Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47538 * 2 1 4 4 C 1.53000 * 109.47162 * 239.99534 * 2 1 3 5 5 C 1.53003 * 109.46936 * 175.00306 * 4 2 1 6 6 N 1.46499 * 109.46964 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99887 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00022 * 355.60837 * 7 6 5 9 9 C 1.50698 * 119.99703 * 175.60452 * 7 6 5 10 10 N 1.46897 * 112.84800 * 171.16061 * 9 7 6 11 11 C 1.46905 * 111.00222 * 301.65940 * 10 9 7 12 12 C 1.46900 * 111.00337 * 65.61149 * 10 9 7 13 13 C 1.53781 * 113.61692 * 39.85696 * 9 7 6 14 14 C 1.53779 * 87.08286 * 220.01482 * 13 9 7 15 15 C 1.53774 * 113.62023 * 302.35707 * 9 7 6 16 16 N 1.46901 * 109.46814 * 120.00074 * 2 1 3 17 17 C 1.46902 * 111.00132 * 275.00135 * 16 2 1 18 18 C 1.50702 * 109.47413 * 180.02562 * 17 16 2 19 19 O 1.21297 * 119.99645 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99895 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99994 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99914 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00252 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99914 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47091 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.46831 * 119.99952 * 25 23 21 28 28 H 1.48501 * 109.47089 * 239.99966 * 25 23 21 29 29 H 1.09007 * 109.46535 * 60.00107 * 1 2 3 30 30 H 1.08998 * 109.47538 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47596 * 300.00294 * 1 2 3 32 32 H 1.08994 * 109.47447 * 295.00669 * 4 2 1 33 33 H 1.09002 * 109.47060 * 55.00936 * 4 2 1 34 34 H 1.09003 * 109.47310 * 300.00296 * 5 4 2 35 35 H 1.09002 * 109.47171 * 60.00735 * 5 4 2 36 36 H 0.96998 * 120.00240 * 0.02562 * 6 5 4 37 37 H 1.08998 * 109.47254 * 60.86847 * 11 10 9 38 38 H 1.09000 * 109.47335 * 180.86906 * 11 10 9 39 39 H 1.08999 * 109.47018 * 300.86866 * 11 10 9 40 40 H 1.09000 * 109.46766 * 59.99710 * 12 10 9 41 41 H 1.09002 * 109.47778 * 180.02562 * 12 10 9 42 42 H 1.09001 * 109.46862 * 300.00554 * 12 10 9 43 43 H 1.09004 * 113.61440 * 334.56812 * 13 9 7 44 44 H 1.09005 * 113.61644 * 105.46537 * 13 9 7 45 45 H 1.08997 * 113.61614 * 270.88101 * 14 13 9 46 46 H 1.09003 * 113.68918 * 139.98997 * 14 13 9 47 47 H 1.08998 * 113.61690 * 254.53600 * 15 9 7 48 48 H 1.09004 * 113.61394 * 25.43035 * 15 9 7 49 49 H 1.00906 * 111.00251 * 38.95071 * 16 2 1 50 50 H 1.09001 * 109.46457 * 299.99590 * 17 16 2 51 51 H 1.08997 * 109.47053 * 59.99682 * 17 16 2 52 52 H 0.96999 * 120.00223 * 0.02562 * 20 18 17 53 53 H 0.97001 * 120.00415 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3135 6 7 4.0531 -1.3036 -2.5100 7 6 5.3740 -1.3389 -2.7757 8 8 6.1511 -0.7327 -2.0689 9 6 5.8852 -2.1317 -3.9509 10 7 7.3104 -1.8985 -4.2197 11 6 7.5718 -0.4759 -4.4771 12 6 8.1426 -2.3951 -3.1157 13 6 4.9952 -2.0244 -5.2004 14 6 5.2543 -3.5246 -5.4174 15 6 5.5031 -3.6204 -3.9029 16 7 2.0196 -0.6925 1.1995 17 6 2.0823 0.2225 2.3470 18 6 2.5883 -0.5216 3.5558 19 8 2.8686 -1.6986 3.4700 20 7 2.7293 0.1207 4.7322 21 6 3.1892 -0.5564 5.8321 22 1 3.4387 -1.6044 5.7557 23 6 3.3341 0.1057 7.0451 24 7 3.0309 1.3810 7.1379 25 14 3.9613 -0.8167 8.5436 26 1 4.2297 -2.2306 8.1779 27 1 5.2146 -0.1831 9.0259 28 1 2.9374 -0.7696 9.6182 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -1.7715 -1.2056 33 1 1.6055 -0.2618 -2.1370 34 1 3.8533 0.4368 -1.3572 35 1 3.9994 -1.0730 -0.4258 36 1 3.4258 -1.7345 -3.1113 37 1 7.2943 0.1090 -3.6003 38 1 8.6316 -0.3336 -4.6883 39 1 6.9833 -0.1477 -5.3339 40 1 7.9809 -3.4659 -2.9921 41 1 9.1930 -2.2094 -3.3403 42 1 7.8713 -1.8781 -2.1952 43 1 3.9548 -1.7888 -4.9764 44 1 5.4147 -1.3912 -5.9823 45 1 6.1390 -3.7323 -6.0192 46 1 4.3760 -4.0769 -5.7515 47 1 6.3325 -4.2758 -3.6372 48 1 4.6015 -3.8213 -3.3242 49 1 1.4494 -1.4980 1.4101 50 1 2.7588 1.0460 2.1183 51 1 1.0869 0.6163 2.5525 52 1 2.5048 1.0619 4.8010 53 1 3.1324 1.8433 7.9846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753007443.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -72.268521 kcal Electronic energy + Delta-G solvation = -30212.944359 eV Core-core repulsion = 26119.141053 eV Total energy + Delta-G solvation = -4093.803306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96864 -40.25655 -39.07620 -38.24449 -36.60032 -35.97065 -35.20306 -33.34158 -32.55579 -30.01992 -28.94754 -27.98072 -27.43201 -26.19220 -25.80953 -24.62694 -23.31409 -22.22511 -21.61116 -21.10888 -19.97829 -19.81315 -18.43934 -17.76176 -17.34990 -16.93774 -16.72261 -16.49162 -16.36297 -16.05334 -15.79755 -15.72559 -15.58324 -15.22809 -14.91227 -14.70945 -14.49816 -14.30647 -14.06133 -13.58078 -13.52680 -13.37887 -13.11675 -13.01669 -12.98408 -12.86738 -12.69999 -12.67888 -12.52576 -12.43775 -12.40381 -12.21278 -12.16503 -12.09844 -11.74730 -11.61615 -11.53948 -11.20706 -11.04917 -10.37550 -10.07525 -10.04189 -9.29770 -9.19659 -8.49513 -5.98356 1.34073 1.39051 1.51615 1.53561 2.02600 2.18286 2.26863 2.79305 2.92875 3.17654 3.53141 3.54208 3.59484 3.77219 3.85691 3.90594 4.11391 4.13629 4.20498 4.31690 4.39967 4.43279 4.47269 4.54043 4.55332 4.58841 4.61394 4.67740 4.71082 4.72585 4.89046 4.89843 4.91942 4.98563 5.03573 5.10873 5.12669 5.17659 5.20397 5.24639 5.31297 5.38227 5.42127 5.50251 5.88231 5.89765 5.93958 6.12423 6.45451 6.55614 6.57344 7.09915 7.25190 7.53420 8.08831 8.68221 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.002146 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.664877 B =13043.396645 C =14321.324973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.080 0.920 4 C -0.102 4.102 5 C 0.129 3.871 6 N -0.712 5.712 7 C 0.489 3.511 8 O -0.585 6.585 9 C 0.050 3.950 10 N -0.493 5.493 11 C 0.013 3.987 12 C 0.011 3.989 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.124 4.124 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.413 0.587 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.024 0.976 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.096 0.904 49 H 0.345 0.655 50 H 0.096 0.904 51 H 0.068 0.932 52 H 0.396 0.604 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 -3.769 -29.218 29.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.140 4.140 5 C 0.005 3.995 6 N -0.365 5.365 7 C 0.275 3.725 8 O -0.466 6.466 9 C -0.045 4.045 10 N -0.215 5.215 11 C -0.135 4.135 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.162 4.162 16 N -0.310 5.310 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.193 1.193 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.251 0.749 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.114 0.886 49 H 0.164 0.836 50 H 0.114 0.886 51 H 0.086 0.914 52 H 0.230 0.770 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.857 -4.175 -29.194 29.504 hybrid contribution -0.802 0.806 2.289 2.556 sum -1.659 -3.369 -26.905 27.166 Atomic orbital electron populations 1.22425 0.95213 1.02759 1.02993 1.21638 0.93912 0.97949 0.89198 0.90167 1.21688 0.92188 1.02292 0.97806 1.21160 0.95663 0.95993 0.86684 1.46051 1.07359 1.56366 1.26719 1.22253 0.82644 0.80858 0.86774 1.90648 1.56725 1.46587 1.52605 1.22769 0.90572 0.97709 0.93426 1.62419 1.01903 1.17883 1.39310 1.22513 1.02669 0.87633 1.00695 1.22514 0.97851 1.00601 0.92727 1.23073 0.98579 0.99156 0.94417 1.22654 1.03054 0.94867 0.94177 1.23104 1.02188 0.91340 0.99601 1.60206 1.58675 1.09139 1.03011 1.21522 1.00887 0.95310 0.88859 1.20952 0.83378 0.88040 0.85196 1.90488 1.56645 1.18389 1.85464 1.41955 1.58357 1.12603 1.08287 1.19687 1.42146 0.95901 0.88540 0.90472 1.26058 0.97230 0.96657 1.01436 1.69675 1.48687 1.09670 1.28124 0.84869 0.78219 0.77986 0.77248 1.19867 1.19668 1.19290 0.89745 0.91979 0.93243 0.90500 0.88021 0.93507 0.93911 0.74894 0.95909 0.90452 0.90187 0.90852 0.90414 0.95770 0.87702 0.89826 0.89416 0.88901 0.90816 0.88572 0.83592 0.88597 0.91397 0.77013 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.16 71.98 0.66 -2.19 16 2 C 0.08 1.71 2.59 44.91 0.12 1.83 16 3 H 0.08 1.66 7.80 -2.39 -0.02 1.65 16 4 C -0.10 -1.69 5.01 30.60 0.15 -1.54 16 5 C 0.13 3.12 5.57 86.38 0.48 3.60 16 6 N -0.71 -13.98 5.28 -463.05 -2.44 -16.42 16 7 C 0.49 12.24 6.49 87.66 0.57 12.81 16 8 O -0.59 -20.63 12.31 -3.02 -0.04 -20.66 16 9 C 0.05 0.90 0.42 3.31 0.00 0.90 16 10 N -0.49 -9.98 4.80 -899.96 -4.32 -14.30 16 11 C 0.01 0.26 9.14 127.69 1.17 1.43 16 12 C 0.01 0.25 9.17 127.69 1.17 1.42 16 13 C -0.11 -1.22 7.06 31.12 0.22 -1.00 16 14 C -0.11 -1.02 8.00 31.12 0.25 -0.77 16 15 C -0.12 -1.75 7.13 31.12 0.22 -1.52 16 16 N -0.68 -20.75 5.33 -495.58 -2.64 -23.39 16 17 C 0.07 2.33 5.97 85.56 0.51 2.84 16 18 C 0.44 21.42 7.82 87.66 0.69 22.11 16 19 O -0.62 -35.54 15.78 -3.08 -0.05 -35.59 16 20 N -0.57 -30.44 5.29 -306.98 -1.62 -32.06 16 21 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 25 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.05 0.91 7.45 -2.39 -0.02 0.89 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 36 H 0.41 4.87 6.93 -92.71 -0.64 4.23 16 37 H 0.02 0.61 5.86 -2.39 -0.01 0.59 16 38 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 39 H 0.08 1.30 7.06 -2.39 -0.02 1.29 16 40 H 0.07 1.49 6.62 -2.39 -0.02 1.47 16 41 H 0.08 1.53 8.13 -2.39 -0.02 1.51 16 42 H 0.02 0.72 5.84 -2.39 -0.01 0.71 16 43 H 0.10 0.70 6.63 -2.39 -0.02 0.69 16 44 H 0.08 0.88 7.16 -2.38 -0.02 0.87 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.07 1.15 6.66 -2.39 -0.02 1.14 16 48 H 0.10 1.21 7.98 -2.38 -0.02 1.19 16 49 H 0.34 11.04 8.17 -89.69 -0.73 10.31 16 50 H 0.10 3.16 8.06 -2.39 -0.02 3.14 16 51 H 0.07 2.05 7.44 -2.39 -0.02 2.04 16 52 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 53 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -77.67 415.42 -2.49 -80.16 By element: Atomic # 1 Polarization: 46.92 SS G_CDS: -1.17 Total: 45.75 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.48 Total: 20.92 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -10.75 Total: -136.64 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.09 Total: -56.25 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.67 -2.49 -80.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753007443.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.893 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds