Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47022 * 2 1 4 4 C 1.53003 * 109.47177 * 239.99876 * 2 1 3 5 5 N 1.46500 * 109.46812 * 177.65447 * 4 2 1 6 6 C 1.46503 * 119.99714 * 276.65034 * 5 4 2 7 7 C 1.34770 * 120.00353 * 96.65450 * 5 4 2 8 8 O 1.21277 * 119.99714 * 3.74276 * 7 5 4 9 9 C 1.50700 * 120.00045 * 183.74596 * 7 5 4 10 10 H 1.08998 * 110.35507 * 330.44245 * 9 7 5 11 11 C 1.54599 * 110.30793 * 208.29805 * 9 7 5 12 12 C 1.54935 * 102.92195 * 219.12750 * 11 9 7 13 13 N 1.48540 * 103.22816 * 37.41487 * 12 11 9 14 14 C 1.46899 * 111.00046 * 200.27968 * 13 12 11 15 15 C 1.47899 * 105.81853 * 320.79218 * 13 12 11 16 16 H 1.08993 * 109.92268 * 265.97812 * 15 13 12 17 17 C 1.53001 * 109.91559 * 144.68163 * 15 13 12 18 18 N 1.46905 * 109.46953 * 119.99827 * 2 1 3 19 19 C 1.46900 * 110.99877 * 275.82222 * 18 2 1 20 20 C 1.50698 * 109.46696 * 180.02562 * 19 18 2 21 21 O 1.21290 * 120.00690 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99599 * 180.02562 * 20 19 18 23 23 C 1.37100 * 119.99753 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00237 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99998 * 179.97438 * 23 22 20 26 26 N 1.31415 * 119.99954 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99991 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47174 * 59.99828 * 27 25 23 29 29 H 1.48498 * 109.47145 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46959 * 299.99572 * 27 25 23 31 31 H 1.08999 * 109.47435 * 300.00015 * 1 2 3 32 32 H 1.09001 * 109.46950 * 60.00035 * 1 2 3 33 33 H 1.09005 * 109.47113 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46606 * 57.65193 * 4 2 1 35 35 H 1.08996 * 109.46805 * 297.65269 * 4 2 1 36 36 H 1.09004 * 109.47354 * 270.00389 * 6 5 4 37 37 H 1.09004 * 109.47480 * 30.00068 * 6 5 4 38 38 H 1.09000 * 109.47459 * 150.00363 * 6 5 4 39 39 H 1.08999 * 110.72178 * 100.76661 * 11 9 7 40 40 H 1.09000 * 110.72514 * 337.48529 * 11 9 7 41 41 H 1.08998 * 110.66408 * 278.98264 * 12 11 9 42 42 H 1.08998 * 110.66740 * 155.85200 * 12 11 9 43 43 H 1.09005 * 109.47022 * 59.87478 * 14 13 12 44 44 H 1.09000 * 109.46588 * 179.87400 * 14 13 12 45 45 H 1.08998 * 109.47108 * 299.87550 * 14 13 12 46 46 H 1.08999 * 109.47249 * 60.87405 * 17 15 13 47 47 H 1.09003 * 109.46992 * 180.87274 * 17 15 13 48 48 H 1.08994 * 109.47200 * 300.86945 * 17 15 13 49 49 H 1.00900 * 111.00029 * 151.87140 * 18 2 1 50 50 H 1.08991 * 109.47348 * 300.00208 * 19 18 2 51 51 H 1.09005 * 109.47139 * 60.00213 * 19 18 2 52 52 H 0.96992 * 120.00471 * 0.02562 * 22 20 19 53 53 H 0.97001 * 119.99524 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5039 -0.6725 -1.2778 6 6 4.1871 0.5090 -1.8103 7 6 4.2221 -1.7144 -0.8142 8 8 3.6581 -2.7194 -0.4365 9 6 5.7260 -1.6306 -0.7652 10 1 6.0953 -0.9771 -1.5555 11 6 6.3466 -3.0401 -0.9005 12 6 7.5330 -2.9933 0.0949 13 7 6.9964 -2.1938 1.2259 14 6 8.0849 -1.6352 2.0389 15 6 6.1881 -1.1182 0.6116 16 1 6.7951 -0.2213 0.4892 17 6 4.9725 -0.8137 1.4893 18 7 2.0196 -0.6925 1.1995 19 6 2.0639 0.2178 2.3516 20 6 2.5705 -0.5262 3.5603 21 8 2.8651 -1.6994 3.4710 22 7 2.6951 0.1119 4.7410 23 6 3.1555 -0.5651 5.8407 24 1 3.4186 -1.6095 5.7609 25 6 3.2845 0.0928 7.0578 26 7 2.9657 1.3641 7.1546 27 14 3.9124 -0.8294 8.5560 28 1 5.2766 -1.3481 8.2822 29 1 3.9566 0.0906 9.7209 30 1 3.0024 -1.9638 8.8562 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6427 -0.2323 -2.1387 35 1 1.7114 -1.7603 -1.2284 36 1 4.3523 0.3819 -2.8802 37 1 3.5715 1.3923 -1.6402 38 1 5.1460 0.6321 -1.3068 39 1 6.7023 -3.2089 -1.9169 40 1 5.6289 -3.8071 -0.6095 41 1 8.3925 -2.4958 -0.3542 42 1 7.7977 -3.9977 0.4253 43 1 8.7085 -0.9916 1.4184 44 1 7.6641 -1.0527 2.8585 45 1 8.6898 -2.4469 2.4431 46 1 5.3078 -0.4778 2.4705 47 1 4.3740 -0.0314 1.0224 48 1 4.3696 -1.7149 1.6003 49 1 2.9234 -1.1091 1.0329 50 1 2.7320 1.0503 2.1315 51 1 1.0626 0.5988 2.5524 52 1 2.4585 1.0497 4.8128 53 1 3.0562 1.8234 8.0041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755587895.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = -72.617747 kcal Electronic energy + Delta-G solvation = -32926.282657 eV Core-core repulsion = 28832.464207 eV Total energy + Delta-G solvation = -4093.818449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98823 -40.17543 -39.43830 -37.85292 -36.18387 -35.74367 -33.60050 -33.25125 -32.70217 -31.74956 -28.74913 -28.01601 -27.78813 -26.44941 -25.97388 -25.69290 -22.77850 -21.92771 -21.38957 -21.08007 -19.91387 -19.58943 -18.30302 -17.98147 -17.52169 -17.06147 -16.87066 -16.45596 -16.40553 -16.12698 -15.83371 -15.55186 -15.50831 -14.94952 -14.72746 -14.58702 -14.30269 -13.97472 -13.70781 -13.66091 -13.50390 -13.37063 -13.33503 -13.21982 -13.17174 -12.91271 -12.83212 -12.76207 -12.57010 -12.50641 -12.42448 -12.26777 -12.18342 -12.12660 -12.00132 -11.81097 -11.66815 -11.47748 -10.73752 -10.28724 -9.99345 -9.65135 -9.37502 -9.25380 -8.45926 -5.93762 1.37672 1.38738 1.49934 1.56261 1.99733 2.06785 2.28637 2.93453 2.96035 3.20607 3.37093 3.48371 3.54224 3.74288 3.89808 4.04944 4.16961 4.19951 4.22548 4.26084 4.27182 4.34943 4.39322 4.40956 4.43588 4.45909 4.51757 4.55825 4.57614 4.65872 4.69207 4.75647 4.87637 4.90133 4.92986 4.94559 4.96743 4.98461 5.08459 5.23159 5.32148 5.37665 5.41400 5.58949 5.92804 5.94900 6.08978 6.17700 6.34357 6.56888 6.62410 7.14468 7.20024 7.57013 8.14749 8.71574 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.004291 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.131597 B = 6523.325482 C = 8603.053887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.062 3.938 3 H 0.059 0.941 4 C 0.110 3.890 5 N -0.623 5.623 6 C 0.064 3.936 7 C 0.515 3.485 8 O -0.565 6.565 9 C -0.114 4.114 10 H 0.137 0.863 11 C -0.111 4.111 12 C 0.041 3.959 13 N -0.550 5.550 14 C 0.020 3.980 15 C 0.085 3.915 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.698 5.698 19 C 0.063 3.937 20 C 0.441 3.559 21 O -0.610 6.610 22 N -0.574 5.574 23 C -0.328 4.328 24 H 0.073 0.927 25 C -0.011 4.011 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.273 1.273 29 H -0.267 1.267 30 H -0.275 1.275 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.028 0.972 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.359 0.641 50 H 0.055 0.945 51 H 0.099 0.901 52 H 0.394 0.606 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 4.638 -23.252 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.077 0.923 4 C -0.012 4.012 5 N -0.357 5.357 6 C -0.077 4.077 7 C 0.304 3.696 8 O -0.443 6.443 9 C -0.136 4.136 10 H 0.155 0.845 11 C -0.149 4.149 12 C -0.086 4.086 13 N -0.275 5.275 14 C -0.128 4.128 15 C -0.024 4.024 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.341 5.341 19 C -0.070 4.070 20 C 0.228 3.772 21 O -0.495 6.495 22 N -0.212 5.212 23 C -0.458 4.458 24 H 0.091 0.909 25 C -0.210 4.210 26 N -0.562 5.562 27 Si 0.812 3.188 28 H -0.198 1.198 29 H -0.191 1.191 30 H -0.200 1.200 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.187 0.813 50 H 0.073 0.927 51 H 0.117 0.883 52 H 0.228 0.772 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.253 2.886 -22.457 23.489 hybrid contribution 1.025 0.990 0.915 1.694 sum 7.278 3.876 -21.542 23.066 Atomic orbital electron populations 1.21742 0.93043 1.01996 1.02520 1.22133 0.97179 0.96368 0.89179 0.92337 1.21780 0.79208 1.02208 0.98052 1.48067 1.06797 1.18273 1.62539 1.22174 0.98473 0.86676 1.00379 1.20838 0.90541 0.82553 0.75648 1.90764 1.73028 1.32522 1.47948 1.22404 0.91114 1.01011 0.99063 0.84499 1.22518 0.97028 0.94623 1.00765 1.23278 0.96402 0.98982 0.89975 1.64563 1.21390 1.20619 1.20906 1.22487 0.92883 0.99863 0.97589 1.22233 0.94607 0.94170 0.91390 0.89942 1.22061 0.97875 1.00920 0.98726 1.60385 1.37033 1.32995 1.03641 1.21577 1.01668 0.93740 0.89972 1.20757 0.83184 0.88041 0.85243 1.90545 1.55347 1.18248 1.85396 1.41879 1.58682 1.12752 1.07912 1.19547 1.41816 0.96045 0.88393 0.90897 1.25957 0.97346 0.96627 1.01087 1.69666 1.48726 1.09863 1.27901 0.85059 0.78669 0.77900 0.77124 1.19841 1.19081 1.20015 0.93177 0.89141 0.93454 0.85788 0.91483 0.89514 0.89295 0.90354 0.87408 0.92298 0.90749 0.89911 0.92965 0.93428 0.90485 0.95312 0.92293 0.92635 0.81311 0.92685 0.88345 0.77217 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.41 71.98 0.68 -2.35 16 2 C 0.06 1.57 2.88 44.92 0.13 1.70 16 3 H 0.06 1.27 7.72 -2.39 -0.02 1.26 16 4 C 0.11 2.43 5.14 86.38 0.44 2.87 16 5 N -0.62 -13.22 2.19 -846.75 -1.85 -15.08 16 6 C 0.06 0.71 9.93 127.77 1.27 1.98 16 7 C 0.52 14.68 3.81 87.66 0.33 15.01 16 8 O -0.56 -22.46 13.60 -3.02 -0.04 -22.50 16 9 C -0.11 -2.53 2.47 -10.66 -0.03 -2.55 16 10 H 0.14 1.77 6.50 -2.39 -0.02 1.76 16 11 C -0.11 -2.47 6.55 31.80 0.21 -2.26 16 12 C 0.04 0.87 6.56 86.65 0.57 1.44 16 13 N -0.55 -16.00 5.18 -884.06 -4.58 -20.58 16 14 C 0.02 0.50 9.41 127.69 1.20 1.70 16 15 C 0.08 2.28 2.95 45.06 0.13 2.42 16 16 H 0.08 1.76 7.69 -2.39 -0.02 1.74 16 17 C -0.14 -5.09 5.56 71.98 0.40 -4.69 16 18 N -0.70 -26.16 5.74 -495.57 -2.85 -29.01 16 19 C 0.06 2.46 5.10 85.56 0.44 2.90 16 20 C 0.44 22.83 6.98 87.66 0.61 23.44 16 21 O -0.61 -36.99 14.28 -3.06 -0.04 -37.04 16 22 N -0.57 -31.29 5.29 -306.98 -1.62 -32.92 16 23 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 24 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 26 N -0.92 -51.11 13.05 21.66 0.28 -50.83 16 27 Si 0.99 44.93 29.55 68.60 2.03 46.96 16 28 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 30 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 31 H 0.05 1.20 7.40 -2.39 -0.02 1.19 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 34 H 0.12 1.63 8.12 -2.39 -0.02 1.61 16 35 H 0.07 1.94 7.19 -2.39 -0.02 1.92 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.74 7.98 -2.38 -0.02 0.72 16 38 H 0.08 0.79 6.24 -2.39 -0.01 0.77 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.79 6.88 -2.39 -0.02 1.78 16 41 H 0.07 1.14 8.00 -2.39 -0.02 1.12 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 0.99 7.99 -2.38 -0.02 0.97 16 44 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.94 5.40 -2.39 -0.01 1.93 16 48 H 0.05 2.61 4.47 -2.39 -0.01 2.60 16 49 H 0.36 14.24 1.32 -89.69 -0.12 14.12 16 50 H 0.06 1.91 7.71 -2.39 -0.02 1.89 16 51 H 0.10 3.52 7.38 -2.38 -0.02 3.50 16 52 H 0.39 20.36 7.90 -92.71 -0.73 19.63 16 53 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -83.75 398.61 -0.94 -84.69 By element: Atomic # 1 Polarization: 53.56 SS G_CDS: 0.07 Total: 53.63 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 7.67 Total: 22.66 kcal Atomic # 7 Polarization: -137.79 SS G_CDS: -10.62 Total: -148.41 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -0.08 Total: -59.54 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -83.75 -0.94 -84.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755587895.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.070 kcal (2) G-P(sol) polarization free energy of solvation -83.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds