Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00027 * 2 1 4 4 C 1.53006 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47036 * 175.98757 * 4 3 2 6 6 H 1.08993 * 109.78851 * 298.47872 * 5 4 3 7 7 C 1.53236 * 109.63150 * 58.96778 * 5 4 3 8 8 N 1.46893 * 109.34234 * 173.53937 * 7 5 4 9 9 C 1.46902 * 111.26860 * 296.89279 * 8 7 5 10 10 C 1.52787 * 109.42325 * 62.96417 * 9 8 7 11 11 N 1.47083 * 109.62382 * 177.99546 * 5 4 3 12 12 C 1.34768 * 120.88687 * 9.10907 * 11 5 4 13 13 O 1.21583 * 119.99770 * 4.77067 * 12 11 5 14 14 N 1.34779 * 120.00392 * 184.77065 * 12 11 5 15 15 C 1.46503 * 119.99942 * 174.96069 * 14 12 11 16 16 C 1.53041 * 109.45631 * 205.00085 * 15 14 12 17 17 C 1.53192 * 109.30841 * 178.61908 * 16 15 14 18 18 N 1.46926 * 108.89539 * 54.56661 * 17 16 15 19 19 C 1.36935 * 120.63393 * 126.46194 * 18 17 16 20 20 H 1.08004 * 119.99848 * 330.24357 * 19 18 17 21 21 C 1.38808 * 119.99909 * 150.24222 * 19 18 17 22 22 N 1.31620 * 120.00443 * 344.06651 * 21 19 18 23 23 Si 1.86806 * 119.99700 * 164.07273 * 21 19 18 24 24 H 1.48500 * 109.47146 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47332 * 119.99782 * 23 21 19 26 26 H 1.48498 * 109.47016 * 239.99392 * 23 21 19 27 27 C 1.46964 * 118.71262 * 306.64017 * 18 17 16 28 28 C 1.53044 * 109.45416 * 84.93821 * 15 14 12 29 29 H 1.09000 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46857 * 300.00049 * 1 2 3 31 31 H 1.09006 * 109.46892 * 59.99987 * 1 2 3 32 32 H 1.09002 * 109.47413 * 60.00392 * 3 2 1 33 33 H 1.08993 * 109.47442 * 299.99902 * 3 2 1 34 34 H 1.09000 * 109.46919 * 55.98429 * 4 3 2 35 35 H 1.09000 * 109.46642 * 295.98795 * 4 3 2 36 36 H 1.09006 * 109.49206 * 293.49778 * 7 5 4 37 37 H 1.09004 * 109.49352 * 53.54838 * 7 5 4 38 38 H 1.00900 * 111.00286 * 172.74842 * 8 7 5 39 39 H 1.09006 * 109.49372 * 183.06206 * 9 8 7 40 40 H 1.09001 * 109.49643 * 303.14506 * 9 8 7 41 41 H 1.08998 * 109.55669 * 186.60804 * 10 9 8 42 42 H 1.08998 * 109.45609 * 66.17991 * 10 9 8 43 43 H 0.96999 * 119.99617 * 354.97320 * 14 12 11 44 44 H 1.08996 * 109.46233 * 324.97915 * 15 14 12 45 45 H 1.08995 * 109.50013 * 58.67272 * 16 15 14 46 46 H 1.08996 * 109.49760 * 298.56565 * 16 15 14 47 47 H 1.09000 * 109.58805 * 174.42167 * 17 16 15 48 48 H 1.09002 * 109.59035 * 294.70582 * 17 16 15 49 49 H 0.96999 * 119.99919 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.46502 * 293.57381 * 27 18 17 51 51 H 1.09001 * 109.71147 * 173.29226 * 27 18 17 52 52 H 1.09001 * 109.49751 * 301.33077 * 28 15 14 53 53 H 1.08996 * 109.49726 * 61.40053 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1575 2.5787 -0.1016 6 1 3.8554 3.0508 -1.0364 7 6 3.6944 3.4359 1.0811 8 7 4.4128 4.7171 1.0643 9 6 5.8574 4.5203 1.2443 10 6 6.4091 3.7070 0.0744 11 7 5.6236 2.4702 -0.0542 12 6 6.2309 1.2690 -0.1211 13 8 5.5722 0.2644 -0.3092 14 7 7.5683 1.1811 0.0204 15 6 8.2162 -0.1323 0.0582 16 6 9.5412 -0.0255 0.8166 17 6 10.1991 -1.4073 0.8840 18 7 10.3256 -1.9411 -0.4790 19 6 11.5369 -2.3722 -0.9499 20 1 12.4490 -1.9240 -0.5843 21 6 11.5927 -3.3853 -1.8972 22 7 10.5379 -4.1422 -2.1142 23 14 13.1647 -3.6746 -2.8639 24 1 14.1964 -2.6962 -2.4355 25 1 13.6546 -5.0536 -2.6113 26 1 12.8928 -3.5038 -4.3137 27 6 9.1276 -1.9995 -1.3284 28 6 8.4817 -0.6111 -1.3710 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8519 0.5829 -0.8527 35 1 3.8625 0.7068 0.9229 36 1 2.6228 3.6188 1.0003 37 1 3.9047 2.9127 2.0140 38 1 4.0443 5.3475 1.7606 39 1 6.3547 5.4896 1.2816 40 1 6.0381 3.9822 2.1748 41 1 7.4538 3.4595 0.2626 42 1 6.3275 4.2896 -0.8432 43 1 8.1019 1.9875 0.0974 44 1 7.5644 -0.8444 0.5643 45 1 9.3538 0.3378 1.8270 46 1 10.2029 0.6675 0.2971 47 1 11.1874 -1.3199 1.3352 48 1 9.5820 -2.0771 1.4829 49 1 10.5768 -4.8499 -2.7765 50 1 8.4218 -2.7183 -0.9119 51 1 9.4066 -2.3039 -2.3371 52 1 7.5402 -0.6645 -1.9176 53 1 9.1530 0.0878 -1.8700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336808826.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = -50.363845 kcal Electronic energy + Delta-G solvation = -31428.809221 eV Core-core repulsion = 27335.955773 eV Total energy + Delta-G solvation = -4092.853448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.82543 -39.71431 -38.80915 -38.37108 -36.25298 -34.84018 -34.64183 -33.44814 -31.70169 -31.05203 -30.24145 -27.81689 -26.95609 -26.41243 -25.14304 -23.91521 -23.75765 -22.75429 -22.17812 -21.13067 -20.44292 -19.06295 -18.54423 -17.68391 -17.33188 -17.08291 -16.84587 -16.66968 -16.50464 -16.00943 -15.85165 -15.72399 -15.38923 -15.35582 -15.26996 -14.81321 -14.69064 -14.54240 -14.11225 -13.99783 -13.77654 -13.28844 -13.16650 -13.06694 -13.00609 -12.67605 -12.60401 -12.46167 -12.37691 -12.20600 -12.12579 -12.03091 -11.99607 -11.95044 -11.82251 -11.52550 -11.32808 -10.63060 -10.59090 -10.27230 -10.08242 -9.75290 -9.27977 -8.69151 -7.87183 -5.35855 1.46689 1.48251 1.56017 1.59374 2.16347 2.51383 2.70621 3.01249 3.21684 3.29379 3.66513 3.80477 3.86346 3.91270 4.07691 4.09967 4.11564 4.21390 4.24816 4.32856 4.36277 4.38636 4.44828 4.47708 4.53492 4.54309 4.65390 4.67468 4.76110 4.80061 4.82581 4.83907 4.87729 4.97906 5.04317 5.08255 5.13519 5.22062 5.28476 5.31771 5.44330 5.59262 5.64652 5.68683 5.68934 5.91713 5.92880 6.30646 6.39438 6.44699 7.00861 7.13490 7.63773 7.83755 8.38053 9.20083 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.002626 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.212545 B =10660.241855 C =12074.254432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.060 3.940 4 C -0.102 4.102 5 C 0.174 3.826 6 H 0.083 0.917 7 C 0.052 3.948 8 N -0.687 5.687 9 C 0.046 3.954 10 C 0.109 3.891 11 N -0.629 5.629 12 C 0.697 3.303 13 O -0.618 6.618 14 N -0.728 5.728 15 C 0.183 3.817 16 C -0.119 4.119 17 C 0.142 3.858 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.074 0.926 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.261 1.261 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.186 3.814 28 C -0.128 4.128 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.106 0.894 37 H 0.027 0.973 38 H 0.360 0.640 39 H 0.115 0.885 40 H 0.030 0.970 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.405 0.595 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.010 0.990 49 H 0.249 0.751 50 H -0.013 1.013 51 H 0.050 0.950 52 H 0.042 0.958 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 24.128 8.540 30.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.016 4.016 4 C -0.140 4.140 5 C 0.070 3.930 6 H 0.101 0.899 7 C -0.078 4.078 8 N -0.320 5.320 9 C -0.084 4.084 10 C -0.014 4.014 11 N -0.367 5.367 12 C 0.399 3.601 13 O -0.498 6.498 14 N -0.385 5.385 15 C 0.078 3.922 16 C -0.159 4.159 17 C 0.016 3.984 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.092 0.908 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.184 1.184 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.060 3.940 28 C -0.169 4.169 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.180 0.820 39 H 0.133 0.867 40 H 0.048 0.952 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.244 0.756 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.028 0.972 49 H 0.058 0.942 50 H 0.005 0.995 51 H 0.069 0.931 52 H 0.060 0.940 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.052 23.161 7.668 29.205 hybrid contribution 0.677 -0.796 0.170 1.059 sum -15.375 22.365 7.839 28.250 Atomic orbital electron populations 1.22925 0.79440 1.03571 1.01105 1.87906 1.21629 1.29406 1.95607 1.22744 0.93442 0.84246 1.01216 1.21797 0.92641 0.95953 1.03622 1.21073 0.77788 0.94611 0.99526 0.89901 1.22388 0.99795 0.89912 0.95723 1.60232 1.03337 1.12392 1.56048 1.22264 0.89173 1.01174 0.95814 1.21907 0.95163 0.84102 1.00225 1.47414 1.06926 1.04723 1.77609 1.16230 0.82362 0.83728 0.77815 1.90972 1.63700 1.37189 1.57965 1.45391 1.05238 1.09449 1.78419 1.20464 0.93381 0.83136 0.95238 1.22124 0.94484 0.98772 1.00501 1.21033 0.98860 0.92517 0.85970 1.44332 1.05694 1.73196 1.10045 1.19587 0.85926 1.12565 1.21023 0.90832 1.25952 1.00280 0.95649 1.03114 1.70220 1.31554 1.20592 1.36097 0.85170 0.79645 0.77400 0.77997 1.18448 1.22020 1.21956 1.20406 0.86602 0.91613 0.95400 1.22292 0.98817 0.98516 0.97234 0.89313 0.92613 0.92893 0.91528 0.91965 0.91041 0.93661 0.87549 0.95484 0.81970 0.86718 0.95155 0.88774 0.89833 0.75631 0.93014 0.89170 0.90567 0.91257 0.97250 0.94217 0.99534 0.93117 0.93969 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.67 16 2 O -0.43 -11.24 10.70 -148.98 -1.59 -12.84 16 3 C 0.06 1.26 5.45 71.98 0.39 1.65 16 4 C -0.10 -2.76 3.57 30.59 0.11 -2.65 16 5 C 0.17 3.60 3.19 44.96 0.14 3.75 16 6 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 7 C 0.05 0.74 5.40 86.38 0.47 1.21 16 8 N -0.69 -7.39 6.82 -513.83 -3.50 -10.90 16 9 C 0.05 0.48 6.68 86.23 0.58 1.05 16 10 C 0.11 1.55 6.56 86.20 0.57 2.11 16 11 N -0.63 -14.26 3.02 -812.84 -2.45 -16.72 16 12 C 0.70 21.73 8.10 179.06 1.45 23.18 16 13 O -0.62 -25.06 11.68 -3.98 -0.05 -25.11 16 14 N -0.73 -20.40 4.99 -457.68 -2.28 -22.68 16 15 C 0.18 6.51 2.38 45.02 0.11 6.62 16 16 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 17 C 0.14 5.83 6.51 86.36 0.56 6.40 16 18 N -0.61 -31.36 2.99 -698.99 -2.09 -33.45 16 19 C -0.26 -14.47 9.57 84.03 0.80 -13.66 16 20 H 0.07 3.88 7.88 -2.91 -0.02 3.86 16 21 C -0.05 -3.13 4.93 84.86 0.42 -2.72 16 22 N -0.94 -57.97 11.27 21.65 0.24 -57.72 16 23 Si 0.97 45.57 29.58 68.60 2.03 47.60 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 C 0.19 9.76 5.28 86.36 0.46 10.22 16 28 C -0.13 -5.41 5.65 30.67 0.17 -5.24 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 1.04 6.80 -2.39 -0.02 1.02 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 2.56 6.13 -2.39 -0.01 2.55 16 35 H 0.04 1.48 7.39 -2.39 -0.02 1.46 16 36 H 0.11 1.07 6.90 -2.38 -0.02 1.06 16 37 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.36 2.34 8.90 -89.69 -0.80 1.54 16 39 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 41 H 0.09 1.09 5.64 -2.39 -0.01 1.08 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.41 8.38 6.10 -92.71 -0.57 7.81 16 44 H 0.05 2.16 7.65 -2.39 -0.02 2.15 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 50 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 51 H 0.05 2.98 6.18 -2.39 -0.01 2.96 16 52 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 53 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -77.71 400.09 -2.51 -80.23 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.46 Total: 21.57 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: 7.64 Total: 30.01 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -10.09 Total: -141.47 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.64 Total: -37.94 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -77.71 -2.51 -80.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336808826.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.864 kcal (2) G-P(sol) polarization free energy of solvation -77.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds