Wall clock time and date at job start Sat Apr 11 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47637 * 2 1 4 4 N 1.46501 * 109.46973 * 239.99494 * 2 1 3 5 5 C 1.34784 * 119.99660 * 84.73117 * 4 2 1 6 6 O 1.21279 * 119.99766 * 0.26631 * 5 4 2 7 7 C 1.50699 * 119.99803 * 180.27777 * 5 4 2 8 8 C 1.52997 * 109.46951 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47370 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47370 * 179.97438 * 9 8 7 11 11 N 1.46502 * 109.47008 * 180.02562 * 10 9 8 12 12 C 1.34786 * 119.99818 * 179.97438 * 11 10 9 13 13 N 1.34773 * 119.99787 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99865 * 0.02562 * 12 11 10 15 15 C 1.52998 * 109.47041 * 120.00195 * 2 1 3 16 16 C 1.53035 * 109.46562 * 60.06376 * 15 2 1 17 17 C 1.53188 * 109.31720 * 178.61554 * 16 15 2 18 18 N 1.46926 * 108.77607 * 54.63509 * 17 16 15 19 19 C 1.36933 * 120.63093 * 126.41383 * 18 17 16 20 20 H 1.08003 * 120.00039 * 331.80993 * 19 18 17 21 21 C 1.38810 * 120.00187 * 151.80755 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08690 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.08561 * 21 19 18 24 24 H 1.48496 * 109.47448 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47303 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47192 * 300.00241 * 23 21 19 27 27 C 1.46928 * 118.73941 * 306.39285 * 18 17 16 28 28 C 1.53042 * 109.45933 * 299.99541 * 15 2 1 29 29 H 1.08999 * 109.47637 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46893 * 300.00384 * 1 2 3 31 31 H 1.08999 * 109.47026 * 59.99885 * 1 2 3 32 32 H 0.96997 * 120.00699 * 265.00185 * 4 2 1 33 33 H 1.09003 * 109.46989 * 299.99396 * 7 5 4 34 34 H 1.08998 * 109.47296 * 59.99573 * 7 5 4 35 35 H 1.09003 * 109.47102 * 299.99719 * 8 7 5 36 36 H 1.09006 * 109.47446 * 59.99659 * 8 7 5 37 37 H 1.09003 * 109.47003 * 300.00054 * 9 8 7 38 38 H 1.08998 * 109.46863 * 59.99974 * 9 8 7 39 39 H 1.09003 * 109.47102 * 299.99993 * 10 9 8 40 40 H 1.08998 * 109.47148 * 60.00149 * 10 9 8 41 41 H 0.96997 * 120.00553 * 359.97438 * 11 10 9 42 42 H 0.97004 * 119.99890 * 0.02562 * 13 12 11 43 43 H 0.96997 * 119.99691 * 179.97438 * 13 12 11 44 44 H 1.09005 * 109.46383 * 180.02562 * 15 2 1 45 45 H 1.09002 * 109.49755 * 298.57182 * 16 15 2 46 46 H 1.09006 * 109.49523 * 58.66038 * 16 15 2 47 47 H 1.08994 * 109.58686 * 294.84925 * 17 16 15 48 48 H 1.09002 * 109.70590 * 174.49310 * 17 16 15 49 49 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.58201 * 293.82306 * 27 18 17 51 51 H 1.08999 * 109.58585 * 173.39127 * 27 18 17 52 52 H 1.08997 * 109.50089 * 301.33736 * 28 15 2 53 53 H 1.09000 * 109.49943 * 61.40433 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1961 5 6 2.1418 -0.0197 -2.3585 6 8 1.8533 1.1570 -2.4130 7 6 2.6381 -0.7317 -3.5905 8 6 2.6839 0.2498 -4.7632 9 6 3.1884 -0.4728 -6.0138 10 6 3.2335 0.5086 -7.1866 11 7 3.7160 -0.1835 -8.3843 12 6 3.8381 0.4871 -9.5471 13 7 4.2825 -0.1495 -10.6487 14 8 3.5482 1.6666 -9.6018 15 6 2.0399 -0.7213 1.2492 16 6 1.5310 -2.1645 1.2482 17 6 2.0718 -2.8934 2.4823 18 7 1.7085 -2.1263 3.6816 19 6 1.0454 -2.7258 4.7189 20 1 0.3978 -3.5694 4.5303 21 6 1.2054 -2.2495 6.0128 22 7 2.2195 -1.4625 6.3036 23 14 -0.0184 -2.7253 7.3414 24 1 -0.0267 -4.2016 7.5012 25 1 0.3729 -2.0901 8.6254 26 1 -1.3750 -2.2618 6.9537 27 6 2.0705 -0.7039 3.7470 28 6 1.5297 0.0004 2.4986 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6319 -1.1526 33 1 3.6382 -1.1239 -3.4053 34 1 1.9642 -1.5539 -3.8313 35 1 1.6837 0.6417 -4.9482 36 1 3.3576 1.0723 -4.5226 37 1 4.1886 -0.8644 -5.8285 38 1 2.5150 -1.2954 -6.2546 39 1 2.2331 0.8998 -7.3718 40 1 3.9066 1.3315 -6.9461 41 1 3.9477 -1.1244 -8.3405 42 1 4.5141 -1.0905 -10.6048 43 1 4.3700 0.3330 -11.4855 44 1 3.1300 -0.7208 1.2493 45 1 0.4413 -2.1661 1.2732 46 1 1.8754 -2.6711 0.3465 47 1 3.1568 -2.9722 2.4138 48 1 1.6360 -3.8908 2.5405 49 1 2.3312 -1.1293 7.2077 50 1 3.1554 -0.6042 3.7816 51 1 1.6316 -0.2557 4.6384 52 1 1.8731 1.0348 2.4871 53 1 0.4400 -0.0210 2.5117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755848872.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:24 Heat of formation + Delta-G solvation = -105.200237 kcal Electronic energy + Delta-G solvation = -29261.894634 eV Core-core repulsion = 25166.663302 eV Total energy + Delta-G solvation = -4095.231332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07235 -40.79846 -39.50024 -37.15147 -36.66118 -34.95699 -34.43663 -34.07955 -32.78760 -31.44614 -30.61474 -29.61416 -27.13616 -25.69813 -24.58239 -23.85773 -22.50616 -22.24349 -21.80661 -21.06695 -20.11586 -19.16943 -18.60971 -18.24528 -17.83075 -17.17491 -17.02563 -16.61445 -16.36704 -15.77032 -15.72820 -15.54817 -15.41118 -15.34434 -15.22591 -14.86229 -14.64364 -14.25299 -14.08041 -13.89841 -13.56020 -13.28182 -13.03960 -12.93960 -12.88733 -12.63202 -12.57592 -12.47541 -12.38982 -12.14098 -12.05428 -11.94826 -11.63822 -11.58071 -11.51342 -11.50749 -11.16786 -10.94265 -10.74141 -10.72991 -10.49199 -9.99401 -9.95775 -8.64146 -7.85021 -5.30048 1.47487 1.50179 1.56421 1.77539 1.96714 2.17159 2.34145 2.53048 3.29616 3.66981 3.72492 3.80304 3.84776 3.90572 3.94529 4.06660 4.09242 4.36650 4.40225 4.44166 4.45582 4.56699 4.63192 4.65123 4.76164 4.81193 4.82711 4.86992 4.91749 4.96006 5.00502 5.06400 5.07870 5.21175 5.25676 5.30929 5.35330 5.36069 5.43637 5.46221 5.52250 5.59956 5.63414 5.69229 5.82680 5.92296 6.04919 6.41897 6.69609 7.13648 7.17918 7.39724 7.66834 7.90807 8.41742 9.20895 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.040019 B = 0.001456 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.491046 B =19230.691651 C =19471.654619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.064 0.936 4 N -0.715 5.715 5 C 0.503 3.497 6 O -0.592 6.592 7 C -0.130 4.130 8 C -0.101 4.101 9 C -0.113 4.113 10 C 0.135 3.865 11 N -0.731 5.731 12 C 0.693 3.307 13 N -0.848 5.848 14 O -0.654 6.654 15 C -0.073 4.073 16 C -0.114 4.114 17 C 0.139 3.861 18 N -0.610 5.610 19 C -0.262 4.262 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.279 1.279 27 C 0.179 3.821 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.413 0.587 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.416 0.584 42 H 0.416 0.584 43 H 0.419 0.581 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.013 0.987 48 H 0.054 0.946 49 H 0.248 0.752 50 H -0.007 1.007 51 H 0.049 0.951 52 H 0.059 0.941 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.770 -5.249 -30.532 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.082 0.918 4 N -0.367 5.367 5 C 0.292 3.708 6 O -0.473 6.473 7 C -0.169 4.169 8 C -0.139 4.139 9 C -0.151 4.151 10 C 0.010 3.990 11 N -0.388 5.388 12 C 0.391 3.609 13 N -0.417 5.417 14 O -0.537 6.537 15 C -0.093 4.093 16 C -0.153 4.153 17 C 0.013 3.987 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.792 3.208 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.205 1.205 27 C 0.053 3.947 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.251 0.749 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.253 0.747 42 H 0.247 0.753 43 H 0.252 0.748 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.031 0.969 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.011 0.989 51 H 0.068 0.932 52 H 0.077 0.923 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.337 -3.437 -30.283 30.660 hybrid contribution -0.088 -0.673 1.126 1.315 sum 3.249 -4.110 -29.157 29.624 Atomic orbital electron populations 1.22155 0.95205 1.02610 1.01436 1.20741 0.94178 0.96008 0.83954 0.91819 1.46150 1.66759 1.14810 1.09018 1.21528 0.76500 0.87019 0.85761 1.90694 1.52177 1.18494 1.85942 1.21705 1.05142 0.99668 0.90429 1.21168 1.01717 0.97757 0.93301 1.21673 1.03837 0.97874 0.91672 1.21178 0.98639 0.95523 0.83675 1.44929 1.71217 1.14567 1.08088 1.16325 0.78132 0.84487 0.81963 1.42797 1.72191 1.15785 1.10934 1.90953 1.59599 1.17300 1.85849 1.21148 0.99725 0.95686 0.92695 1.21967 1.00866 0.94520 0.97937 1.21091 0.96213 0.94578 0.86775 1.44297 1.66930 1.05755 1.16363 1.19497 1.18980 1.14209 0.86519 0.91503 1.25765 0.98635 1.01037 0.99155 1.70175 1.29642 1.39096 1.19317 0.85400 0.79137 0.77999 0.78275 1.20000 1.22281 1.20531 1.20540 0.94711 0.84001 0.95481 1.22063 1.00633 0.98309 0.95296 0.91240 0.91991 0.93476 0.74886 0.86154 0.85940 0.92673 0.92823 0.89043 0.88933 0.93270 0.93353 0.74704 0.75335 0.74843 0.91669 0.91969 0.89390 0.96895 0.92708 0.94253 0.98916 0.93226 0.92269 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 8.78 71.98 0.63 -3.34 16 2 C 0.16 4.00 2.40 44.99 0.11 4.11 16 3 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 4 N -0.71 -13.88 5.00 -442.54 -2.21 -16.10 16 5 C 0.50 10.53 7.79 87.66 0.68 11.22 16 6 O -0.59 -18.36 15.65 -3.03 -0.05 -18.41 16 7 C -0.13 -1.35 5.70 29.85 0.17 -1.18 16 8 C -0.10 -1.29 4.50 30.59 0.14 -1.16 16 9 C -0.11 -0.73 5.33 30.59 0.16 -0.57 16 10 C 0.13 1.74 5.67 86.38 0.49 2.23 16 11 N -0.73 -7.11 5.56 -478.53 -2.66 -9.77 16 12 C 0.69 11.07 8.84 179.05 1.58 12.65 16 13 N -0.85 -5.11 8.88 -184.75 -1.64 -6.75 16 14 O -0.65 -18.40 17.18 -3.97 -0.07 -18.47 16 15 C -0.07 -2.13 2.14 -10.77 -0.02 -2.15 16 16 C -0.11 -3.18 4.81 30.67 0.15 -3.03 16 17 C 0.14 5.26 6.52 86.36 0.56 5.82 16 18 N -0.61 -29.65 2.99 -699.10 -2.09 -31.75 16 19 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 20 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 21 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 22 N -0.94 -55.39 11.20 21.65 0.24 -55.15 16 23 Si 0.96 44.56 29.59 68.60 2.03 46.59 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 C 0.18 8.49 5.30 86.36 0.46 8.95 16 28 C -0.12 -4.48 4.97 30.67 0.15 -4.33 16 29 H 0.07 1.63 6.46 -2.39 -0.02 1.62 16 30 H 0.06 1.68 6.46 -2.38 -0.02 1.66 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 5.62 6.84 -92.71 -0.63 4.98 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 37 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.42 0.69 8.49 -92.71 -0.79 -0.09 16 42 H 0.42 -0.69 8.84 -92.71 -0.82 -1.51 16 43 H 0.42 2.16 8.93 -92.71 -0.83 1.33 16 44 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.06 1.82 6.51 -2.39 -0.02 1.80 16 46 H 0.09 1.71 6.46 -2.38 -0.02 1.70 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 51 H 0.05 2.72 6.06 -2.39 -0.01 2.70 16 52 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.06 2.17 6.51 -2.39 -0.02 2.16 16 Total: -1.00 -82.99 413.65 -2.09 -85.08 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -2.12 Total: 11.24 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.49 Total: 13.49 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -8.36 Total: -119.51 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.12 Total: -36.88 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.99 -2.09 -85.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755848872.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.123 kcal (2) G-P(sol) polarization free energy of solvation -82.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds