Wall clock time and date at job start Sat Apr 11 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47269 * 120.00337 * 2 1 3 5 5 N 1.46902 * 109.47075 * 174.99912 * 4 2 1 6 6 C 1.46900 * 111.00038 * 66.04510 * 5 4 2 7 7 C 1.46907 * 110.99685 * 189.99395 * 5 4 2 8 8 C 1.50706 * 109.46775 * 169.99912 * 7 5 4 9 9 O 1.21294 * 120.00040 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99698 * 180.02562 * 8 7 5 11 11 C 1.37095 * 119.99589 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00233 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00059 * 180.02562 * 11 10 8 14 14 N 1.31403 * 120.00332 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99698 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47120 * 90.00259 * 15 13 11 17 17 H 1.48497 * 109.47259 * 210.00477 * 15 13 11 18 18 H 1.48505 * 109.47374 * 330.00289 * 15 13 11 19 19 N 1.46506 * 109.46973 * 240.00043 * 2 1 3 20 20 C 1.34772 * 119.99736 * 85.00356 * 19 2 1 21 21 O 1.21283 * 120.00344 * 359.97438 * 20 19 2 22 22 C 1.50698 * 119.99643 * 180.02562 * 20 19 2 23 23 C 1.53124 * 109.52411 * 299.67859 * 22 20 19 24 24 C 1.53035 * 109.27794 * 182.44305 * 23 22 20 25 25 N 1.46844 * 109.52494 * 59.18054 * 24 23 22 26 26 C 1.46897 * 111.00090 * 174.16001 * 25 24 23 27 27 C 1.46854 * 111.19703 * 298.25280 * 25 24 23 28 28 C 1.53037 * 109.51886 * 61.74789 * 27 25 24 29 29 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47288 * 300.00042 * 1 2 3 31 31 H 1.08994 * 109.47305 * 60.00081 * 1 2 3 32 32 H 1.09008 * 109.46785 * 294.99646 * 4 2 1 33 33 H 1.09002 * 109.47402 * 54.99458 * 4 2 1 34 34 H 1.09008 * 109.47149 * 59.99726 * 6 5 4 35 35 H 1.08996 * 109.47088 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47159 * 299.99878 * 6 5 4 37 37 H 1.08992 * 109.47630 * 290.00062 * 7 5 4 38 38 H 1.08994 * 109.46658 * 50.00456 * 7 5 4 39 39 H 0.96994 * 120.00020 * 359.97438 * 10 8 7 40 40 H 0.97006 * 120.00249 * 179.97438 * 14 13 11 41 41 H 0.97000 * 119.99806 * 264.99703 * 19 2 1 42 42 H 1.08999 * 109.58105 * 59.83879 * 22 20 19 43 43 H 1.08999 * 109.50059 * 302.38251 * 23 22 20 44 44 H 1.08993 * 109.49981 * 62.49898 * 23 22 20 45 45 H 1.09002 * 109.46466 * 299.16376 * 24 23 22 46 46 H 1.09002 * 109.46192 * 179.19659 * 24 23 22 47 47 H 1.09004 * 109.47425 * 184.20891 * 26 25 24 48 48 H 1.08999 * 109.47215 * 304.20975 * 26 25 24 49 49 H 1.09004 * 109.47700 * 64.20982 * 26 25 24 50 50 H 1.08994 * 109.46310 * 301.73015 * 27 25 24 51 51 H 1.09004 * 109.45281 * 181.75170 * 27 25 24 52 52 H 1.09000 * 109.50480 * 180.88135 * 28 27 25 53 53 H 1.08992 * 109.50737 * 60.75564 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1903 6 6 4.1310 0.4992 1.2719 7 6 4.0107 -1.7144 2.2454 8 6 5.4725 -1.9938 2.0077 9 8 6.0367 -1.5015 1.0535 10 7 6.1527 -2.7908 2.8554 11 6 7.4826 -3.0445 2.6395 12 1 7.9850 -2.6061 1.7899 13 6 8.1839 -3.8665 3.5131 14 7 9.4584 -4.1101 3.3059 15 14 7.3147 -4.6253 4.9822 16 1 6.7452 -5.9410 4.5951 17 1 8.2863 -4.8130 6.0895 18 1 6.2217 -3.7252 5.4300 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0182 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5877 23 6 4.0555 -1.2740 -3.3260 24 6 4.5836 -1.9409 -4.5981 25 7 4.6149 -0.9596 -5.6901 26 6 5.2455 -1.5266 -6.8895 27 6 3.2682 -0.4572 -5.9912 28 6 2.7009 0.2542 -4.7607 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7199 1.2951 34 1 3.8524 0.9757 2.2119 35 1 5.2148 0.3921 1.2265 36 1 3.7911 1.1138 0.4383 37 1 3.8858 -1.2339 3.2157 38 1 3.4545 -2.6516 2.2298 39 1 5.7016 -3.1842 3.6187 40 1 9.9481 -4.6837 3.9160 41 1 2.2490 -1.6318 -1.1526 42 1 1.9785 -1.5528 -3.8325 43 1 4.7165 -0.4546 -3.0434 44 1 4.0177 -2.0065 -2.5198 45 1 3.9298 -2.7688 -4.8725 46 1 5.5908 -2.3176 -4.4194 47 1 5.3233 -0.7569 -7.6575 48 1 6.2416 -1.8912 -6.6385 49 1 4.6398 -2.3523 -7.2628 50 1 2.6206 -1.2920 -6.2589 51 1 3.3202 0.2439 -6.8242 52 1 1.6952 0.6133 -4.9794 53 1 3.3406 1.0974 -4.5006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754322636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:54 Heat of formation + Delta-G solvation = -90.293889 kcal Electronic energy + Delta-G solvation = -31068.460487 eV Core-core repulsion = 26973.875543 eV Total energy + Delta-G solvation = -4094.584944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30051 -40.45303 -39.40997 -38.24447 -36.11690 -35.51284 -34.62501 -33.71144 -32.14374 -31.54503 -29.60850 -28.04273 -27.99230 -26.53335 -24.70543 -24.10967 -23.69442 -21.98489 -21.27886 -21.19287 -20.57530 -20.12391 -18.28442 -17.69672 -17.31340 -16.81227 -16.66643 -16.60807 -16.08006 -16.02334 -15.77864 -15.54272 -15.47408 -15.07425 -15.04695 -14.81329 -14.52656 -14.29866 -14.06610 -13.98307 -13.58807 -13.42379 -13.38981 -13.20873 -13.15251 -12.87884 -12.75949 -12.65853 -12.53646 -12.42424 -12.37054 -12.24152 -12.14832 -11.96231 -11.71141 -11.66697 -11.43240 -11.40515 -10.64444 -10.31362 -10.19095 -9.92668 -9.25577 -9.19988 -8.37958 -5.98176 1.31697 1.37554 1.46091 1.72184 2.02410 2.25413 2.32281 2.64563 2.99518 3.18123 3.28602 3.65069 3.76652 3.81570 3.88463 4.10905 4.16455 4.20870 4.26000 4.33408 4.36328 4.42682 4.46941 4.48009 4.54681 4.55585 4.57151 4.59430 4.71120 4.71553 4.77593 4.80685 4.83533 4.88784 4.94052 5.03089 5.05120 5.12527 5.18855 5.20713 5.31449 5.36025 5.56592 5.65056 5.92221 6.02764 6.12135 6.16189 6.18382 6.64101 6.68607 6.93690 7.37189 7.45360 8.03992 8.79895 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.002978 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.996160 B = 9401.517110 C =11601.246273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.059 0.941 4 C 0.048 3.952 5 N -0.529 5.529 6 C 0.032 3.968 7 C 0.054 3.946 8 C 0.452 3.548 9 O -0.603 6.603 10 N -0.594 5.594 11 C -0.324 4.324 12 H 0.054 0.946 13 C -0.017 4.017 14 N -0.938 5.938 15 Si 0.965 3.035 16 H -0.256 1.256 17 H -0.279 1.279 18 H -0.231 1.231 19 N -0.698 5.698 20 C 0.518 3.482 21 O -0.589 6.589 22 C -0.099 4.099 23 C -0.098 4.098 24 C 0.061 3.939 25 N -0.567 5.567 26 C 0.026 3.974 27 C 0.061 3.939 28 C -0.091 4.091 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.411 0.589 42 H 0.118 0.882 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.035 0.965 50 H 0.048 0.952 51 H 0.085 0.915 52 H 0.076 0.924 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.657 1.437 -9.398 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.077 0.923 4 C -0.079 4.079 5 N -0.254 5.254 6 C -0.116 4.116 7 C -0.077 4.077 8 C 0.240 3.760 9 O -0.486 6.486 10 N -0.236 5.236 11 C -0.453 4.453 12 H 0.072 0.928 13 C -0.215 4.215 14 N -0.579 5.579 15 Si 0.785 3.215 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.154 1.154 19 N -0.348 5.348 20 C 0.305 3.695 21 O -0.469 6.469 22 C -0.120 4.120 23 C -0.136 4.136 24 C -0.067 4.067 25 N -0.292 5.292 26 C -0.121 4.121 27 C -0.066 4.066 28 C -0.130 4.130 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.135 0.865 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.095 0.905 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.890 2.691 -10.300 24.341 hybrid contribution 0.220 -0.914 1.301 1.605 sum -21.670 1.776 -8.999 23.531 Atomic orbital electron populations 1.22047 0.93197 1.03275 1.02431 1.20972 0.94639 0.96305 0.84154 0.92320 1.22585 0.86094 1.02776 0.96464 1.61464 1.05665 1.11360 1.46883 1.22313 1.00281 0.89560 0.99484 1.21862 0.91298 1.00033 0.94471 1.20941 0.90117 0.81355 0.83631 1.90542 1.71623 1.53974 1.32475 1.42037 1.09290 1.45893 1.26422 1.18970 0.85609 1.28940 1.11769 0.92819 1.26106 0.96194 0.97363 1.01866 1.69811 1.09951 1.38377 1.39739 0.85367 0.79154 0.79827 0.77151 1.18014 1.20469 1.15397 1.45830 1.65783 1.14556 1.08680 1.20887 0.76293 0.86747 0.85559 1.90644 1.52598 1.17724 1.85979 1.21365 0.98137 0.99645 0.92836 1.21439 0.94136 1.00204 0.97853 1.22032 1.01164 0.92912 0.90582 1.61879 1.21191 1.37904 1.08268 1.22367 0.99183 0.98951 0.91630 1.22102 0.88187 0.98975 0.97366 1.21332 1.01232 0.97179 0.93226 0.90501 0.90152 0.93756 0.91597 0.87401 0.94834 0.93036 0.92480 0.90623 0.85394 0.77590 0.91297 0.75325 0.86450 0.93822 0.90389 0.93010 0.91092 0.90569 0.91564 0.94658 0.93360 0.89656 0.90529 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.48 71.98 0.68 -1.63 16 2 C 0.14 2.92 2.35 44.99 0.11 3.02 16 3 H 0.06 1.55 6.23 -2.39 -0.01 1.53 16 4 C 0.05 0.85 4.52 86.30 0.39 1.24 16 5 N -0.53 -14.26 4.22 -927.02 -3.92 -18.18 16 6 C 0.03 1.00 8.96 127.69 1.14 2.15 16 7 C 0.05 1.49 5.45 85.56 0.47 1.96 16 8 C 0.45 19.35 7.47 87.66 0.66 20.00 16 9 O -0.60 -32.09 13.91 -3.07 -0.04 -32.13 16 10 N -0.59 -26.95 5.09 -306.98 -1.56 -28.51 16 11 C -0.32 -18.61 10.16 84.04 0.85 -17.76 16 12 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 13 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 14 N -0.94 -56.30 13.96 21.66 0.30 -56.00 16 15 Si 0.96 37.98 27.74 68.60 1.90 39.88 16 16 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 17 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 19 N -0.70 -15.15 4.71 -442.54 -2.08 -17.24 16 20 C 0.52 13.50 7.12 87.66 0.62 14.13 16 21 O -0.59 -19.75 15.64 -3.04 -0.05 -19.80 16 22 C -0.10 -2.11 2.59 -11.46 -0.03 -2.14 16 23 C -0.10 -2.39 5.26 30.65 0.16 -2.23 16 24 C 0.06 1.31 5.46 86.33 0.47 1.79 16 25 N -0.57 -12.10 4.91 -922.58 -4.53 -16.63 16 26 C 0.03 0.44 9.59 127.69 1.22 1.67 16 27 C 0.06 1.11 5.46 86.32 0.47 1.58 16 28 C -0.09 -2.01 4.68 30.65 0.14 -1.86 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.98 8.12 -2.38 -0.02 0.96 16 33 H 0.11 1.35 7.93 -2.39 -0.02 1.33 16 34 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.05 2.10 5.82 -2.39 -0.01 2.08 16 36 H 0.06 1.82 6.58 -2.39 -0.02 1.81 16 37 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 38 H 0.13 2.61 7.93 -2.39 -0.02 2.59 16 39 H 0.39 14.44 5.76 -92.71 -0.53 13.91 16 40 H 0.28 15.26 8.31 -92.70 -0.77 14.49 16 41 H 0.41 7.76 8.09 -92.71 -0.75 7.01 16 42 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.89 7.66 -2.39 -0.02 1.87 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 47 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 49 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.09 1.38 8.12 -2.38 -0.02 1.36 16 52 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.05 1.38 8.04 -2.39 -0.02 1.37 16 Total: -1.00 -80.57 414.82 -2.59 -83.16 By element: Atomic # 1 Polarization: 44.45 SS G_CDS: -0.44 Total: 44.00 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 7.83 Total: 21.44 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -11.79 Total: -136.56 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.90 Total: 39.88 kcal Total: -80.57 -2.59 -83.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754322636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.131 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds