Wall clock time and date at job start Sat Apr 11 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47088 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46774 * 120.00114 * 15 13 11 18 18 H 1.48502 * 109.46981 * 240.00223 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.53110 * 109.52079 * 299.68543 * 22 20 19 24 24 C 1.53043 * 109.27671 * 182.43915 * 23 22 20 25 25 N 1.46851 * 109.52173 * 59.17825 * 24 23 22 26 26 C 1.46896 * 110.99780 * 174.15851 * 25 24 23 27 27 C 1.46840 * 111.19758 * 298.25827 * 25 24 23 28 28 C 1.53035 * 109.52661 * 61.74460 * 27 25 24 29 29 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 32 32 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 33 33 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 34 34 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 35 35 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 36 36 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 37 37 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 38 38 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 39 39 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 40 40 H 0.96994 * 120.00109 * 179.97438 * 14 13 11 41 41 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 42 42 H 1.09005 * 109.52036 * 59.87665 * 22 20 19 43 43 H 1.09002 * 109.50823 * 302.37638 * 23 22 20 44 44 H 1.08994 * 109.50678 * 62.49869 * 23 22 20 45 45 H 1.08996 * 109.46101 * 299.16235 * 24 23 22 46 46 H 1.08996 * 109.46250 * 179.19118 * 24 23 22 47 47 H 1.09008 * 109.47230 * 184.20705 * 26 25 24 48 48 H 1.08995 * 109.47779 * 304.21396 * 26 25 24 49 49 H 1.08999 * 109.47050 * 64.21074 * 26 25 24 50 50 H 1.08995 * 109.46355 * 301.72179 * 27 25 24 51 51 H 1.09001 * 109.45273 * 181.75198 * 27 25 24 52 52 H 1.08993 * 109.50429 * 180.87563 * 28 27 25 53 53 H 1.09007 * 109.50401 * 60.75652 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 7.5727 -4.3985 -4.5483 15 14 9.9962 -4.2107 -3.2206 16 1 10.4443 -3.4965 -1.9981 17 1 10.1994 -5.6709 -3.0428 18 1 10.7852 -3.7394 -4.3870 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 1.7022 -1.8793 3.9372 24 6 2.1842 -2.5583 5.2213 25 7 2.2157 -1.5770 6.3133 26 6 2.5405 -2.2227 7.5921 27 6 3.1549 -0.4868 6.0205 28 6 2.7020 0.2540 4.7604 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2953 34 1 3.9101 0.9468 -2.2411 35 1 3.7381 1.1364 -0.4797 36 1 5.2101 0.3988 -1.1559 37 1 3.4545 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7015 -3.1840 -3.6191 40 1 8.0624 -4.9715 -5.1588 41 1 2.2490 -1.6318 1.1525 42 1 3.6485 -1.1229 3.3979 43 1 0.6958 -1.4888 4.0878 44 1 1.6938 -2.6042 3.1233 45 1 3.1851 -2.9607 5.0656 46 1 1.5034 -3.3689 5.4810 47 1 2.4841 -1.4876 8.3950 48 1 1.8297 -3.0262 7.7844 49 1 3.5491 -2.6334 7.5458 50 1 4.1513 -0.8989 5.8612 51 1 3.1790 0.2070 6.8608 52 1 3.4078 1.0532 4.5346 53 1 1.7112 0.6782 4.9239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754322627.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:51 Heat of formation + Delta-G solvation = -95.669778 kcal Electronic energy + Delta-G solvation = -30700.433533 eV Core-core repulsion = 26605.615472 eV Total energy + Delta-G solvation = -4094.818060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30089 -40.35520 -39.39178 -38.22080 -36.10281 -35.49796 -34.61383 -33.25274 -32.13906 -31.55558 -29.48307 -28.03933 -27.99315 -26.64651 -24.70825 -24.13432 -23.76078 -21.98735 -21.29617 -20.94360 -20.57318 -19.83164 -18.29989 -17.72042 -17.35014 -16.69575 -16.60040 -16.45847 -16.19685 -16.04180 -15.88964 -15.62184 -15.52015 -15.14172 -15.07754 -14.69868 -14.46873 -14.23551 -14.05636 -13.64745 -13.49272 -13.40154 -13.30186 -13.20570 -13.11343 -12.88824 -12.78187 -12.65335 -12.52321 -12.43343 -12.37298 -12.23047 -12.14862 -12.12019 -11.74420 -11.63889 -11.44983 -11.41735 -10.64089 -10.25645 -9.97519 -9.93190 -9.29522 -9.20517 -8.45345 -5.93124 1.36393 1.41809 1.55278 1.73394 2.09261 2.27596 2.31894 2.76819 2.99035 3.22120 3.44471 3.64392 3.77031 3.80303 3.87012 4.16932 4.17433 4.22615 4.27331 4.35368 4.37100 4.44035 4.49108 4.54202 4.56322 4.56410 4.59086 4.59630 4.71156 4.73405 4.75520 4.79518 4.83125 4.88884 4.95181 5.03697 5.04613 5.10568 5.16630 5.18318 5.30564 5.34144 5.42871 5.64190 5.88682 6.06623 6.10092 6.13045 6.19577 6.63475 6.68173 7.15967 7.36517 7.60265 8.16646 8.72287 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.002586 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.357003 B =10823.373845 C =12671.962619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.061 0.939 4 C 0.047 3.953 5 N -0.527 5.527 6 C 0.031 3.969 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.614 6.614 10 N -0.576 5.576 11 C -0.328 4.328 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.698 5.698 20 C 0.519 3.481 21 O -0.588 6.588 22 C -0.107 4.107 23 C -0.097 4.097 24 C 0.056 3.944 25 N -0.556 5.556 26 C 0.024 3.976 27 C 0.059 3.941 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.410 0.590 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.035 0.965 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.025 0.975 50 H 0.033 0.967 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 2.081 13.736 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.079 0.921 4 C -0.080 4.080 5 N -0.252 5.252 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.500 6.500 10 N -0.214 5.214 11 C -0.457 4.457 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.813 3.187 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.348 5.348 20 C 0.307 3.693 21 O -0.469 6.469 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.072 4.072 25 N -0.281 5.281 26 C -0.123 4.123 27 C -0.069 4.069 28 C -0.128 4.128 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.246 0.754 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.044 0.956 50 H 0.051 0.949 51 H 0.104 0.896 52 H 0.078 0.922 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.619 3.100 14.725 22.419 hybrid contribution 1.767 -0.541 -1.346 2.286 sum -14.852 2.560 13.379 20.153 Atomic orbital electron populations 1.22051 0.93217 1.03266 1.02422 1.20959 0.94632 0.96289 0.84015 0.92086 1.22576 0.86319 1.02605 0.96534 1.61496 1.05542 1.11390 1.46726 1.22338 1.00548 0.89491 0.99337 1.21774 0.92095 0.99442 0.94009 1.20823 0.89986 0.82161 0.84047 1.90476 1.71620 1.55089 1.32814 1.41942 1.09846 1.43813 1.25795 1.19639 0.86575 1.28409 1.11107 0.90529 1.25973 1.04176 0.96075 0.95043 1.69668 1.38714 1.33114 1.14730 0.84928 0.77365 0.78239 0.78163 1.19934 1.19590 1.19805 1.45824 1.65811 1.14534 1.08638 1.20855 0.76453 0.86672 0.85343 1.90642 1.52560 1.17760 1.85967 1.21385 1.01214 0.97652 0.92545 1.21523 0.98434 0.95760 0.97800 1.22132 1.00384 0.94262 0.90448 1.61966 1.50901 1.11677 1.03543 1.22398 0.99544 0.99676 0.90713 1.22078 0.93233 0.93826 0.97753 1.21299 1.02222 0.96671 0.92636 0.90205 0.90567 0.93655 0.91861 0.87778 0.95273 0.92001 0.92741 0.86451 0.91585 0.77035 0.91401 0.75375 0.88934 0.91130 0.89315 0.94714 0.88861 0.90754 0.90311 0.95632 0.94872 0.89622 0.92151 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.15 3.16 2.36 45.00 0.11 3.27 16 3 H 0.06 1.66 6.15 -2.39 -0.01 1.65 16 4 C 0.05 0.95 4.52 86.30 0.39 1.34 16 5 N -0.53 -15.45 4.22 -927.04 -3.92 -19.36 16 6 C 0.03 1.02 9.01 127.69 1.15 2.17 16 7 C 0.06 1.82 5.45 85.56 0.47 2.29 16 8 C 0.44 20.14 7.51 87.66 0.66 20.80 16 9 O -0.61 -32.85 13.88 -3.06 -0.04 -32.89 16 10 N -0.58 -28.66 5.29 -306.99 -1.62 -30.28 16 11 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 12 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 13 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 14 N -0.92 -48.95 13.05 21.66 0.28 -48.66 16 15 Si 0.99 42.57 29.55 68.60 2.03 44.59 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 19 N -0.70 -15.90 4.71 -442.52 -2.08 -17.98 16 20 C 0.52 13.89 7.12 87.66 0.62 14.51 16 21 O -0.59 -20.02 15.64 -3.05 -0.05 -20.07 16 22 C -0.11 -2.35 2.59 -11.46 -0.03 -2.38 16 23 C -0.10 -1.64 5.26 30.65 0.16 -1.48 16 24 C 0.06 0.88 5.46 86.33 0.47 1.35 16 25 N -0.56 -9.66 4.91 -922.61 -4.53 -14.19 16 26 C 0.02 0.33 9.59 127.69 1.22 1.55 16 27 C 0.06 1.10 5.46 86.33 0.47 1.57 16 28 C -0.09 -2.03 4.68 30.65 0.14 -1.89 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 33 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 1.97 6.40 -2.39 -0.02 1.96 16 36 H 0.05 2.25 5.88 -2.39 -0.01 2.24 16 37 H 0.12 3.05 7.93 -2.39 -0.02 3.03 16 38 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 39 H 0.40 18.64 7.90 -92.70 -0.73 17.91 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.41 8.29 8.09 -92.71 -0.75 7.54 16 42 H 0.09 2.13 8.14 -2.38 -0.02 2.12 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.22 7.66 -2.39 -0.02 1.20 16 45 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 47 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 49 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 52 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.06 1.63 8.04 -2.38 -0.02 1.61 16 Total: -1.00 -71.10 417.81 -2.71 -73.82 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.58 Total: 41.47 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 7.80 Total: 23.54 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -11.87 Total: -130.47 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.09 Total: -52.96 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.10 -2.71 -73.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322627.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.852 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds