Wall clock time and date at job start Sat Apr 11 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.45038 * 2 1 4 4 C 1.53027 * 109.46483 * 119.97634 * 2 1 3 5 5 H 1.09003 * 109.54009 * 299.15610 * 4 2 1 6 6 N 1.46500 * 109.50467 * 59.25607 * 4 2 1 7 7 C 1.34772 * 120.00527 * 204.79915 * 6 4 2 8 8 O 1.21286 * 119.99563 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00459 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47413 * 180.02562 * 9 7 6 11 11 N 1.46903 * 109.47288 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00027 * 66.04587 * 11 10 9 13 13 C 1.46900 * 110.99723 * 190.00105 * 11 10 9 14 14 C 1.53130 * 109.27935 * 179.19827 * 4 2 1 15 15 C 1.53117 * 109.15488 * 302.34702 * 14 4 2 16 16 C 1.53037 * 109.28335 * 57.65527 * 15 14 4 17 17 N 1.46847 * 109.46208 * 240.03713 * 2 1 3 18 18 C 1.46894 * 111.00436 * 54.13938 * 17 2 1 19 19 C 1.50703 * 109.47312 * 199.78599 * 18 17 2 20 20 O 1.21296 * 119.99894 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99964 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99969 * 180.02562 * 21 19 18 23 23 H 1.08008 * 119.99835 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00095 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99878 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00161 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47066 * 90.00066 * 26 24 22 28 28 H 1.48495 * 109.47378 * 210.00386 * 26 24 22 29 29 H 1.48498 * 109.47071 * 330.00312 * 26 24 22 30 30 H 1.09002 * 109.46620 * 172.18331 * 1 2 3 31 31 H 1.08997 * 109.47045 * 292.17600 * 1 2 3 32 32 H 1.08995 * 109.47435 * 52.18416 * 1 2 3 33 33 H 0.97002 * 119.99551 * 24.80952 * 6 4 2 34 34 H 1.08996 * 109.47303 * 300.00326 * 9 7 6 35 35 H 1.09001 * 109.46913 * 60.00149 * 9 7 6 36 36 H 1.08996 * 109.46914 * 300.00272 * 10 9 7 37 37 H 1.09001 * 109.47199 * 60.00031 * 10 9 7 38 38 H 1.08996 * 109.47287 * 59.99919 * 12 11 10 39 39 H 1.09000 * 109.46957 * 180.02562 * 12 11 10 40 40 H 1.09007 * 109.46993 * 300.00432 * 12 11 10 41 41 H 1.09001 * 109.47292 * 60.00205 * 13 11 10 42 42 H 1.08999 * 109.46389 * 180.02562 * 13 11 10 43 43 H 1.08992 * 109.46968 * 299.99516 * 13 11 10 44 44 H 1.09001 * 109.52417 * 182.44195 * 14 4 2 45 45 H 1.08993 * 109.52080 * 62.25090 * 14 4 2 46 46 H 1.08999 * 109.50475 * 297.70831 * 15 14 4 47 47 H 1.09012 * 109.53453 * 177.61318 * 15 14 4 48 48 H 1.08998 * 109.46643 * 180.79874 * 16 15 14 49 49 H 1.09005 * 109.46131 * 60.83381 * 16 15 14 50 50 H 1.09002 * 109.47153 * 79.78240 * 18 17 2 51 51 H 1.09000 * 109.46874 * 319.78288 * 18 17 2 52 52 H 0.96998 * 120.00548 * 0.02562 * 21 19 18 53 53 H 0.97002 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2498 5 1 1.6896 -0.1989 2.1403 6 7 1.5373 -2.0969 1.2601 7 6 1.4127 -2.7603 2.4266 8 8 1.7163 -2.2178 3.4680 9 6 0.8952 -4.1755 2.4372 10 6 0.8515 -4.6919 3.8768 11 7 0.3475 -6.0717 3.8870 12 6 1.2880 -6.9806 3.2182 13 6 0.0672 -6.5196 5.2577 14 6 3.5711 -0.7360 1.2354 15 6 4.0548 -1.4186 -0.0469 16 6 3.4865 -0.6774 -1.2593 17 7 2.0193 -0.6915 -1.1995 18 6 1.4373 -0.1103 -2.4166 19 6 1.5512 -1.0979 -3.5491 20 8 2.0671 -2.1795 -3.3610 21 7 1.0809 -0.7791 -4.7712 22 6 1.1841 -1.6778 -5.8014 23 1 1.6427 -2.6412 -5.6337 24 6 0.6998 -1.3488 -7.0615 25 7 0.7982 -2.2105 -8.0488 26 14 -0.0927 0.3176 -7.3518 27 1 0.9458 1.2936 -7.7691 28 1 -1.1181 0.1990 -8.4193 29 1 -0.7358 0.7851 -6.0976 30 1 -0.3633 -1.0182 -0.1398 31 1 -0.3633 0.3879 0.9516 32 1 -0.3634 0.6300 -0.8118 33 1 1.2944 -2.5307 0.4271 34 1 -0.1084 -4.1986 2.0127 35 1 1.5553 -4.8082 1.8438 36 1 1.8549 -4.6688 4.3017 37 1 0.1912 -4.0591 4.4699 38 1 2.2475 -6.9551 3.7346 39 1 0.8902 -7.9952 3.2396 40 1 1.4239 -6.6657 2.1835 41 1 -0.6845 -5.8697 5.7057 42 1 -0.3040 -7.5442 5.2363 43 1 0.9824 -6.4774 5.8480 44 1 3.9381 -1.2863 2.1018 45 1 3.9457 0.2871 1.2671 46 1 3.7126 -2.4534 -0.0597 47 1 5.1441 -1.3950 -0.0839 48 1 3.8175 -1.1695 -2.1738 49 1 3.8403 0.3536 -1.2533 50 1 1.9733 0.8028 -2.6754 51 1 0.3868 0.1223 -2.2416 52 1 0.6694 0.0863 -4.9220 53 1 0.4604 -1.9807 -8.9286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734460758.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:27 Heat of formation + Delta-G solvation = -83.962226 kcal Electronic energy + Delta-G solvation = -31000.806209 eV Core-core repulsion = 26906.495826 eV Total energy + Delta-G solvation = -4094.310383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49229 -40.39325 -39.35617 -38.21438 -36.03986 -35.40443 -34.19411 -33.65116 -32.84378 -31.58373 -29.10171 -28.48960 -27.85717 -26.34188 -25.97295 -23.99627 -22.65243 -22.34638 -21.19867 -21.16102 -20.26244 -20.01217 -18.31574 -17.82683 -16.99852 -16.91275 -16.73015 -16.48718 -16.39398 -16.01783 -15.84991 -15.58769 -15.37200 -15.22671 -15.08784 -14.76482 -14.41592 -14.28406 -14.15174 -14.02170 -13.70526 -13.58300 -13.29192 -13.10785 -12.88256 -12.84550 -12.77795 -12.71097 -12.60963 -12.43711 -12.37688 -12.24523 -11.96492 -11.91632 -11.80240 -11.60275 -11.40174 -11.23340 -10.82231 -10.32169 -10.18052 -9.94020 -9.37121 -9.16743 -8.36964 -5.96648 1.32039 1.37487 1.46108 1.70203 2.04774 2.22763 2.25902 2.60380 3.07911 3.19832 3.28833 3.64373 3.83148 3.87430 3.99013 4.00670 4.07130 4.15643 4.27294 4.29084 4.37841 4.40707 4.44081 4.46059 4.47453 4.54647 4.61333 4.64422 4.69675 4.73758 4.82588 4.87898 4.93134 4.95910 4.98674 5.00411 5.02018 5.03560 5.06511 5.24643 5.30347 5.40708 5.57457 5.63133 5.95061 5.99815 6.04949 6.07531 6.23613 6.65356 6.66582 6.95091 7.31749 7.47279 8.05511 8.80780 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.002532 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.574522 B =11054.804128 C =12128.254721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.073 0.927 4 C 0.158 3.842 5 H 0.090 0.910 6 N -0.704 5.704 7 C 0.516 3.484 8 O -0.585 6.585 9 C -0.133 4.133 10 C 0.080 3.920 11 N -0.559 5.559 12 C 0.017 3.983 13 C 0.024 3.976 14 C -0.124 4.124 15 C -0.105 4.105 16 C 0.062 3.938 17 N -0.525 5.525 18 C 0.048 3.952 19 C 0.456 3.544 20 O -0.601 6.601 21 N -0.597 5.597 22 C -0.321 4.321 23 H 0.056 0.944 24 C -0.018 4.018 25 N -0.938 5.938 26 Si 0.962 3.038 27 H -0.260 1.260 28 H -0.278 1.278 29 H -0.229 1.229 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.045 0.955 50 H 0.078 0.922 51 H 0.124 0.876 52 H 0.387 0.613 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 4.736 23.365 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 H 0.091 0.909 4 C 0.053 3.947 5 H 0.108 0.892 6 N -0.354 5.354 7 C 0.303 3.697 8 O -0.466 6.466 9 C -0.174 4.174 10 C -0.049 4.049 11 N -0.283 5.283 12 C -0.131 4.131 13 C -0.124 4.124 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.066 4.066 17 N -0.251 5.251 18 C -0.082 4.082 19 C 0.243 3.757 20 O -0.484 6.484 21 N -0.240 5.240 22 C -0.450 4.450 23 H 0.074 0.926 24 C -0.216 4.216 25 N -0.579 5.579 26 Si 0.783 3.217 27 H -0.184 1.184 28 H -0.204 1.204 29 H -0.153 1.153 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.096 0.904 51 H 0.141 0.859 52 H 0.223 0.777 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.335 3.836 23.795 24.139 hybrid contribution 0.753 0.869 -0.982 1.512 sum -0.582 4.705 22.813 23.301 Atomic orbital electron populations 1.21942 0.92982 1.02739 1.02900 1.21959 0.96562 0.96156 0.88400 0.90944 1.20998 0.93521 0.82682 0.97496 0.89200 1.46013 1.65193 1.14936 1.09303 1.20866 0.76888 0.88727 0.83174 1.90656 1.52476 1.70413 1.33080 1.21601 1.04423 0.92066 0.99264 1.21685 0.98521 0.89252 0.95429 1.61993 1.45437 1.02135 1.18734 1.22517 0.93744 0.97338 0.99524 1.22421 1.00307 1.02042 0.87628 1.21931 0.95291 1.01797 0.97283 1.21436 1.00023 0.99495 0.93350 1.22045 0.86746 0.98901 0.98864 1.61327 1.07602 1.55453 1.00714 1.21923 1.03430 0.94360 0.88532 1.20912 0.81639 0.89334 0.83799 1.90537 1.47927 1.26515 1.83444 1.42063 1.56129 1.16777 1.08992 1.18969 1.38480 0.98443 0.89097 0.92616 1.26081 0.98011 1.03226 0.94285 1.69808 1.47557 1.37951 1.02583 0.85397 0.78890 0.77385 0.80051 1.18438 1.20362 1.15264 0.92523 0.90702 0.91060 0.75139 0.87103 0.88138 0.95387 0.90781 0.95651 0.90222 0.90976 0.90969 0.90105 0.95650 0.92430 0.89688 0.92837 0.90880 0.93014 0.93650 0.90420 0.85857 0.77732 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.30 71.98 0.60 -1.94 16 2 C 0.08 1.47 2.15 44.93 0.10 1.57 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.16 3.21 2.25 45.04 0.10 3.31 16 5 H 0.09 1.87 7.58 -2.39 -0.02 1.86 16 6 N -0.70 -15.30 3.82 -442.29 -1.69 -16.99 16 7 C 0.52 12.02 7.79 87.66 0.68 12.70 16 8 O -0.59 -17.10 15.65 -3.05 -0.05 -17.15 16 9 C -0.13 -2.55 5.62 29.85 0.17 -2.39 16 10 C 0.08 1.58 4.25 86.30 0.37 1.95 16 11 N -0.56 -10.02 5.02 -948.85 -4.76 -14.78 16 12 C 0.02 0.26 9.32 127.69 1.19 1.46 16 13 C 0.02 0.35 9.57 127.69 1.22 1.57 16 14 C -0.12 -2.53 5.67 30.68 0.17 -2.36 16 15 C -0.11 -2.48 5.93 30.65 0.18 -2.30 16 16 C 0.06 1.66 5.11 86.33 0.44 2.10 16 17 N -0.53 -13.58 3.53 -875.67 -3.09 -16.68 16 18 C 0.05 1.34 5.31 85.56 0.45 1.80 16 19 C 0.46 19.29 7.49 87.66 0.66 19.94 16 20 O -0.60 -31.25 14.74 -3.08 -0.05 -31.30 16 21 N -0.60 -27.00 5.09 -306.97 -1.56 -28.57 16 22 C -0.32 -18.30 10.16 84.04 0.85 -17.45 16 23 H 0.06 3.80 7.39 -2.91 -0.02 3.78 16 24 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 25 N -0.94 -56.09 13.96 21.66 0.30 -55.79 16 26 Si 0.96 38.10 27.74 68.60 1.90 40.01 16 27 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 28 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 30 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 31 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.07 1.08 6.38 -2.39 -0.02 1.07 16 33 H 0.41 9.56 7.95 -92.71 -0.74 8.82 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 1.80 6.55 -2.39 -0.02 1.79 16 36 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 37 H 0.07 1.56 8.02 -2.39 -0.02 1.54 16 38 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 40 H 0.07 1.14 6.47 -2.38 -0.02 1.12 16 41 H 0.07 0.98 8.12 -2.39 -0.02 0.97 16 42 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 43 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 1.47 7.73 -2.39 -0.02 1.45 16 47 H 0.07 1.57 8.14 -2.38 -0.02 1.56 16 48 H 0.05 1.81 6.69 -2.39 -0.02 1.80 16 49 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.08 1.81 8.00 -2.39 -0.02 1.79 16 51 H 0.12 2.79 5.42 -2.39 -0.01 2.78 16 52 H 0.39 14.50 5.76 -92.71 -0.53 13.96 16 53 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -75.34 410.33 -1.76 -77.10 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -0.42 Total: 44.70 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 7.65 Total: 19.45 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -10.80 Total: -132.81 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.09 Total: -48.45 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -75.34 -1.76 -77.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734460758.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.860 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds