Wall clock time and date at job start Sat Apr 11 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46743 * 2 1 4 4 C 1.53045 * 109.45265 * 119.97112 * 2 1 3 5 5 H 1.09001 * 109.50398 * 59.24828 * 4 2 1 6 6 N 1.46498 * 109.50393 * 299.13128 * 4 2 1 7 7 C 1.34775 * 120.00362 * 155.00032 * 6 4 2 8 8 O 1.21282 * 119.99885 * 359.97438 * 7 6 4 9 9 C 1.50699 * 120.00338 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47353 * 179.97438 * 9 7 6 11 11 N 1.46896 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00041 * 170.00249 * 11 10 9 13 13 C 1.46901 * 110.99945 * 293.95313 * 11 10 9 14 14 C 1.53116 * 109.27817 * 179.18621 * 4 2 1 15 15 C 1.53114 * 109.16563 * 302.34908 * 14 4 2 16 16 C 1.53036 * 109.27841 * 57.64765 * 15 14 4 17 17 N 1.46844 * 109.52751 * 300.82475 * 16 15 14 18 18 C 1.46902 * 110.99976 * 185.83533 * 17 16 15 19 19 C 1.50700 * 109.47451 * 301.27927 * 18 17 16 20 20 O 1.21291 * 119.99794 * 354.33111 * 19 18 17 21 21 N 1.34777 * 120.00136 * 174.32946 * 19 18 17 22 22 C 1.37089 * 119.99937 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00278 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00218 * 179.97438 * 22 21 19 25 25 N 1.31418 * 119.99575 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00416 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46702 * 60.00287 * 26 24 22 28 28 H 1.48498 * 109.47168 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47577 * 300.00460 * 26 24 22 30 30 H 1.09006 * 109.47602 * 173.50312 * 1 2 3 31 31 H 1.09005 * 109.47200 * 293.50136 * 1 2 3 32 32 H 1.08994 * 109.47225 * 53.50272 * 1 2 3 33 33 H 0.97004 * 119.99977 * 335.00085 * 6 4 2 34 34 H 1.09004 * 109.46817 * 299.99554 * 9 7 6 35 35 H 1.08995 * 109.47392 * 59.99627 * 9 7 6 36 36 H 1.08999 * 109.47262 * 299.99793 * 10 9 7 37 37 H 1.09009 * 109.46894 * 59.99577 * 10 9 7 38 38 H 1.08999 * 109.47989 * 59.99674 * 12 11 10 39 39 H 1.09000 * 109.47310 * 180.02562 * 12 11 10 40 40 H 1.09006 * 109.46900 * 299.99981 * 12 11 10 41 41 H 1.08999 * 109.47213 * 59.99564 * 13 11 10 42 42 H 1.08995 * 109.47053 * 180.02562 * 13 11 10 43 43 H 1.09005 * 109.47165 * 299.99839 * 13 11 10 44 44 H 1.09002 * 109.52363 * 182.43495 * 14 4 2 45 45 H 1.09007 * 109.57029 * 62.28728 * 14 4 2 46 46 H 1.09001 * 109.49688 * 297.71223 * 15 14 4 47 47 H 1.08991 * 109.50682 * 177.59575 * 15 14 4 48 48 H 1.09001 * 109.46198 * 180.80934 * 16 15 14 49 49 H 1.09007 * 109.45862 * 60.84557 * 16 15 14 50 50 H 1.09000 * 109.46710 * 61.28380 * 18 17 16 51 51 H 1.09002 * 109.46853 * 181.27472 * 18 17 16 52 52 H 0.97002 * 119.99310 * 0.02562 * 21 19 18 53 53 H 0.96994 * 119.99615 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2501 5 1 1.6655 -1.7447 1.2578 6 7 1.5686 -0.0182 2.4462 7 6 1.4399 -0.6830 3.6115 8 8 1.7135 -1.8631 3.6699 9 6 0.9548 0.0398 4.8417 10 6 0.8990 -0.9368 6.0182 11 7 0.4268 -0.2321 7.2175 12 6 0.1341 -1.1779 8.3027 13 6 1.3989 0.7808 7.6499 14 6 3.5706 -0.7364 1.2359 15 6 4.0545 -1.4192 -0.0463 16 6 3.4864 -0.6782 -1.2588 17 7 2.0192 -0.6920 -1.1992 18 6 1.4375 -0.1107 -2.4165 19 6 1.9266 1.3052 -2.5805 20 8 2.6015 1.8180 -1.7128 21 7 1.6141 2.0018 -3.6911 22 6 2.0586 3.2901 -3.8400 23 1 2.6596 3.7467 -3.0674 24 6 1.7370 4.0081 -4.9853 25 7 1.0061 3.4524 -5.9256 26 14 2.3420 5.7637 -5.1879 27 1 3.8267 5.7821 -5.1581 28 1 1.8667 6.3043 -6.4867 29 1 1.8144 6.6001 -4.0801 30 1 -0.3634 -1.0211 -0.1163 31 1 -0.3634 0.4098 0.9425 32 1 -0.3633 0.6112 -0.8261 33 1 1.3494 0.9256 2.3994 34 1 1.6391 0.8548 5.0777 35 1 -0.0408 0.4432 4.6573 36 1 0.2146 -1.7515 5.7820 37 1 1.8946 -1.3405 6.2027 38 1 1.0381 -1.7316 8.5560 39 1 -0.2140 -0.6299 9.1783 40 1 -0.6397 -1.8741 7.9790 41 1 1.5448 1.5085 6.8517 42 1 1.0247 1.2870 8.5397 43 1 2.3489 0.2980 7.8795 44 1 3.9375 -1.2866 2.1024 45 1 3.9465 0.2863 1.2681 46 1 3.7120 -2.4540 -0.0589 47 1 5.1436 -1.3954 -0.0826 48 1 3.8174 -1.1705 -2.1732 49 1 3.8405 0.3528 -1.2529 50 1 1.7390 -0.7018 -3.2813 51 1 0.3504 -0.1127 -2.3364 52 1 1.0741 1.5918 -4.3848 53 1 0.7813 3.9537 -6.7249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734460756.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:24 Heat of formation + Delta-G solvation = -89.799532 kcal Electronic energy + Delta-G solvation = -30848.157114 eV Core-core repulsion = 26753.593606 eV Total energy + Delta-G solvation = -4094.563507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57135 -40.61758 -39.03992 -38.20647 -36.17212 -35.49619 -34.26961 -33.27692 -32.79873 -31.52199 -28.90573 -28.47667 -27.81250 -26.44965 -26.02459 -23.91394 -22.58830 -22.20865 -21.33421 -21.20404 -20.61906 -19.71524 -18.30526 -17.68977 -17.40461 -16.93547 -16.58165 -16.57490 -16.25306 -15.96848 -15.87240 -15.68000 -15.59103 -15.42035 -15.05315 -14.71624 -14.59606 -14.24954 -14.02146 -13.67104 -13.50477 -13.28838 -13.21096 -13.08686 -12.92678 -12.85453 -12.75868 -12.61098 -12.57824 -12.44244 -12.40872 -12.16316 -11.99081 -11.90677 -11.81663 -11.75834 -11.38753 -11.22328 -10.93716 -10.84487 -10.02820 -9.98039 -9.37161 -8.99412 -8.45346 -5.94989 1.37437 1.40576 1.50724 1.65488 2.01763 2.07537 2.28593 2.95761 3.13556 3.20684 3.26527 3.69858 3.83919 3.84376 3.97354 4.03968 4.13489 4.14947 4.29651 4.39630 4.41073 4.45609 4.48400 4.50900 4.59065 4.61470 4.65966 4.69308 4.71912 4.78875 4.82257 4.89220 4.93070 4.96703 4.99998 5.01473 5.05821 5.07426 5.15794 5.18943 5.29575 5.38916 5.44390 5.51546 5.91731 5.99288 6.05404 6.07088 6.14342 6.56072 6.59590 7.12085 7.25798 7.56210 8.10289 8.69599 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.002245 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.436996 B =12468.660176 C =13358.137451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 H 0.057 0.943 4 C 0.167 3.833 5 H 0.079 0.921 6 N -0.714 5.714 7 C 0.517 3.483 8 O -0.583 6.583 9 C -0.129 4.129 10 C 0.076 3.924 11 N -0.556 5.556 12 C 0.023 3.977 13 C 0.016 3.984 14 C -0.122 4.122 15 C -0.102 4.102 16 C 0.036 3.964 17 N -0.498 5.498 18 C 0.046 3.954 19 C 0.411 3.589 20 O -0.617 6.617 21 N -0.570 5.570 22 C -0.330 4.330 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.918 5.918 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.273 1.273 29 H -0.271 1.271 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.410 0.590 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.043 0.957 50 H 0.107 0.893 51 H 0.113 0.887 52 H 0.395 0.605 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -7.685 20.251 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 H 0.074 0.926 4 C 0.061 3.939 5 H 0.097 0.903 6 N -0.365 5.365 7 C 0.305 3.695 8 O -0.463 6.463 9 C -0.169 4.169 10 C -0.053 4.053 11 N -0.280 5.280 12 C -0.125 4.125 13 C -0.132 4.132 14 C -0.161 4.161 15 C -0.141 4.141 16 C -0.092 4.092 17 N -0.221 5.221 18 C -0.085 4.085 19 C 0.198 3.802 20 O -0.506 6.506 21 N -0.206 5.206 22 C -0.460 4.460 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.559 5.559 26 Si 0.814 3.186 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.246 0.754 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.125 0.875 51 H 0.130 0.870 52 H 0.229 0.771 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.804 -8.372 20.593 22.303 hybrid contribution 1.039 1.548 -0.827 2.040 sum -0.764 -6.823 19.766 20.924 Atomic orbital electron populations 1.21861 0.93476 1.02426 1.02076 1.21900 0.96005 0.97141 0.89352 0.92553 1.20689 0.93458 0.96423 0.83305 0.90288 1.45998 1.67309 1.14271 1.08939 1.21067 0.76358 0.86999 0.85120 1.90683 1.52092 1.17705 1.85794 1.21609 1.05064 0.99449 0.90728 1.21710 0.98803 0.95425 0.89347 1.62005 1.44529 1.15895 1.05604 1.22426 1.00248 0.95667 0.94162 1.22543 0.93228 0.95343 1.02087 1.21866 0.95438 1.00547 0.98266 1.21452 1.00378 0.99598 0.92624 1.22328 0.87514 1.00295 0.99029 1.62463 1.07766 1.51142 1.00755 1.22195 1.01861 0.89582 0.94887 1.22030 0.84764 0.90419 0.82944 1.90399 1.44401 1.72610 1.43142 1.42123 1.47018 1.12947 1.18516 1.19591 1.31636 0.90330 1.04461 0.90278 1.26019 0.96715 1.03795 0.94787 1.69667 1.37680 1.39538 1.09028 0.85034 0.78479 0.77358 0.77760 1.19885 1.19719 1.19663 0.91382 0.90913 0.93404 0.75373 0.87105 0.86364 0.91086 0.95456 0.95770 0.89950 0.91166 0.90405 0.90179 0.95841 0.91951 0.92836 0.90830 0.90312 0.90979 0.93887 0.87497 0.86952 0.77123 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.48 71.98 0.61 -3.08 16 2 C 0.06 1.95 1.64 44.94 0.07 2.02 16 3 H 0.06 2.09 5.76 -2.39 -0.01 2.08 16 4 C 0.17 4.51 2.05 45.05 0.09 4.60 16 5 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 6 N -0.71 -15.90 4.30 -442.28 -1.90 -17.80 16 7 C 0.52 11.86 7.80 87.66 0.68 12.55 16 8 O -0.58 -17.95 15.64 -3.04 -0.05 -18.00 16 9 C -0.13 -2.05 5.62 29.85 0.17 -1.88 16 10 C 0.08 1.37 4.25 86.30 0.37 1.73 16 11 N -0.56 -8.56 5.02 -948.85 -4.76 -13.32 16 12 C 0.02 0.30 9.57 127.69 1.22 1.52 16 13 C 0.02 0.20 9.32 127.69 1.19 1.39 16 14 C -0.12 -3.36 5.58 30.67 0.17 -3.19 16 15 C -0.10 -2.73 6.09 30.64 0.19 -2.55 16 16 C 0.04 1.16 4.98 86.33 0.43 1.59 16 17 N -0.50 -15.59 4.69 -875.63 -4.11 -19.69 16 18 C 0.05 1.54 5.47 85.56 0.47 2.01 16 19 C 0.41 18.13 7.18 87.66 0.63 18.76 16 20 O -0.62 -30.55 11.22 -3.07 -0.03 -30.59 16 21 N -0.57 -27.91 5.29 -306.99 -1.62 -29.54 16 22 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 23 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -48.60 13.05 21.67 0.28 -48.31 16 26 Si 0.99 41.98 29.55 68.60 2.03 44.01 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 30 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.63 7.33 -2.38 -0.02 1.62 16 32 H 0.05 1.36 6.60 -2.39 -0.02 1.35 16 33 H 0.41 7.65 8.45 -92.71 -0.78 6.87 16 34 H 0.11 1.39 6.55 -2.38 -0.02 1.38 16 35 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.44 8.02 -2.39 -0.02 1.42 16 37 H 0.03 0.57 8.08 -2.38 -0.02 0.55 16 38 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 40 H 0.07 0.89 8.12 -2.38 -0.02 0.87 16 41 H 0.08 0.84 6.47 -2.39 -0.02 0.83 16 42 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 43 H 0.02 0.30 8.14 -2.38 -0.02 0.28 16 44 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 49 H 0.04 1.71 5.61 -2.38 -0.01 1.70 16 50 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 51 H 0.11 3.36 6.04 -2.39 -0.01 3.34 16 52 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 53 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -66.11 408.93 -3.20 -69.31 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: -0.60 Total: 45.91 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 7.57 Total: 18.02 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -12.11 Total: -128.66 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.08 Total: -48.59 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -66.11 -3.20 -69.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734460756.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.489 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds