Wall clock time and date at job start Sat Apr 11 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99777 * 2 1 4 4 C 1.34782 * 120.00326 * 180.02562 * 2 1 3 5 5 O 1.21282 * 119.99533 * 359.97438 * 4 2 1 6 6 C 1.50698 * 119.99918 * 180.02562 * 4 2 1 7 7 N 1.46898 * 109.47118 * 173.81240 * 6 4 2 8 8 C 1.46840 * 111.00348 * 169.41717 * 7 6 4 9 9 C 1.53041 * 109.52342 * 185.83950 * 8 7 6 10 10 C 1.53119 * 109.28050 * 300.81811 * 9 8 7 11 11 N 1.46494 * 109.57574 * 177.58756 * 10 9 8 12 12 C 1.34780 * 119.99512 * 85.29175 * 11 10 9 13 13 O 1.21583 * 120.00514 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99970 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00321 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47433 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47287 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47164 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99631 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99715 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99857 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00306 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46864 * 90.00088 * 22 20 18 24 24 H 1.48501 * 109.47241 * 210.00127 * 22 20 18 25 25 H 1.48498 * 109.46757 * 330.00380 * 22 20 18 26 26 C 1.53125 * 109.15682 * 57.65799 * 10 9 8 27 27 C 1.46850 * 110.99930 * 293.63280 * 7 6 4 28 28 H 1.09000 * 109.47311 * 270.00080 * 1 2 3 29 29 H 1.09003 * 109.47077 * 30.00059 * 1 2 3 30 30 H 1.09001 * 109.46895 * 149.99821 * 1 2 3 31 31 H 1.09000 * 109.47223 * 269.99861 * 3 2 1 32 32 H 1.08993 * 109.47108 * 30.00264 * 3 2 1 33 33 H 1.09003 * 109.47005 * 149.99789 * 3 2 1 34 34 H 1.09005 * 109.47394 * 293.81256 * 6 4 2 35 35 H 1.08994 * 109.47210 * 53.81279 * 6 4 2 36 36 H 1.09002 * 109.46161 * 305.85324 * 8 7 6 37 37 H 1.08997 * 109.46184 * 65.82203 * 8 7 6 38 38 H 1.09005 * 109.50050 * 180.87717 * 9 8 7 39 39 H 1.09005 * 109.50512 * 60.76489 * 9 8 7 40 40 H 1.08995 * 109.52343 * 297.75693 * 10 9 8 41 41 H 0.96997 * 120.01004 * 265.28959 * 11 10 9 42 42 H 0.96998 * 119.99712 * 359.97438 * 14 12 11 43 43 H 1.09002 * 109.47204 * 300.00593 * 15 14 12 44 44 H 1.09003 * 109.46838 * 59.99638 * 15 14 12 45 45 H 1.09002 * 109.47188 * 300.00088 * 16 15 14 46 46 H 1.09003 * 109.47305 * 60.00046 * 16 15 14 47 47 H 1.09002 * 109.46876 * 300.00032 * 17 16 15 48 48 H 1.09003 * 109.47112 * 59.99681 * 17 16 15 49 49 H 0.96998 * 120.00131 * 179.97438 * 21 20 18 50 50 H 1.08995 * 109.50146 * 182.40576 * 26 10 9 51 51 H 1.08991 * 109.50664 * 62.28320 * 26 10 9 52 52 H 1.09008 * 109.45658 * 294.16900 * 27 7 6 53 53 H 1.08999 * 109.46658 * 54.14840 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1671 0.0001 7 7 4.1356 -2.5441 0.1486 8 6 5.5816 -2.6177 -0.0961 9 6 6.0298 -4.0809 -0.0766 10 6 5.6918 -4.6951 1.2847 11 7 6.0657 -6.1115 1.2906 12 6 7.3282 -6.4738 1.5930 13 8 8.1568 -5.6251 1.8605 14 7 7.6725 -7.7768 1.5980 15 6 9.0449 -8.1706 1.9261 16 6 9.1678 -9.6942 1.8606 17 6 10.6009 -10.1056 2.2039 18 6 10.7221 -11.6063 2.1387 19 1 9.8628 -12.2066 1.8788 20 6 11.9298 -12.2128 2.4119 21 7 12.0357 -13.5224 2.3545 22 14 13.4159 -11.1744 2.8621 23 1 13.4602 -10.9858 4.3344 24 1 14.6538 -11.8611 2.4135 25 1 13.3149 -9.8509 2.1963 26 6 4.1872 -4.5621 1.5363 27 6 3.7924 -3.0850 1.4700 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.0096 -0.7515 -0.9397 35 1 4.0089 -0.5609 0.8300 36 1 5.8079 -2.1815 -1.0691 37 1 6.1100 -2.0656 0.6811 38 1 7.1058 -4.1341 -0.2428 39 1 5.5120 -4.6307 -0.8626 40 1 6.2397 -4.1703 2.0672 41 1 5.4049 -6.7886 1.0769 42 1 7.0116 -8.4538 1.3843 43 1 9.7332 -7.7191 1.2117 44 1 9.2901 -7.8296 2.9320 45 1 8.4796 -10.1454 2.5754 46 1 8.9225 -10.0357 0.8549 47 1 11.2895 -9.6544 1.4894 48 1 10.8459 -9.7642 3.2097 49 1 12.8854 -13.9492 2.5463 50 1 3.9467 -4.9592 2.5225 51 1 3.6404 -5.1194 0.7757 52 1 4.3293 -2.5307 2.2399 53 1 2.7192 -2.9883 1.6345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345422674.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:08 Heat of formation + Delta-G solvation = -92.059633 kcal Electronic energy + Delta-G solvation = -29181.809149 eV Core-core repulsion = 25087.147636 eV Total energy + Delta-G solvation = -4094.661513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.40338 -40.91717 -39.40151 -37.10858 -36.49945 -35.95476 -35.12874 -33.52749 -32.44885 -31.86529 -29.79970 -28.80503 -27.94470 -26.22284 -24.78168 -24.26019 -23.54755 -22.22670 -21.66885 -21.03073 -20.21010 -19.22240 -18.84679 -18.07785 -17.63700 -17.20024 -16.98418 -16.79555 -16.43406 -16.18443 -15.83079 -15.70733 -15.45292 -15.28830 -15.03085 -14.75521 -14.57989 -14.39706 -14.08146 -13.96023 -13.78509 -13.62392 -13.45731 -13.40885 -13.07218 -12.92579 -12.73248 -12.72311 -12.68258 -12.46192 -12.19438 -11.92272 -11.84431 -11.76845 -11.58309 -11.55479 -11.32135 -11.23074 -10.77191 -10.75168 -10.31794 -9.74516 -9.64749 -9.29575 -8.28480 -6.32390 1.37822 1.39403 1.51502 1.63279 1.72259 1.98609 2.16993 2.37469 2.90056 3.07453 3.30712 3.57368 3.72314 3.87904 4.03292 4.12178 4.18056 4.21713 4.23730 4.29801 4.40187 4.42889 4.46169 4.48407 4.50984 4.52903 4.60350 4.69217 4.80300 4.89397 4.90489 4.91991 4.93084 4.94734 4.95597 5.02188 5.05450 5.14619 5.27928 5.43598 5.51533 5.54410 5.57626 5.58786 5.66476 5.91590 6.03116 6.07010 6.28597 6.39543 6.75568 7.12536 7.21659 7.32590 7.60444 8.88002 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.042899 B = 0.001433 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.541556 B =19541.486707 C =19924.751089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.627 5.627 3 C 0.069 3.931 4 C 0.504 3.496 5 O -0.566 6.566 6 C 0.041 3.959 7 N -0.537 5.537 8 C 0.067 3.933 9 C -0.122 4.122 10 C 0.166 3.834 11 N -0.729 5.729 12 C 0.700 3.300 13 O -0.637 6.637 14 N -0.734 5.734 15 C 0.148 3.852 16 C -0.099 4.099 17 C -0.012 4.012 18 C -0.531 4.531 19 H 0.037 0.963 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.248 1.248 26 C -0.111 4.111 27 C 0.063 3.937 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.410 0.590 42 H 0.410 0.590 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.021 0.979 48 H 0.020 0.980 49 H 0.266 0.734 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.038 0.962 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.195 35.917 -5.590 43.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.361 5.361 3 C -0.072 4.072 4 C 0.292 3.708 5 O -0.445 6.445 6 C -0.090 4.090 7 N -0.263 5.263 8 C -0.061 4.061 9 C -0.161 4.161 10 C 0.060 3.940 11 N -0.385 5.385 12 C 0.399 3.601 13 O -0.518 6.518 14 N -0.390 5.390 15 C 0.023 3.977 16 C -0.137 4.137 17 C -0.050 4.050 18 C -0.569 4.569 19 H 0.055 0.945 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.171 1.171 26 C -0.149 4.149 27 C -0.065 4.065 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.246 0.754 42 H 0.246 0.754 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.096 0.904 52 H 0.056 0.944 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.886 35.716 -5.673 43.340 hybrid contribution 0.560 -0.509 0.615 0.975 sum -23.325 35.207 -5.058 42.535 Atomic orbital electron populations 1.21687 0.78865 1.03353 1.02056 1.47968 1.07673 1.07031 1.73440 1.22107 0.97798 0.83962 1.03382 1.21038 0.90922 0.83219 0.75603 1.90684 1.70890 1.32507 1.50370 1.22064 0.90961 0.90754 1.05201 1.61549 1.14490 1.19393 1.30822 1.22028 0.85883 0.95968 1.02217 1.21916 1.00545 0.96208 0.97433 1.20849 0.95541 0.80017 0.97570 1.45066 1.09506 1.09196 1.74701 1.16136 0.83127 0.82859 0.77931 1.90871 1.51382 1.51213 1.58366 1.45078 1.13354 1.05815 1.74729 1.21124 0.81633 0.94943 0.99998 1.21475 0.98006 0.92373 1.01887 1.19464 0.94583 0.94252 0.96687 1.21474 0.96624 0.92309 1.46538 0.94460 1.25970 1.02319 0.95975 0.94834 1.70059 1.26855 1.10792 1.51446 0.85702 0.78106 0.79794 0.79338 1.19242 1.20982 1.17121 1.21737 0.93166 0.96993 1.02994 1.22029 1.01258 0.94548 0.88649 0.92572 0.88637 0.92698 0.91045 0.89288 0.89716 0.85610 0.89769 0.88711 0.93997 0.92455 0.90928 0.91629 0.75384 0.75387 0.92767 0.92739 0.91767 0.91773 0.96052 0.96171 0.92521 0.90168 0.90427 0.94359 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.44 127.77 1.33 2.04 16 2 N -0.63 -5.91 3.27 -871.88 -2.85 -8.76 16 3 C 0.07 0.08 10.27 127.77 1.31 1.39 16 4 C 0.50 7.69 7.21 87.66 0.63 8.32 16 5 O -0.57 -13.79 14.28 -3.04 -0.04 -13.84 16 6 C 0.04 0.41 4.18 85.56 0.36 0.77 16 7 N -0.54 -8.17 4.35 -900.92 -3.92 -12.09 16 8 C 0.07 0.94 5.46 86.33 0.47 1.41 16 9 C -0.12 -2.27 5.68 30.65 0.17 -2.10 16 10 C 0.17 3.26 2.52 45.07 0.11 3.38 16 11 N -0.73 -15.24 5.09 -457.44 -2.33 -17.56 16 12 C 0.70 20.35 8.54 179.05 1.53 21.88 16 13 O -0.64 -23.98 16.01 -3.98 -0.06 -24.05 16 14 N -0.73 -19.92 5.56 -478.54 -2.66 -22.58 16 15 C 0.15 4.86 5.67 86.38 0.49 5.35 16 16 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 17 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 18 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 19 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 20 C 0.01 0.34 5.47 84.65 0.46 0.81 16 21 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 22 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 C -0.11 -1.80 5.57 30.65 0.17 -1.63 16 27 C 0.06 1.03 5.12 86.33 0.44 1.47 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.27 8.07 -2.39 -0.02 0.25 16 30 H 0.05 0.73 7.42 -2.39 -0.02 0.71 16 31 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.09 -0.14 8.07 -2.39 -0.02 -0.16 16 33 H 0.08 -0.08 6.27 -2.39 -0.01 -0.10 16 34 H 0.13 0.75 7.98 -2.38 -0.02 0.74 16 35 H 0.08 0.50 7.04 -2.39 -0.02 0.49 16 36 H 0.09 1.04 8.01 -2.39 -0.02 1.02 16 37 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 41 H 0.41 6.25 8.62 -92.71 -0.80 5.46 16 42 H 0.41 8.66 8.49 -92.71 -0.79 7.87 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 48 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 49 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 53 H 0.08 1.51 6.05 -2.39 -0.01 1.49 16 Total: -1.00 -81.46 418.18 -2.41 -83.86 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.74 Total: 19.01 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 8.02 Total: 8.91 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -11.46 Total: -120.51 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.11 Total: -37.89 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -81.46 -2.41 -83.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345422674.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.196 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds