Wall clock time and date at job start Sat Apr 11 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 110.99902 * 2 1 4 4 C 1.46897 * 111.00081 * 123.95292 * 2 1 3 5 5 C 1.52995 * 109.47168 * 66.04655 * 4 2 1 6 6 C 1.53007 * 109.47446 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47233 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99779 * 269.99549 * 7 6 5 9 9 C 1.50692 * 109.47238 * 270.00414 * 8 7 6 10 10 H 1.08001 * 120.00066 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00291 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99881 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00407 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46898 * 60.00145 * 13 11 9 15 15 H 1.48505 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47221 * 299.99908 * 13 11 9 17 17 C 1.34774 * 120.00209 * 90.00213 * 7 6 5 18 18 O 1.21289 * 119.99735 * 359.97438 * 17 7 6 19 19 C 1.50693 * 119.99942 * 180.02562 * 17 7 6 20 20 N 1.46509 * 109.47014 * 179.97438 * 19 17 7 21 21 C 1.34779 * 119.99795 * 180.02562 * 20 19 17 22 22 O 1.21578 * 120.00186 * 359.97438 * 21 20 19 23 23 N 1.34780 * 119.99572 * 179.97438 * 21 20 19 24 24 C 1.47024 * 125.64847 * 359.68614 * 23 21 20 25 25 C 1.54327 * 107.26851 * 181.32598 * 24 23 21 26 26 C 1.55154 * 102.94372 * 22.19158 * 25 24 23 27 27 C 1.47426 * 125.64645 * 179.97438 * 23 21 20 28 28 H 1.09002 * 109.47573 * 296.04728 * 1 2 3 29 29 H 1.09007 * 109.47159 * 56.04836 * 1 2 3 30 30 H 1.09001 * 109.47272 * 176.04595 * 1 2 3 31 31 H 1.09000 * 109.47215 * 183.95136 * 3 2 1 32 32 H 1.08994 * 109.47135 * 303.95376 * 3 2 1 33 33 H 1.08997 * 109.47273 * 63.95523 * 3 2 1 34 34 H 1.09002 * 109.47310 * 306.04696 * 4 2 1 35 35 H 1.09000 * 109.47464 * 186.05001 * 4 2 1 36 36 H 1.09002 * 109.47496 * 60.00391 * 5 4 2 37 37 H 1.08996 * 109.47296 * 300.00017 * 5 4 2 38 38 H 1.08997 * 109.46927 * 60.00000 * 6 5 4 39 39 H 1.09005 * 109.46486 * 300.00002 * 6 5 4 40 40 H 1.08995 * 109.46931 * 30.00394 * 8 7 6 41 41 H 1.08999 * 109.47020 * 149.99995 * 8 7 6 42 42 H 0.96991 * 120.00534 * 179.97438 * 12 11 9 43 43 H 1.08999 * 109.47855 * 59.99748 * 19 17 7 44 44 H 1.08995 * 109.46982 * 299.99024 * 19 17 7 45 45 H 0.97004 * 119.99661 * 359.97438 * 20 19 17 46 46 H 1.08997 * 109.88062 * 300.74548 * 24 23 21 47 47 H 1.09000 * 109.88248 * 61.90735 * 24 23 21 48 48 H 1.09005 * 110.71834 * 263.82776 * 25 24 23 49 49 H 1.08999 * 110.71553 * 140.55738 * 25 24 23 50 50 H 1.09000 * 111.00849 * 206.42090 * 26 25 24 51 51 H 1.09001 * 111.00585 * 82.56882 * 26 25 24 52 52 H 1.09004 * 110.36499 * 274.44757 * 27 23 21 53 53 H 1.08998 * 110.36482 * 36.65820 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2425 0.9704 6 6 2.1792 -3.0403 2.1555 7 7 1.8312 -4.4543 1.9951 8 6 0.5743 -4.9664 2.5466 9 6 0.8022 -5.4428 3.9580 10 1 1.7851 -5.3716 4.3999 11 6 -0.2438 -5.9705 4.6849 12 7 -1.4406 -6.0576 4.1467 13 14 0.0388 -6.5617 6.4342 14 1 0.5199 -5.4304 7.2673 15 1 -1.2353 -7.0807 6.9932 16 1 1.0563 -7.6432 6.4328 17 6 2.6674 -5.2840 1.3402 18 8 3.7078 -4.8599 0.8833 19 6 2.3091 -6.7383 1.1747 20 7 3.3718 -7.4217 0.4331 21 6 3.2667 -8.7383 0.1645 22 8 2.2902 -9.3589 0.5379 23 7 4.2442 -9.3668 -0.5182 24 6 5.4703 -8.7392 -1.0322 25 6 6.2701 -9.8332 -1.7706 26 6 5.1827 -10.8837 -2.1184 27 6 4.2581 -10.7964 -0.8783 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9163 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 2.0658 -2.6214 0.0452 37 1 0.5472 -2.3475 0.9323 38 1 1.7445 -2.6614 3.0805 39 1 3.2635 -2.9354 2.1939 40 1 -0.1724 -4.1724 2.5473 41 1 0.2210 -5.7969 1.9354 42 1 -2.1764 -6.4292 4.6578 43 1 1.3716 -6.8214 0.6248 44 1 2.1966 -7.1988 2.1562 45 1 4.1508 -6.9265 0.1349 46 1 5.2141 -7.9367 -1.7238 47 1 6.0595 -8.3440 -0.2046 48 1 7.0279 -10.2646 -1.1165 49 1 6.7241 -9.4332 -2.6772 50 1 5.6168 -11.8791 -2.2126 51 1 4.6468 -10.6055 -3.0259 52 1 4.6644 -11.3900 -0.0594 53 1 3.2524 -11.1343 -1.1283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900378955.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:38 Heat of formation + Delta-G solvation = -80.249273 kcal Electronic energy + Delta-G solvation = -30391.617426 eV Core-core repulsion = 26297.468049 eV Total energy + Delta-G solvation = -4094.149377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55889 -40.72717 -38.72236 -38.44106 -37.00309 -35.62941 -34.75467 -33.17969 -32.48707 -30.03854 -29.28930 -28.97317 -28.47752 -26.70755 -24.97763 -24.46669 -23.50035 -22.03569 -21.78465 -21.14481 -20.35387 -19.28322 -18.60060 -17.90786 -17.63822 -17.32123 -16.92090 -16.62260 -16.44826 -16.26672 -16.10186 -15.85921 -15.45178 -15.14631 -14.89339 -14.54867 -14.45854 -14.25857 -14.15175 -13.87674 -13.75787 -13.52322 -13.30299 -13.22425 -13.16016 -13.10189 -12.73168 -12.64593 -12.59398 -12.41622 -12.33467 -12.19916 -12.13016 -12.07239 -11.74977 -11.57626 -11.49974 -11.46101 -10.95802 -10.60452 -10.39559 -9.59960 -9.54456 -9.31628 -8.22809 -6.37349 1.38348 1.40574 1.42821 1.48725 1.54502 2.01572 2.19915 2.41057 2.96636 3.04897 3.08904 3.52044 3.69057 3.72757 3.94119 4.08529 4.12523 4.22600 4.29057 4.31054 4.39279 4.45004 4.48645 4.49757 4.51258 4.62040 4.64440 4.66985 4.74973 4.80505 4.85999 4.87493 4.93443 5.00382 5.01059 5.01996 5.08951 5.13114 5.16587 5.23643 5.27086 5.29545 5.38371 5.61342 5.75753 5.96276 6.00788 6.05081 6.12083 6.42975 6.74210 6.85587 7.11388 7.35193 7.43402 8.83035 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006757 B = 0.003401 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.753234 B = 8231.005923 C =11659.744894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.114 4.114 6 C 0.122 3.878 7 N -0.588 5.588 8 C 0.251 3.749 9 C -0.551 4.551 10 H 0.056 0.944 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.954 3.046 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.277 1.277 17 C 0.517 3.483 18 O -0.577 6.577 19 C 0.134 3.866 20 N -0.723 5.723 21 C 0.715 3.285 22 O -0.634 6.634 23 N -0.638 5.638 24 C 0.087 3.913 25 C -0.118 4.118 26 C -0.121 4.121 27 C 0.112 3.888 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.268 0.732 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.411 0.589 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.111 0.889 51 H 0.078 0.922 52 H 0.068 0.932 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.200 2.695 -12.187 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.001 4.001 7 N -0.317 5.317 8 C 0.130 3.870 9 C -0.589 4.589 10 H 0.074 0.926 11 C -0.178 4.178 12 N -0.556 5.556 13 Si 0.779 3.221 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.203 1.203 17 C 0.305 3.695 18 O -0.459 6.459 19 C 0.006 3.994 20 N -0.381 5.381 21 C 0.416 3.584 22 O -0.516 6.516 23 N -0.377 5.377 24 C -0.035 4.035 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.010 4.010 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.249 0.751 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.129 0.871 51 H 0.096 0.904 52 H 0.087 0.913 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.916 2.274 -12.481 18.105 hybrid contribution -0.618 0.218 1.883 1.994 sum 12.298 2.492 -10.598 16.425 Atomic orbital electron populations 1.22445 0.87033 1.02218 1.00995 1.61959 1.08632 1.14957 1.43325 1.22423 1.01101 0.87675 1.01078 1.21961 1.00569 0.92202 0.91545 1.21760 1.00720 0.94777 0.98065 1.21384 1.00836 0.79326 0.98563 1.48080 1.21576 1.09269 1.52764 1.19133 0.80406 0.94542 0.92912 1.21639 0.95846 1.42170 0.99285 0.92562 1.25639 0.94694 0.95383 1.02074 1.69993 1.01248 1.45448 1.38936 0.85663 0.77476 0.78836 0.80081 1.19079 1.20665 1.20251 1.20262 0.83438 0.87974 0.77865 1.90558 1.25636 1.77942 1.51796 1.20690 0.90831 0.89816 0.98099 1.44672 1.25065 1.07820 1.60564 1.15560 0.82431 0.81346 0.79046 1.90912 1.33707 1.66753 1.60202 1.47673 1.20655 1.11508 1.57823 1.22322 0.84822 0.97779 0.98625 1.22628 0.97094 0.94513 1.01351 1.22794 0.95868 1.01438 0.95805 1.22330 1.00969 0.79561 0.98152 0.95382 0.90139 0.92186 0.90847 0.90320 0.95275 0.94221 0.89976 0.92568 0.92507 0.90267 0.90472 0.95280 0.95675 0.92303 0.89634 0.89686 0.75056 0.91157 0.91295 0.89219 0.87648 0.87088 0.90377 0.91338 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.32 127.69 1.19 1.67 16 2 N -0.56 -13.53 5.02 -948.89 -4.76 -18.30 16 3 C 0.03 0.45 9.57 127.69 1.22 1.68 16 4 C 0.07 1.67 4.96 86.30 0.43 2.09 16 5 C -0.11 -3.54 5.46 30.60 0.17 -3.37 16 6 C 0.12 4.26 5.41 86.38 0.47 4.73 16 7 N -0.59 -24.28 2.46 -826.16 -2.03 -26.31 16 8 C 0.25 12.02 4.97 85.63 0.43 12.45 16 9 C -0.55 -28.92 9.28 25.60 0.24 -28.68 16 10 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.02 1.23 5.46 84.65 0.46 1.70 16 12 N -0.92 -51.76 13.29 21.45 0.28 -51.47 16 13 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 C 0.52 21.23 7.74 87.66 0.68 21.91 16 18 O -0.58 -23.80 15.25 -3.06 -0.05 -23.84 16 19 C 0.13 5.52 4.71 85.63 0.40 5.92 16 20 N -0.72 -26.22 5.49 -482.30 -2.65 -28.86 16 21 C 0.71 26.83 8.49 179.05 1.52 28.35 16 22 O -0.63 -29.59 16.59 -3.96 -0.07 -29.66 16 23 N -0.64 -17.64 3.33 -829.71 -2.76 -20.40 16 24 C 0.09 1.63 6.15 86.73 0.53 2.17 16 25 C -0.12 -1.32 6.95 31.78 0.22 -1.10 16 26 C -0.12 -1.52 7.09 31.99 0.23 -1.29 16 27 C 0.11 2.48 6.91 86.86 0.60 3.08 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.51 8.12 -2.38 -0.02 1.49 16 30 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 31 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 33 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 35 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.85 6.55 -2.39 -0.02 1.84 16 38 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 39 H 0.08 2.65 7.42 -2.38 -0.02 2.63 16 40 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 41 H 0.03 1.29 6.44 -2.39 -0.02 1.27 16 42 H 0.27 14.42 8.31 -92.72 -0.77 13.65 16 43 H 0.09 3.65 7.40 -2.39 -0.02 3.63 16 44 H 0.09 3.94 8.00 -2.39 -0.02 3.92 16 45 H 0.41 13.41 6.42 -92.71 -0.60 12.82 16 46 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 53 H 0.06 1.54 8.03 -2.39 -0.02 1.52 16 Total: -1.00 -69.00 425.70 -0.93 -69.93 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.28 Total: 32.65 kcal Atomic # 6 Polarization: 42.51 SS G_CDS: 8.78 Total: 51.29 kcal Atomic # 7 Polarization: -133.43 SS G_CDS: -11.91 Total: -145.35 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.11 Total: -53.50 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.00 -0.93 -69.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900378955.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.316 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds