Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47277 * 2 1 4 4 O 1.21288 * 119.99455 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00464 * 179.97438 * 3 2 1 6 6 C 1.46491 * 120.00056 * 180.02562 * 5 3 2 7 7 H 1.08994 * 109.47507 * 325.00144 * 6 5 3 8 8 C 1.52996 * 109.47168 * 85.00588 * 6 5 3 9 9 C 1.50702 * 109.46957 * 205.00172 * 6 5 3 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 6 5 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 6 5 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 6 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 N 1.46902 * 109.47411 * 180.02562 * 13 12 11 15 15 C 1.46847 * 111.00003 * 45.79175 * 14 13 12 16 16 C 1.53029 * 109.52331 * 185.84134 * 15 14 13 17 17 C 1.53128 * 109.27867 * 300.82168 * 16 15 14 18 18 N 1.46499 * 109.57498 * 177.59218 * 17 16 15 19 19 C 1.36939 * 120.00182 * 85.28224 * 18 17 16 20 20 H 1.08008 * 119.99609 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00086 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00181 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99828 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47344 * 59.99703 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46765 * 299.99456 * 23 21 19 27 27 C 1.53114 * 109.16009 * 57.65586 * 17 16 15 28 28 C 1.46848 * 111.00039 * 170.00529 * 14 13 12 29 29 H 1.09003 * 109.47548 * 59.99740 * 1 2 3 30 30 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47346 * 299.99241 * 1 2 3 32 32 H 1.09001 * 109.47027 * 240.00114 * 2 1 3 33 33 H 1.09003 * 109.47548 * 120.00260 * 2 1 3 34 34 H 0.97003 * 119.99723 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.47307 * 300.00165 * 8 6 5 36 36 H 1.09002 * 109.47575 * 59.99408 * 8 6 5 37 37 H 1.09001 * 109.47551 * 179.97438 * 8 6 5 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 6 39 39 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 40 40 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 41 41 H 1.08998 * 109.47382 * 300.00439 * 13 12 11 42 42 H 1.09005 * 109.46800 * 60.00640 * 13 12 11 43 43 H 1.09001 * 109.45735 * 305.85815 * 15 14 13 44 44 H 1.08995 * 109.45998 * 65.82452 * 15 14 13 45 45 H 1.09001 * 109.50846 * 180.87872 * 16 15 14 46 46 H 1.09000 * 109.50503 * 60.76211 * 16 15 14 47 47 H 1.08997 * 109.51703 * 297.74672 * 17 16 15 48 48 H 0.96996 * 120.00118 * 265.28480 * 18 17 16 49 49 H 0.97000 * 120.00456 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.50313 * 182.41297 * 27 17 16 51 51 H 1.09001 * 109.50762 * 62.28492 * 27 17 16 52 52 H 1.09006 * 109.45686 * 294.17761 * 28 14 13 53 53 H 1.09002 * 109.46139 * 54.14976 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8456 3.0483 0.0011 7 1 3.1733 3.6716 -0.5883 8 6 3.8967 3.5706 1.4382 9 6 5.2273 3.0929 -0.5989 10 8 5.7523 2.0715 -0.9891 11 7 5.8772 4.2686 -0.7076 12 6 7.2179 4.3128 -1.2964 13 6 7.7260 5.7560 -1.3003 14 7 9.0701 5.8004 -1.8913 15 6 9.1288 5.0069 -3.1256 16 6 10.5717 4.9563 -3.6328 17 6 11.0653 6.3817 -3.8963 18 7 12.4649 6.3445 -4.3275 19 6 12.7697 6.1428 -5.6472 20 1 11.9782 6.0114 -6.3702 21 6 14.0959 6.1082 -6.0558 22 7 15.0603 6.2688 -5.1748 23 14 14.5115 5.8337 -7.8562 24 1 13.9124 6.9190 -8.6737 25 1 15.9864 5.8388 -8.0300 26 1 13.9664 4.5243 -8.2959 27 6 10.9485 7.2002 -2.6076 28 6 9.4946 7.1858 -2.1300 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9878 0.9299 0.0005 35 1 2.8974 3.5383 1.8723 36 1 4.5691 2.9472 2.0277 37 1 4.2605 4.5981 1.4388 38 1 5.4573 5.0855 -0.3958 39 1 7.8937 3.6917 -0.7084 40 1 7.1780 3.9385 -2.3193 41 1 7.0504 6.3774 -1.8881 42 1 7.7661 6.1298 -0.2772 43 1 8.7791 3.9945 -2.9233 44 1 8.4935 5.4660 -3.8829 45 1 10.6125 4.3803 -4.5574 46 1 11.2053 4.4848 -2.8816 47 1 10.4562 6.8398 -4.6754 48 1 13.1758 6.4628 -3.6782 49 1 15.9871 6.2449 -5.4604 50 1 11.2581 8.2275 -2.7996 51 1 11.5879 6.7640 -1.8401 52 1 8.8574 7.6346 -2.8921 53 1 9.4107 7.7558 -1.2047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754848377.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -94.296461 kcal Electronic energy + Delta-G solvation = -29289.843920 eV Core-core repulsion = 25195.085411 eV Total energy + Delta-G solvation = -4094.758509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52694 -40.45474 -39.97972 -37.19361 -36.11986 -35.81576 -34.08573 -33.78535 -32.12483 -31.69079 -31.17124 -28.88375 -26.38167 -25.99064 -24.79709 -24.40817 -23.35382 -22.18615 -21.48572 -21.29796 -20.73362 -19.09494 -18.90802 -17.91909 -17.50906 -17.02114 -16.88529 -16.53578 -16.49996 -16.10808 -15.65494 -15.64886 -15.41463 -15.28403 -15.03608 -14.73162 -14.53860 -14.35478 -14.22030 -13.98181 -13.61008 -13.40750 -13.12494 -13.09459 -12.99638 -12.85061 -12.70376 -12.65580 -12.63191 -12.49614 -12.22253 -12.20730 -12.04365 -12.02677 -11.76104 -11.51025 -11.18054 -11.09305 -10.94262 -10.84087 -10.28022 -10.16871 -9.25784 -8.99017 -7.93741 -5.22025 1.41535 1.46026 1.48880 1.54983 1.56249 1.75103 2.33000 2.56014 3.00867 3.38849 3.52737 3.74617 3.80007 3.82607 3.99098 4.01876 4.06788 4.09804 4.20379 4.22715 4.27825 4.34076 4.36599 4.49571 4.55618 4.60965 4.70368 4.71924 4.75256 4.79972 4.86699 4.93626 4.96927 4.97931 5.00667 5.06644 5.12374 5.15332 5.18566 5.26714 5.31302 5.39175 5.44278 5.49449 5.61101 6.09672 6.16193 6.28771 6.38065 6.45316 7.05684 7.17419 7.34201 8.11645 8.34846 9.29564 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.001587 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.728248 B =17636.080870 C =18504.312457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.511 3.489 4 O -0.580 6.580 5 N -0.714 5.714 6 C 0.127 3.873 7 H 0.113 0.887 8 C -0.152 4.152 9 C 0.513 3.487 10 O -0.572 6.572 11 N -0.707 5.707 12 C 0.120 3.880 13 C 0.052 3.948 14 N -0.543 5.543 15 C 0.062 3.938 16 C -0.123 4.123 17 C 0.171 3.829 18 N -0.738 5.738 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.114 4.114 28 C 0.072 3.928 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.415 0.585 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.419 0.581 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.048 0.952 47 H 0.034 0.966 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.064 0.936 51 H 0.058 0.942 52 H 0.040 0.960 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.283 -6.702 16.494 34.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.300 3.700 4 O -0.460 6.460 5 N -0.368 5.368 6 C 0.018 3.982 7 H 0.131 0.869 8 C -0.211 4.211 9 C 0.298 3.702 10 O -0.451 6.451 11 N -0.360 5.360 12 C -0.004 4.004 13 C -0.076 4.076 14 N -0.268 5.268 15 C -0.067 4.067 16 C -0.164 4.164 17 C 0.062 3.938 18 N -0.377 5.377 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.152 4.152 28 C -0.056 4.056 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.253 0.747 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.257 0.743 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.058 0.942 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.137 -6.972 16.348 34.130 hybrid contribution 0.763 0.220 -1.467 1.668 sum -28.374 -6.753 14.881 32.743 Atomic orbital electron populations 1.21532 0.93269 1.02622 1.02005 1.21702 0.98255 0.91494 1.06517 1.21429 0.81333 0.93108 0.74131 1.90687 1.56073 1.47894 1.51330 1.45896 1.07657 1.08121 1.75077 1.20781 0.91820 0.86049 0.99531 0.86950 1.22104 1.03474 1.02800 0.92716 1.20841 0.87690 0.83503 0.78119 1.90722 1.69199 1.34871 1.50358 1.45685 1.17787 1.09983 1.62523 1.21404 0.82821 0.97760 0.98423 1.22248 0.88646 0.94771 1.01898 1.61922 1.25126 1.12454 1.27341 1.22108 0.95815 0.98460 0.90275 1.22104 0.95807 0.99178 0.99317 1.20493 0.84955 0.93767 0.94544 1.42630 1.02546 1.86594 1.05920 1.19573 0.91649 1.39659 0.86390 0.90998 1.25523 0.95723 1.03834 1.01656 1.69807 0.98843 1.58901 1.34452 0.85255 0.76349 0.78138 0.80290 1.20369 1.22112 1.20646 1.21746 0.97275 0.99669 0.96524 1.21999 0.94245 0.88305 1.01047 0.93572 0.89885 0.93099 0.87112 0.86383 0.74738 0.91459 0.91570 0.88609 0.74347 0.91608 0.92231 0.92743 0.87853 0.89976 0.94692 0.93843 0.93343 0.94755 0.79653 0.94081 0.91762 0.92277 0.94203 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 71.98 0.66 -0.72 16 2 C -0.14 -1.20 6.42 29.85 0.19 -1.01 16 3 C 0.51 7.91 7.79 87.66 0.68 8.59 16 4 O -0.58 -13.19 15.65 -3.05 -0.05 -13.23 16 5 N -0.71 -9.82 4.95 -446.12 -2.21 -12.03 16 6 C 0.13 1.65 2.98 44.25 0.13 1.79 16 7 H 0.11 1.55 7.58 -2.39 -0.02 1.53 16 8 C -0.15 -1.36 9.38 71.98 0.68 -0.69 16 9 C 0.51 8.49 7.22 87.66 0.63 9.12 16 10 O -0.57 -14.10 15.84 -3.04 -0.05 -14.15 16 11 N -0.71 -8.64 5.45 -463.06 -2.52 -11.16 16 12 C 0.12 2.01 4.92 86.38 0.43 2.44 16 13 C 0.05 0.77 5.39 86.30 0.46 1.23 16 14 N -0.54 -12.31 4.81 -896.36 -4.31 -16.62 16 15 C 0.06 1.66 4.85 86.32 0.42 2.08 16 16 C -0.12 -4.48 5.68 30.65 0.17 -4.31 16 17 C 0.17 6.78 2.84 45.07 0.13 6.91 16 18 N -0.74 -37.89 5.13 -322.56 -1.65 -39.55 16 19 C -0.24 -13.59 9.93 84.03 0.83 -12.76 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 22 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 23 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 C -0.11 -3.61 5.57 30.65 0.17 -3.44 16 28 C 0.07 1.65 5.42 86.33 0.47 2.12 16 29 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.62 8.10 -2.39 -0.02 0.60 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.42 5.16 7.79 -92.71 -0.72 4.44 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.40 7.57 -2.39 -0.02 0.38 16 38 H 0.42 2.30 7.90 -92.71 -0.73 1.57 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.22 6.21 -2.39 -0.01 1.21 16 41 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 42 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.08 2.08 5.81 -2.39 -0.01 2.07 16 44 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.03 1.40 8.08 -2.39 -0.02 1.39 16 48 H 0.37 20.56 7.80 -92.71 -0.72 19.84 16 49 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 53 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -76.29 421.98 -3.22 -79.50 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -1.26 Total: 30.84 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.53 Total: 7.43 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -10.41 Total: -139.14 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.10 Total: -27.38 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.29 -3.22 -79.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754848377.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.793 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds