Wall clock time and date at job start Sat Apr 11 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45835 * 2 1 4 4 C 1.53039 * 109.45906 * 240.02767 * 2 1 3 5 5 H 1.09000 * 109.50255 * 300.77875 * 4 2 1 6 6 N 1.46498 * 109.50733 * 60.86349 * 4 2 1 7 7 C 1.34776 * 119.99874 * 204.92386 * 6 4 2 8 8 O 1.21277 * 120.00197 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99869 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.47054 * 179.97438 * 9 7 6 11 11 N 1.46900 * 109.47049 * 179.97438 * 10 9 7 12 12 C 1.46907 * 110.99543 * 66.05311 * 11 10 9 13 13 C 1.46900 * 110.99734 * 189.99996 * 11 10 9 14 14 C 1.53119 * 109.30528 * 180.82294 * 4 2 1 15 15 C 1.53116 * 109.16081 * 57.59534 * 14 4 2 16 16 C 1.53041 * 109.31019 * 302.40161 * 15 14 4 17 17 N 1.46840 * 109.46280 * 119.96951 * 2 1 3 18 18 C 1.46898 * 111.00124 * 305.85404 * 17 2 1 19 19 C 1.50698 * 109.47346 * 295.97716 * 18 17 2 20 20 O 1.21291 * 119.99705 * 5.40514 * 19 18 17 21 21 N 1.34775 * 119.99978 * 185.40714 * 19 18 17 22 22 C 1.37102 * 119.99903 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99893 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00013 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99974 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99877 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 89.99927 * 26 24 22 28 28 H 1.48497 * 109.46822 * 209.99733 * 26 24 22 29 29 H 1.48493 * 109.47040 * 329.99887 * 26 24 22 30 30 H 1.08999 * 109.47011 * 175.63147 * 1 2 3 31 31 H 1.09005 * 109.46963 * 295.63383 * 1 2 3 32 32 H 1.09000 * 109.47366 * 55.62990 * 1 2 3 33 33 H 0.97002 * 120.00016 * 24.91552 * 6 4 2 34 34 H 1.08995 * 109.47144 * 299.99481 * 9 7 6 35 35 H 1.09005 * 109.47254 * 59.99831 * 9 7 6 36 36 H 1.08996 * 109.47371 * 300.00464 * 10 9 7 37 37 H 1.09005 * 109.46835 * 60.00056 * 10 9 7 38 38 H 1.08996 * 109.47165 * 59.99755 * 12 11 10 39 39 H 1.09001 * 109.46816 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.46827 * 299.99661 * 12 11 10 41 41 H 1.08997 * 109.47053 * 60.01059 * 13 11 10 42 42 H 1.09007 * 109.46774 * 180.02562 * 13 11 10 43 43 H 1.08993 * 109.47359 * 300.00151 * 13 11 10 44 44 H 1.09008 * 109.51719 * 177.53504 * 14 4 2 45 45 H 1.09000 * 109.52639 * 297.72181 * 14 4 2 46 46 H 1.09000 * 109.50701 * 182.44019 * 15 14 4 47 47 H 1.09002 * 109.47335 * 62.34065 * 15 14 4 48 48 H 1.09003 * 109.46004 * 299.14135 * 16 15 14 49 49 H 1.09004 * 109.46114 * 179.17752 * 16 15 14 50 50 H 1.08997 * 109.46922 * 55.97786 * 18 17 2 51 51 H 1.09008 * 109.46929 * 175.97866 * 18 17 2 52 52 H 0.96994 * 120.00250 * 0.02562 * 21 19 18 53 53 H 0.96999 * 120.00171 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 1.6653 -1.7445 -1.2580 6 7 1.5689 -0.0184 -2.4462 7 6 1.4418 -0.6830 -3.6118 8 8 1.7178 -1.8625 -3.6705 9 6 0.9568 0.0396 -4.8421 10 6 0.9042 -0.9364 -6.0192 11 7 0.4308 -0.2322 -7.2184 12 6 1.4007 0.7834 -7.6496 13 6 0.1412 -1.1782 -8.3043 14 6 3.5709 -0.7368 -1.2361 15 6 4.0548 -1.4187 0.0466 16 6 3.4865 -0.6775 1.2590 17 7 2.0193 -0.6916 1.1994 18 6 1.4373 -0.1104 2.4165 19 6 1.8976 1.3173 2.5611 20 8 2.5568 1.8338 1.6837 21 7 1.5768 2.0202 3.6654 22 6 1.9961 3.3189 3.7972 23 1 2.5830 3.7788 3.0159 24 6 1.6649 4.0437 4.9355 25 7 2.0663 5.2886 5.0616 26 14 0.6491 3.2484 6.2865 27 1 1.5536 2.5962 7.2671 28 1 -0.1599 4.2868 6.9738 29 1 -0.2539 2.2301 5.6926 30 1 -0.3633 -1.0247 -0.0783 31 1 -0.3633 0.4446 0.9266 32 1 -0.3634 0.5801 -0.8482 33 1 1.3484 0.9251 -2.3993 34 1 -0.0395 0.4415 -4.6583 35 1 1.6401 0.8556 -5.0774 36 1 1.9006 -1.3382 -6.2029 37 1 0.2210 -1.7526 -5.7842 38 1 2.3519 0.3032 -7.8789 39 1 1.0252 1.2899 -8.5388 40 1 1.5442 1.5110 -6.8509 41 1 -0.6310 -1.8765 -7.9816 42 1 -0.2070 -0.6304 -9.1801 43 1 1.0468 -1.7293 -8.5573 44 1 3.9372 -1.2876 -2.1026 45 1 3.9462 0.2860 -1.2682 46 1 5.1439 -1.3946 0.0831 47 1 3.7125 -2.4535 0.0594 48 1 3.8404 0.3534 1.2531 49 1 3.8176 -1.1697 2.1735 50 1 0.3499 -0.1363 2.3474 51 1 1.7601 -0.6858 3.2842 52 1 1.0500 1.6070 4.3673 53 1 1.8354 5.7945 5.8563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734460755.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:21 Heat of formation + Delta-G solvation = -84.396353 kcal Electronic energy + Delta-G solvation = -30901.806012 eV Core-core repulsion = 26807.476804 eV Total energy + Delta-G solvation = -4094.329208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61674 -40.67712 -39.11242 -38.21982 -36.20175 -35.53217 -34.29195 -33.74428 -32.81297 -31.54790 -29.03974 -28.48239 -27.83763 -26.36419 -25.98128 -23.87522 -22.56990 -22.20897 -21.35177 -21.29673 -20.92287 -19.90951 -18.30930 -17.70855 -17.40154 -16.94236 -16.79288 -16.63734 -16.25371 -15.97832 -15.83885 -15.68312 -15.50238 -15.23757 -15.07748 -14.77573 -14.65880 -14.39498 -14.08866 -13.99423 -13.68284 -13.29538 -13.22917 -13.13552 -12.96037 -12.84803 -12.76613 -12.61036 -12.58362 -12.42165 -12.40829 -12.01458 -12.01048 -11.91285 -11.81492 -11.75939 -11.41518 -11.22125 -11.00772 -10.85119 -10.21049 -10.03317 -9.37719 -9.01694 -8.42128 -6.01838 1.30287 1.34551 1.43692 1.64728 1.92000 2.06610 2.22090 2.93835 2.97156 3.12104 3.15262 3.67428 3.83186 3.83553 3.96278 4.03007 4.11660 4.14211 4.23431 4.29119 4.40143 4.43955 4.47744 4.49701 4.56797 4.59854 4.65297 4.69331 4.71955 4.76986 4.81479 4.88371 4.92175 4.96012 4.98768 5.01119 5.04989 5.06852 5.14868 5.19525 5.29091 5.42064 5.49633 5.53268 5.91944 5.98869 6.02543 6.04797 6.10597 6.55029 6.57972 6.88336 7.24732 7.39487 7.94737 8.75093 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.002248 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.033770 B =12452.930059 C =13148.495442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 H 0.056 0.944 4 C 0.167 3.833 5 H 0.081 0.919 6 N -0.715 5.715 7 C 0.517 3.483 8 O -0.582 6.582 9 C -0.129 4.129 10 C 0.076 3.924 11 N -0.556 5.556 12 C 0.016 3.984 13 C 0.023 3.977 14 C -0.124 4.124 15 C -0.102 4.102 16 C 0.037 3.963 17 N -0.497 5.497 18 C 0.041 3.959 19 C 0.421 3.579 20 O -0.608 6.608 21 N -0.589 5.589 22 C -0.323 4.323 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.961 3.039 27 H -0.259 1.259 28 H -0.277 1.277 29 H -0.230 1.230 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.037 0.963 49 H 0.079 0.921 50 H 0.123 0.877 51 H 0.120 0.880 52 H 0.388 0.612 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -14.448 -17.327 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.074 0.926 4 C 0.062 3.938 5 H 0.099 0.901 6 N -0.366 5.366 7 C 0.305 3.695 8 O -0.462 6.462 9 C -0.169 4.169 10 C -0.053 4.053 11 N -0.280 5.280 12 C -0.132 4.132 13 C -0.125 4.125 14 C -0.163 4.163 15 C -0.141 4.141 16 C -0.091 4.091 17 N -0.219 5.219 18 C -0.090 4.090 19 C 0.208 3.792 20 O -0.494 6.494 21 N -0.230 5.230 22 C -0.453 4.453 23 H 0.075 0.925 24 C -0.214 4.214 25 N -0.574 5.574 26 Si 0.781 3.219 27 H -0.184 1.184 28 H -0.203 1.203 29 H -0.153 1.153 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.055 0.945 49 H 0.097 0.903 50 H 0.141 0.859 51 H 0.138 0.862 52 H 0.224 0.776 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.444 -15.015 -17.771 23.894 hybrid contribution 0.842 1.281 0.938 1.797 sum -4.602 -13.734 -16.833 22.207 Atomic orbital electron populations 1.21889 0.93224 1.02630 1.02155 1.21950 0.96218 0.97212 0.89400 0.92574 1.20713 0.93355 0.96463 0.83317 0.90099 1.46007 1.67296 1.14291 1.08988 1.21047 0.76363 0.86983 0.85108 1.90679 1.52051 1.17700 1.85797 1.21613 1.05042 0.99459 0.90801 1.21709 0.98803 0.95428 0.89317 1.62014 1.44628 1.15771 1.05622 1.22542 0.93272 0.95312 1.02087 1.22427 1.00268 0.95668 0.94134 1.21884 0.95592 1.00416 0.98418 1.21452 1.00363 0.99709 0.92542 1.22322 0.87489 0.99989 0.99320 1.62438 1.07691 1.51046 1.00767 1.22388 1.02691 0.88572 0.95392 1.22218 0.83813 0.90642 0.82485 1.90457 1.43970 1.72891 1.42060 1.42261 1.49492 1.11817 1.19405 1.18985 1.32641 0.88387 1.05255 0.92538 1.26100 0.98898 0.95910 1.00516 1.69800 1.46898 1.10571 1.30150 0.85415 0.79017 0.79229 0.78222 1.18385 1.20258 1.15316 0.91299 0.92619 0.91389 0.75459 0.86371 0.87244 0.95457 0.91010 0.95825 0.90172 0.90484 0.91108 0.89969 0.95767 0.92012 0.93153 0.90423 0.90552 0.94501 0.90250 0.85924 0.86219 0.77636 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.71 71.98 0.63 -2.83 16 2 C 0.06 1.76 1.62 44.94 0.07 1.83 16 3 H 0.06 2.06 5.65 -2.39 -0.01 2.05 16 4 C 0.17 4.40 2.05 45.04 0.09 4.50 16 5 H 0.08 2.35 7.58 -2.39 -0.02 2.34 16 6 N -0.71 -15.89 4.47 -442.29 -1.98 -17.87 16 7 C 0.52 11.85 7.80 87.66 0.68 12.54 16 8 O -0.58 -17.77 15.65 -3.02 -0.05 -17.82 16 9 C -0.13 -2.08 5.62 29.85 0.17 -1.91 16 10 C 0.08 1.38 4.25 86.30 0.37 1.74 16 11 N -0.56 -8.64 5.02 -948.84 -4.76 -13.40 16 12 C 0.02 0.20 9.32 127.69 1.19 1.39 16 13 C 0.02 0.30 9.57 127.69 1.22 1.52 16 14 C -0.12 -3.38 5.58 30.67 0.17 -3.21 16 15 C -0.10 -2.63 6.09 30.65 0.19 -2.45 16 16 C 0.04 1.11 5.01 86.33 0.43 1.54 16 17 N -0.50 -14.34 4.69 -875.64 -4.11 -18.45 16 18 C 0.04 1.20 5.43 85.56 0.46 1.66 16 19 C 0.42 17.45 7.18 87.66 0.63 18.08 16 20 O -0.61 -30.03 11.22 -3.06 -0.03 -30.06 16 21 N -0.59 -26.27 5.09 -306.98 -1.56 -27.84 16 22 C -0.32 -18.17 10.16 84.04 0.85 -17.32 16 23 H 0.06 3.80 7.39 -2.91 -0.02 3.77 16 24 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 25 N -0.93 -55.18 13.96 21.66 0.30 -54.88 16 26 Si 0.96 37.85 27.74 68.60 1.90 39.75 16 27 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 28 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.23 -7.56 6.52 99.48 0.65 -6.91 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.42 5.98 -2.38 -0.01 1.40 16 32 H 0.07 1.48 7.64 -2.39 -0.02 1.46 16 33 H 0.41 7.79 8.45 -92.71 -0.78 7.00 16 34 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.11 1.43 6.55 -2.38 -0.02 1.42 16 36 H 0.03 0.57 8.08 -2.39 -0.02 0.55 16 37 H 0.07 1.45 8.02 -2.38 -0.02 1.43 16 38 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 40 H 0.08 0.87 6.47 -2.39 -0.02 0.86 16 41 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 42 H 0.08 0.83 8.12 -2.38 -0.02 0.81 16 43 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.04 1.43 5.72 -2.39 -0.01 1.41 16 49 H 0.08 2.19 8.12 -2.38 -0.02 2.17 16 50 H 0.12 3.02 5.88 -2.39 -0.01 3.01 16 51 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 52 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 53 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.04 405.70 -3.12 -77.17 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -0.46 Total: 46.69 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.63 Total: 16.70 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -12.11 Total: -132.43 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.08 Total: -47.89 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.75 kcal Total: -74.04 -3.12 -77.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734460755.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.228 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds