 29 1 0.1130 -3.8170 8.1141 30 1 -0.3634 -1.0183 0.1387 31 1 -0.3633 0.6292 0.8126 32 1 -0.3633 0.3890 -0.9512 33 1 1.2941 -2.5307 -0.4274 34 1 -0.1088 -4.1983 -2.0130 35 1 1.5550 -4.8082 -1.8442 36 1 1.8560 -4.6691 -4.3012 37 1 0.1923 -4.0592 -4.4707 38 1 1.4212 -6.6660 -2.1828 39 1 2.2461 -6.9563 -3.7331 40 1 0.8875 -7.9952 -3.2391 41 1 -0.3045 -7.5436 -5.2371 42 1 -0.6830 -5.8689 -5.7072 43 1 0.9836 -6.4781 -5.8478 44 1 3.9379 -1.2863 -2.1019 45 1 3.9457 0.2869 -1.2684 46 1 3.7124 -2.4536 0.0595 47 1 5.1439 -1.3948 0.0832 48 1 3.8175 -1.1699 2.1736 49 1 3.8404 0.3532 1.2532 50 1 1.9734 0.8025 2.6755 51 1 0.3868 0.1220 2.2417 52 1 0.6690 0.0855 4.9218 53 1 -0.1951 0.0527 8.1456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734460753.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:18 Heat of formation + Delta-G solvation = -88.508720 kcal Electronic energy + Delta-G solvation = -30947.684950 eV Core-core repulsion = 26853.177417 eV Total energy + Delta-G solvation = -4094.507534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47818 -40.31484 -39.28087 -38.20508 -36.00708 -35.37432 -34.18355 -33.16937 -32.83497 -31.56772 -28.97466 -28.48273 -27.84425 -26.43290 -26.01304 -24.03970 -22.65414 -22.36816 -21.19192 -20.91850 -20.13697 -19.78510 -18.32158 -17.82731 -16.99994 -16.84167 -16.67300 -16.39893 -16.35972 -15.99632 -15.88535 -15.62993 -15.55170 -15.20532 -15.08327 -14.83994 -14.35664 -14.11391 -14.01994 -13.83473 -13.58610 -13.40310 -13.28491 -13.05942 -12.86951 -12.84919 -12.76988 -12.70362 -12.60462 -12.43030 -12.38829 -12.25335 -12.11591 -11.90910 -11.80279 -11.59565 -11.38912 -11.22866 -10.81708 -10.23546 -9.94581 -9.93231 -9.36495 -9.16480 -8.41781 -5.89482 1.41749 1.43384 1.53613 1.70913 2.14072 2.22740 2.31279 2.72899 3.09384 3.25449 3.47465 3.64281 3.83705 3.87968 3.99642 4.01421 4.10990 4.16237 4.29557 4.33033 4.37759 4.42450 4.45168 4.47946 4.52728 4.58109 4.61997 4.65107 4.70278 4.74813 4.82274 4.88022 4.93824 4.96519 4.98624 5.00722 5.01542 5.03416 5.07158 5.24389 5.29260 5.39645 5.45176 5.62644 5.93269 6.00373 6.05671 6.13460 6.24952 6.66639 6.67543 7.19183 7.32314 7.64494 8.20552 8.75412 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.002534 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.425711 B =11048.900956 C =12447.476851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 H 0.068 0.932 4 C 0.160 3.840 5 H 0.090 0.910 6 N -0.703 5.703 7 C 0.516 3.484 8 O -0.585 6.585 9 C -0.133 4.133 10 C 0.079 3.921 11 N -0.559 5.559 12 C 0.017 3.983 13 C 0.024 3.976 14 C -0.125 4.125 15 C -0.103 4.103 16 C 0.062 3.938 17 N -0.520 5.520 18 C 0.052 3.948 19 C 0.446 3.554 20 O -0.610 6.610 21 N -0.579 5.579 22 C -0.327 4.327 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.273 1.273 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.040 0.960 50 H 0.065 0.935 51 H 0.115 0.885 52 H 0.394 0.606 53 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -2.601 -20.335 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 H 0.086 0.914 4 C 0.054 3.946 5 H 0.108 0.892 6 N -0.354 5.354 7 C 0.303 3.697 8 O -0.466 6.466 9 C -0.173 4.173 10 C -0.049 4.049 11 N -0.283 5.283 12 C -0.131 4.131 13 C -0.124 4.124 14 C -0.163 4.163 15 C -0.141 4.141 16 C -0.065 4.065 17 N -0.246 5.246 18 C -0.079 4.079 19 C 0.233 3.767 20 O -0.495 6.495 21 N -0.217 5.217 22 C -0.456 4.456 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.198 1.198 29 H -0.197 1.197 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.083 0.917 51 H 0.133 0.867 52 H 0.228 0.772 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.904 -3.346 -20.788 21.075 hybrid contribution 0.858 0.557 1.124 1.520 sum 1.762 -2.788 -19.665 19.939 Atomic orbital electron populations 1.21923 0.93123 1.02682 1.02698 1.21956 0.96489 0.96051 0.88698 0.91426 1.20969 0.93593 0.82747 0.97277 0.89244 1.46004 1.65192 1.14852 1.09353 1.20890 0.76886 0.88766 0.83126 1.90652 1.52466 1.70435 1.33086 1.21601 1.04433 0.91978 0.99270 1.21684 0.98514 0.89268 0.95434 1.61994 1.45503 1.02122 1.18676 1.22520 0.93747 0.97313 0.99540 1.22421 1.00297 1.02035 0.87647 1.21931 0.95199 1.01773 0.97427 1.21431 1.00036 0.99528 0.93129 1.22043 0.86774 0.98689 0.99040 1.61374 1.07557 1.55123 1.00527 1.21829 1.02719 0.94380 0.88962 1.20786 0.82492 0.89328 0.84070 1.90479 1.49072 1.26304 1.83674 1.41943 1.54040 1.17526 1.08210 1.19577 1.38088 0.98734 0.89241 0.90328 1.25977 0.96201 0.98744 1.00496 1.69665 1.40134 1.21714 1.24883 0.85045 0.78576 0.77982 0.77092 1.19858 1.19783 1.19728 0.92415 0.91578 0.90654 0.75117 0.87114 0.88002 0.95349 0.90869 0.90911 0.95650 0.90210 0.90075 0.91030 0.95651 0.92214 0.89873 0.92568 0.90752 0.92856 0.94185 0.91661 0.86719 0.77221 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.31 71.98 0.60 -2.32 16 2 C 0.08 1.64 2.15 44.94 0.10 1.74 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.16 3.46 2.25 45.05 0.10 3.56 16 5 H 0.09 1.99 7.58 -2.39 -0.02 1.97 16 6 N -0.70 -15.85 3.82 -442.28 -1.69 -17.54 16 7 C 0.52 12.24 7.80 87.66 0.68 12.93 16 8 O -0.59 -17.40 15.65 -3.01 -0.05 -17.45 16 9 C -0.13 -2.55 5.62 29.85 0.17 -2.38 16 10 C 0.08 1.58 4.25 86.30 0.37 1.95 16 11 N -0.56 -9.96 5.02 -948.86 -4.76 -14.72 16 12 C 0.02 0.26 9.32 127.69 1.19 1.45 16 13 C 0.02 0.35 9.57 127.69 1.22 1.57 16 14 C -0.12 -2.67 5.67 30.68 0.17 -2.50 16 15 C -0.10 -2.52 5.93 30.65 0.18 -2.34 16 16 C 0.06 1.77 5.11 86.33 0.44 2.21 16 17 N -0.52 -14.64 3.53 -875.65 -3.09 -17.73 16 18 C 0.05 1.65 5.31 85.56 0.45 2.10 16 19 C 0.45 20.04 7.49 87.66 0.66 20.70 16 20 O -0.61 -31.72 14.74 -3.05 -0.04 -31.77 16 21 N -0.58 -28.73 5.29 -306.99 -1.62 -30.35 16 22 C -0.33 -18.11 9.68 84.04 0.81 -17.29 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 25 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 26 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 29 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 30 H 0.06 1.29 7.66 -2.39 -0.02 1.27 16 31 H 0.07 1.27 6.38 -2.39 -0.02 1.25 16 32 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.41 9.86 7.94 -92.71 -0.74 9.12 16 34 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.10 1.80 6.55 -2.39 -0.02 1.78 16 36 H 0.03 0.63 8.08 -2.38 -0.02 0.61 16 37 H 0.07 1.56 8.02 -2.38 -0.02 1.54 16 38 H 0.07 1.11 6.47 -2.39 -0.02 1.10 16 39 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 41 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 42 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 43 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.55 7.73 -2.39 -0.02 1.53 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.05 1.94 6.69 -2.39 -0.02 1.92 16 49 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.07 1.89 8.00 -2.39 -0.02 1.87 16 51 H 0.12 3.20 5.42 -2.39 -0.01 3.19 16 52 H 0.39 18.69 7.90 -92.71 -0.73 17.96 16 53 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -66.75 413.44 -1.89 -68.65 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -0.56 Total: 44.30 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.61 Total: 21.06 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -10.88 Total: -129.30 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.09 Total: -49.22 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.75 -1.89 -68.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734460753.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.860 kcal (2) G-P(sol) polarization free energy of solvation -66.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds