Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99946 * 2 1 4 4 C 1.46897 * 111.00267 * 123.96017 * 2 1 3 5 5 C 1.52998 * 109.47001 * 66.04157 * 4 2 1 6 6 C 1.53001 * 109.46766 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47192 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99682 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00052 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00013 * 180.02562 * 9 7 6 11 11 H 1.09007 * 109.53477 * 35.09579 * 10 9 7 12 12 C 1.53112 * 109.50650 * 275.00119 * 10 9 7 13 13 C 1.53120 * 109.16707 * 182.40156 * 12 10 9 14 14 C 1.53045 * 109.27382 * 57.65353 * 13 12 10 15 15 N 1.46844 * 109.52143 * 300.82250 * 14 13 12 16 16 C 1.46906 * 110.99887 * 185.83959 * 15 14 13 17 17 C 1.50706 * 109.46929 * 66.04691 * 16 15 14 18 18 O 1.21290 * 119.99857 * 359.97438 * 17 16 15 19 19 N 1.34768 * 119.99753 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00038 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99491 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00236 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99936 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00013 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47049 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47035 * 119.99557 * 24 22 20 27 27 H 1.48502 * 109.46759 * 239.99690 * 24 22 20 28 28 C 1.46853 * 111.20068 * 61.74346 * 15 14 13 29 29 H 1.09003 * 109.46699 * 296.04051 * 1 2 3 30 30 H 1.08997 * 109.47221 * 56.04149 * 1 2 3 31 31 H 1.08994 * 109.47445 * 176.04659 * 1 2 3 32 32 H 1.08996 * 109.46830 * 183.95696 * 3 2 1 33 33 H 1.09000 * 109.47230 * 303.95591 * 3 2 1 34 34 H 1.09001 * 109.46658 * 63.96068 * 3 2 1 35 35 H 1.09003 * 109.46640 * 306.04240 * 4 2 1 36 36 H 1.08993 * 109.47028 * 186.04622 * 4 2 1 37 37 H 1.08995 * 109.47069 * 60.00694 * 5 4 2 38 38 H 1.08998 * 109.47385 * 299.99403 * 5 4 2 39 39 H 1.09001 * 109.47277 * 60.00049 * 6 5 4 40 40 H 1.09000 * 109.47501 * 300.00218 * 6 5 4 41 41 H 0.97001 * 120.00409 * 0.02562 * 9 7 6 42 42 H 1.09001 * 109.52454 * 62.49598 * 12 10 9 43 43 H 1.08999 * 109.57341 * 302.34413 * 12 10 9 44 44 H 1.08996 * 109.49890 * 297.71825 * 13 12 10 45 45 H 1.08989 * 109.54077 * 177.61187 * 13 12 10 46 46 H 1.09000 * 109.46052 * 180.80838 * 14 13 12 47 47 H 1.08998 * 109.45499 * 60.82968 * 14 13 12 48 48 H 1.08998 * 109.47121 * 186.04358 * 16 15 14 49 49 H 1.09000 * 109.47141 * 306.04556 * 16 15 14 50 50 H 0.97005 * 120.00524 * 0.02562 * 19 17 16 51 51 H 0.96994 * 119.99987 * 179.97438 * 23 22 20 52 52 H 1.09001 * 109.46125 * 58.27453 * 28 15 14 53 53 H 1.09003 * 109.46462 * 178.23846 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9701 6 6 2.1793 -3.0404 2.1552 7 6 1.8202 -4.4948 1.9907 8 8 1.1887 -4.8575 1.0209 9 7 2.2008 -5.3923 2.9214 10 6 1.8522 -6.8061 2.7612 11 1 1.8801 -7.0709 1.7042 12 6 0.4450 -7.0514 3.3126 13 6 0.1121 -8.5414 3.1963 14 6 1.1645 -9.3548 3.9534 15 7 2.4927 -9.0859 3.3880 16 6 3.5099 -9.9528 3.9979 17 6 3.2417 -11.3863 3.6175 18 8 2.2960 -11.6588 2.9086 19 7 4.0526 -12.3652 4.0651 20 6 3.8084 -13.6692 3.7196 21 1 2.9663 -13.9119 3.0883 22 6 4.6442 -14.6786 4.1815 23 7 5.6690 -14.3832 4.9492 24 14 4.3118 -16.4553 3.7101 25 1 3.1070 -16.5206 2.8442 26 1 5.4811 -16.9992 2.9738 27 1 4.0825 -17.2586 4.9379 28 6 2.8541 -7.6697 3.5309 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0251 -0.0708 32 1 3.0827 1.3432 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5612 -0.3873 2.0627 36 1 3.0797 -0.6612 1.1754 37 1 2.0658 -2.6213 0.0449 38 1 0.5472 -2.3475 0.9322 39 1 1.7446 -2.6616 3.0802 40 1 3.2635 -2.9356 2.1936 41 1 2.7055 -5.1021 3.6972 42 1 -0.2774 -6.4709 2.7387 43 1 0.4053 -6.7498 4.3593 44 1 0.1127 -8.8335 2.1462 45 1 -0.8717 -8.7298 3.6259 46 1 0.9385 -10.4170 3.8606 47 1 1.1539 -9.0718 5.0060 48 1 4.4975 -9.6609 3.6409 49 1 3.4709 -9.8513 5.0824 50 1 4.8087 -12.1472 4.6324 51 1 6.2522 -15.0878 5.2719 52 1 2.8356 -7.3949 4.5855 53 1 3.8552 -7.5082 3.1312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317943684.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = -99.307224 kcal Electronic energy + Delta-G solvation = -29356.816044 eV Core-core repulsion = 25261.840252 eV Total energy + Delta-G solvation = -4094.975792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20835 -40.39136 -39.12609 -38.48052 -36.13458 -35.56554 -34.26549 -33.74236 -33.17629 -30.86319 -29.00815 -28.49497 -28.14706 -26.50302 -24.71254 -24.05487 -23.40148 -21.76648 -21.32832 -21.05200 -20.72212 -19.85315 -18.16577 -17.63266 -17.41375 -16.97489 -16.55925 -16.51316 -16.27874 -16.07019 -15.93381 -15.73163 -15.57014 -15.28635 -14.90926 -14.87093 -14.74528 -14.33598 -14.28184 -13.84721 -13.51233 -13.45118 -13.26849 -13.13659 -12.99824 -12.81056 -12.68289 -12.58491 -12.39295 -12.36561 -12.28926 -12.19923 -12.12179 -11.89630 -11.81169 -11.58552 -11.52264 -11.41237 -10.83143 -10.24560 -10.04328 -9.97601 -9.28481 -9.18980 -8.45446 -5.93453 1.36798 1.42176 1.55991 1.71198 2.05176 2.07793 2.31213 2.86968 3.08518 3.21800 3.39389 3.67891 3.83294 3.87621 4.00785 4.03970 4.13598 4.18194 4.26467 4.31687 4.35878 4.43710 4.44405 4.52276 4.54569 4.56990 4.61465 4.62875 4.67558 4.72013 4.73707 4.77373 4.81522 4.91404 5.00339 5.02682 5.03535 5.06749 5.21404 5.25551 5.35442 5.38392 5.42835 5.51191 5.90287 6.09208 6.09688 6.14061 6.23522 6.62593 6.63882 7.15405 7.35420 7.59029 8.15548 8.72165 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.031738 B = 0.001551 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.016099 B =18052.846723 C =18364.442771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.571 5.571 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.098 4.098 6 C -0.127 4.127 7 C 0.508 3.492 8 O -0.589 6.589 9 N -0.712 5.712 10 C 0.154 3.846 11 H 0.060 0.940 12 C -0.117 4.117 13 C -0.106 4.106 14 C 0.055 3.945 15 N -0.537 5.537 16 C 0.061 3.939 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.057 3.943 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.418 0.582 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.064 0.936 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 31.206 1.763 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.295 5.295 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.136 4.136 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.468 6.468 9 N -0.364 5.364 10 C 0.048 3.952 11 H 0.078 0.922 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.073 4.073 15 N -0.263 5.263 16 C -0.069 4.069 17 C 0.227 3.773 18 O -0.501 6.501 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.071 4.071 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.130 0.870 49 H 0.091 0.909 50 H 0.230 0.770 51 H 0.086 0.914 52 H 0.082 0.918 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.661 30.332 -0.235 30.688 hybrid contribution 0.144 -0.629 1.648 1.770 sum -4.516 29.703 1.414 30.078 Atomic orbital electron populations 1.22432 0.87191 1.02189 1.00893 1.61932 1.08556 1.14928 1.44119 1.22408 1.01120 0.87865 1.00921 1.22143 1.00905 0.92470 0.91361 1.21243 1.00812 0.93918 0.97629 1.21633 1.04991 0.88571 1.01521 1.21403 0.77971 0.89606 0.81405 1.90724 1.41819 1.81841 1.32452 1.45863 1.57706 1.06718 1.26134 1.20648 0.94069 0.80521 0.99925 0.92174 1.21856 0.96290 0.95631 1.01749 1.21443 0.98241 0.94428 1.00357 1.22161 0.88437 1.00867 0.95790 1.61271 1.01996 1.03955 1.59051 1.21697 0.97104 0.89484 0.98659 1.20821 0.84393 0.88118 0.83935 1.90479 1.32933 1.84458 1.42219 1.41918 1.27372 1.05912 1.45974 1.19675 1.12649 0.83489 1.30268 0.90509 1.25976 0.95076 1.03839 0.96209 1.69670 1.16279 1.35496 1.34670 0.84909 0.78198 0.77232 0.78228 1.19992 1.19689 1.19559 1.22270 0.98985 0.86213 0.99638 0.95016 0.91010 0.91945 0.90731 0.91098 0.95074 0.93603 0.89471 0.92896 0.92878 0.86107 0.86050 0.74469 0.92538 0.89993 0.93475 0.90058 0.92017 0.93912 0.87002 0.90877 0.76973 0.91357 0.91817 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 127.69 1.19 1.46 16 2 N -0.57 -7.94 5.02 -948.87 -4.76 -12.70 16 3 C 0.02 0.24 9.57 127.69 1.22 1.46 16 4 C 0.06 0.65 4.96 86.30 0.43 1.08 16 5 C -0.10 -1.45 4.43 30.59 0.14 -1.32 16 6 C -0.13 -1.29 5.70 29.85 0.17 -1.12 16 7 C 0.51 9.88 7.80 87.66 0.68 10.56 16 8 O -0.59 -18.03 15.65 -3.02 -0.05 -18.08 16 9 N -0.71 -11.24 5.08 -442.30 -2.25 -13.48 16 10 C 0.15 3.54 2.61 45.04 0.12 3.66 16 11 H 0.06 1.89 7.58 -2.38 -0.02 1.87 16 12 C -0.12 -2.67 5.58 30.67 0.17 -2.50 16 13 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 14 C 0.05 1.76 5.11 86.33 0.44 2.20 16 15 N -0.54 -17.11 4.39 -900.89 -3.96 -21.07 16 16 C 0.06 2.06 5.45 85.56 0.47 2.53 16 17 C 0.44 20.86 7.46 87.66 0.65 21.52 16 18 O -0.61 -34.22 13.92 -3.06 -0.04 -34.26 16 19 N -0.57 -29.30 5.29 -306.99 -1.62 -30.92 16 20 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 24 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 C 0.06 1.25 4.93 86.32 0.43 1.67 16 29 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.06 0.94 6.47 -2.39 -0.02 0.93 16 32 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 33 H 0.07 0.63 8.12 -2.39 -0.02 0.62 16 34 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.05 0.40 8.12 -2.39 -0.02 0.39 16 36 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 37 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 38 H 0.05 0.97 6.51 -2.39 -0.02 0.96 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.42 3.28 8.60 -92.71 -0.80 2.49 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.06 2.54 5.80 -2.39 -0.01 2.52 16 47 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.11 3.25 7.98 -2.39 -0.02 3.23 16 49 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 50 H 0.40 19.06 7.90 -92.70 -0.73 18.33 16 51 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 52 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 Total: -1.00 -76.92 419.97 -3.43 -80.35 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.63 Total: 33.85 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 7.57 Total: 20.21 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -12.31 Total: -127.28 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.09 Total: -52.35 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -76.92 -3.43 -80.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317943684.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds