Wall clock time and date at job start Sat Apr 11 2020 06:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00304 * 2 1 4 4 C 1.52998 * 109.47324 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47124 * 184.69989 * 4 3 2 6 6 H 1.09007 * 109.78398 * 58.53170 * 5 4 3 7 7 C 1.52780 * 109.55666 * 298.30450 * 5 4 3 8 8 N 1.46904 * 109.42361 * 186.60914 * 7 5 4 9 9 C 1.46900 * 111.26682 * 62.96204 * 8 7 5 10 10 C 1.53236 * 109.33975 * 296.89686 * 9 8 7 11 11 N 1.47075 * 109.63029 * 179.01663 * 5 4 3 12 12 C 1.34781 * 120.87876 * 350.89434 * 11 5 4 13 13 O 1.21584 * 120.00205 * 5.01005 * 12 11 5 14 14 N 1.34784 * 119.99563 * 185.00929 * 12 11 5 15 15 C 1.46500 * 119.99383 * 184.84640 * 14 12 11 16 16 C 1.53043 * 109.45626 * 205.00023 * 15 14 12 17 17 C 1.53198 * 109.31094 * 178.61792 * 16 15 14 18 18 N 1.46917 * 108.77727 * 54.63493 * 17 16 15 19 19 C 1.36935 * 120.63094 * 126.11399 * 18 17 16 20 20 H 1.08000 * 120.00180 * 330.03897 * 19 18 17 21 21 C 1.38819 * 120.00064 * 150.03453 * 19 18 17 22 22 N 1.31614 * 119.99828 * 167.01292 * 21 19 18 23 23 Si 1.86798 * 119.99723 * 347.01138 * 21 19 18 24 24 H 1.48498 * 109.47309 * 88.85709 * 23 21 19 25 25 H 1.48505 * 109.46771 * 208.85716 * 23 21 19 26 26 H 1.48500 * 109.47002 * 328.85176 * 23 21 19 27 27 C 1.46927 * 118.74011 * 306.39236 * 18 17 16 28 28 C 1.53034 * 109.45938 * 84.93596 * 15 14 12 29 29 H 1.09002 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46850 * 299.99562 * 1 2 3 31 31 H 1.09003 * 109.47235 * 59.99930 * 1 2 3 32 32 H 1.08999 * 109.47261 * 60.00204 * 3 2 1 33 33 H 1.09001 * 109.46808 * 300.00584 * 3 2 1 34 34 H 1.08998 * 109.47344 * 64.70151 * 4 3 2 35 35 H 1.08996 * 109.46936 * 304.69685 * 4 3 2 36 36 H 1.08999 * 109.56591 * 66.55612 * 7 5 4 37 37 H 1.08995 * 109.36071 * 306.53650 * 7 5 4 38 38 H 1.00899 * 110.99832 * 187.11729 * 8 7 5 39 39 H 1.08993 * 109.48837 * 176.93468 * 9 8 7 40 40 H 1.09004 * 109.51247 * 56.87273 * 9 8 7 41 41 H 1.09005 * 109.62753 * 294.11809 * 10 9 8 42 42 H 1.09000 * 109.78728 * 173.63686 * 10 9 8 43 43 H 0.96998 * 120.00355 * 4.85383 * 14 12 11 44 44 H 1.08998 * 109.46764 * 324.97476 * 15 14 12 45 45 H 1.09000 * 109.49827 * 58.66732 * 16 15 14 46 46 H 1.08993 * 109.52549 * 298.58518 * 16 15 14 47 47 H 1.09003 * 109.58630 * 294.84928 * 17 16 15 48 48 H 1.09004 * 109.70047 * 174.49432 * 17 16 15 49 49 H 0.97001 * 119.99663 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58707 * 173.39276 * 27 18 17 51 51 H 1.08998 * 109.58588 * 293.81975 * 27 18 17 52 52 H 1.08995 * 109.50101 * 301.33637 * 28 15 14 53 53 H 1.09004 * 109.50162 * 61.43089 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1575 2.5775 0.1176 6 1 3.8130 3.0589 1.0328 7 6 3.7494 3.4237 -1.0872 8 7 4.4720 4.7023 -1.0534 9 6 5.9221 4.4980 -1.1685 10 6 6.4191 3.6963 0.0391 11 7 5.6236 2.4635 0.1410 12 6 6.2223 1.2607 0.2473 13 8 5.5536 0.2453 0.2336 14 7 7.5625 1.1834 0.3687 15 6 8.2228 -0.1243 0.3774 16 6 9.5574 -0.0165 1.1188 17 6 10.2289 -1.3929 1.1560 18 7 10.3412 -1.9016 -0.2178 19 6 11.5510 -2.3065 -0.7151 20 1 12.4620 -1.8487 -0.3588 21 6 11.6067 -3.3056 -1.6773 22 7 12.7238 -3.5201 -2.3393 23 14 10.0961 -4.3456 -2.0323 24 1 9.2789 -3.6887 -3.0839 25 1 10.5195 -5.6894 -2.5017 26 1 9.2893 -4.4855 -0.7935 27 6 9.1317 -1.9618 -1.0499 28 6 8.4725 -0.5790 -1.0623 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.8626 0.7183 -0.9299 35 1 3.8518 0.5726 0.8440 36 1 2.6762 3.6115 -1.0548 37 1 3.9977 2.8898 -2.0045 38 1 4.1364 5.3263 -1.7718 39 1 6.4246 5.4649 -1.1950 40 1 6.1409 3.9492 -2.0845 41 1 6.2963 4.2875 0.9467 42 1 7.4711 3.4435 -0.0934 43 1 8.0896 1.9935 0.4505 44 1 7.5849 -0.8501 0.8818 45 1 9.3809 0.3298 2.1371 46 1 10.2055 0.6906 0.6013 47 1 9.6252 -2.0781 1.7511 48 1 11.2225 -1.3053 1.5955 49 1 12.7626 -4.2180 -3.0119 50 1 9.4016 -2.2471 -2.0667 51 1 8.4386 -2.6933 -0.6346 52 1 7.5239 -0.6329 -1.5965 53 1 9.1307 0.1333 -1.5599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336808827.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:42 Heat of formation + Delta-G solvation = -45.219338 kcal Electronic energy + Delta-G solvation = -31609.313582 eV Core-core repulsion = 27516.683217 eV Total energy + Delta-G solvation = -4092.630365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.85255 -39.86870 -38.87012 -38.44266 -36.32891 -34.86696 -34.65382 -33.66617 -32.00734 -31.48882 -30.24946 -27.83849 -26.92004 -26.37668 -25.10570 -24.49449 -23.69552 -22.78646 -22.24378 -21.28435 -20.51415 -19.05299 -18.63193 -17.77616 -17.52075 -17.20827 -16.89020 -16.71713 -16.47837 -16.16526 -15.95986 -15.77708 -15.66831 -15.42225 -15.23315 -15.08407 -14.72390 -14.46009 -14.23278 -14.04678 -13.94073 -13.73698 -13.46972 -13.26077 -13.11692 -12.72921 -12.60919 -12.52879 -12.37241 -12.20798 -12.18716 -12.06053 -11.98758 -11.93271 -11.71985 -11.47813 -11.41132 -10.80980 -10.61527 -10.33485 -10.04770 -9.78468 -9.31095 -8.93672 -8.17468 -5.54751 1.26555 1.37850 1.45805 1.53896 2.14339 2.38089 2.69635 2.98552 3.07966 3.19694 3.29965 3.79133 3.80415 3.87976 3.94649 4.06573 4.10923 4.20086 4.23294 4.24650 4.30071 4.34842 4.36457 4.44139 4.45672 4.52762 4.53765 4.62224 4.66484 4.69306 4.75293 4.80298 4.83240 4.84825 4.92598 4.96481 5.01414 5.07824 5.13618 5.21369 5.27300 5.40489 5.57632 5.64483 5.87062 5.88709 5.91859 6.12688 6.29774 6.40174 6.89295 6.98176 7.58955 7.60565 8.01460 9.02252 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.002951 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.419943 B = 9484.765190 C =10764.568202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.058 3.942 4 C -0.098 4.098 5 C 0.175 3.825 6 H 0.089 0.911 7 C 0.049 3.951 8 N -0.685 5.685 9 C 0.043 3.957 10 C 0.110 3.890 11 N -0.629 5.629 12 C 0.698 3.302 13 O -0.616 6.616 14 N -0.728 5.728 15 C 0.179 3.821 16 C -0.123 4.123 17 C 0.145 3.855 18 N -0.621 5.621 19 C -0.242 4.242 20 H 0.062 0.938 21 C -0.034 4.034 22 N -0.960 5.960 23 Si 0.947 3.053 24 H -0.281 1.281 25 H -0.311 1.311 26 H -0.264 1.264 27 C 0.121 3.879 28 C -0.127 4.127 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.021 0.979 38 H 0.359 0.641 39 H 0.114 0.886 40 H 0.023 0.977 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.406 0.594 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.261 0.739 50 H 0.050 0.950 51 H 0.026 0.974 52 H 0.051 0.949 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.825 22.397 6.060 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.018 4.018 4 C -0.136 4.136 5 C 0.071 3.929 6 H 0.107 0.893 7 C -0.081 4.081 8 N -0.317 5.317 9 C -0.087 4.087 10 C -0.013 4.013 11 N -0.366 5.366 12 C 0.400 3.600 13 O -0.497 6.497 14 N -0.385 5.385 15 C 0.073 3.927 16 C -0.163 4.163 17 C 0.020 3.980 18 N -0.345 5.345 19 C -0.371 4.371 20 H 0.080 0.920 21 C -0.228 4.228 22 N -0.607 5.607 23 Si 0.778 3.222 24 H -0.209 1.209 25 H -0.240 1.240 26 H -0.189 1.189 27 C -0.004 4.004 28 C -0.168 4.168 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.039 0.961 38 H 0.179 0.821 39 H 0.132 0.868 40 H 0.041 0.959 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.244 0.756 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.044 0.956 52 H 0.070 0.930 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.091 21.463 6.642 32.218 hybrid contribution -0.054 -0.842 -1.690 1.889 sum -23.145 20.621 4.952 31.392 Atomic orbital electron populations 1.22920 0.79497 1.03558 1.01068 1.87898 1.21555 1.29373 1.95603 1.22766 0.93666 0.84248 1.01161 1.21799 0.92342 0.95790 1.03684 1.20998 0.77882 0.94681 0.99369 0.89316 1.22338 1.00015 0.90031 0.95734 1.60270 1.03757 1.12827 1.54850 1.22342 0.89233 1.01190 0.95908 1.21984 0.95057 0.84275 0.99955 1.47409 1.06873 1.04956 1.77405 1.16213 0.82339 0.83782 0.77683 1.90979 1.62868 1.36187 1.59637 1.45363 1.05044 1.09599 1.78492 1.20504 0.93430 0.83945 0.94776 1.22141 0.94335 0.98715 1.01072 1.21095 0.99637 0.93001 0.84288 1.44509 1.04068 1.75535 1.10435 1.18919 0.85386 1.13416 1.19412 0.92047 1.25910 0.98659 0.98933 0.99324 1.69878 1.28401 1.35372 1.27020 0.85976 0.80266 0.77539 0.78415 1.20851 1.23965 1.18859 1.21359 0.88275 0.95964 0.94816 1.22219 0.99168 0.97478 0.97914 0.89292 0.92764 0.92862 0.91761 0.91933 0.93627 0.90892 0.87500 0.96059 0.82135 0.86821 0.95880 0.89108 0.88925 0.75581 0.91633 0.88668 0.90924 0.94949 0.91123 0.92972 0.93169 0.95611 0.93047 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.49 10.70 -148.98 -1.59 -12.08 16 3 C 0.06 1.12 5.50 71.98 0.40 1.52 16 4 C -0.10 -2.45 3.52 30.60 0.11 -2.34 16 5 C 0.17 3.30 3.14 44.81 0.14 3.44 16 6 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 7 C 0.05 0.69 5.46 86.23 0.47 1.16 16 8 N -0.68 -7.45 6.82 -513.86 -3.50 -10.96 16 9 C 0.04 0.48 6.70 86.38 0.58 1.06 16 10 C 0.11 1.44 6.49 86.35 0.56 2.00 16 11 N -0.63 -13.03 3.02 -812.80 -2.45 -15.48 16 12 C 0.70 19.72 8.19 179.05 1.47 21.19 16 13 O -0.62 -22.64 11.48 -3.98 -0.05 -22.68 16 14 N -0.73 -18.25 4.94 -457.68 -2.26 -20.51 16 15 C 0.18 5.61 2.45 45.02 0.11 5.72 16 16 C -0.12 -3.51 5.55 30.67 0.17 -3.34 16 17 C 0.14 5.39 6.52 86.37 0.56 5.96 16 18 N -0.62 -29.41 2.77 -699.09 -1.94 -31.34 16 19 C -0.24 -13.72 10.08 84.04 0.85 -12.87 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 21 C -0.03 -2.01 5.35 84.86 0.45 -1.56 16 22 N -0.96 -61.11 13.97 21.65 0.30 -60.81 16 23 Si 0.95 49.05 24.23 68.60 1.66 50.71 16 24 H -0.28 -14.04 6.52 99.48 0.65 -13.39 16 25 H -0.31 -16.20 7.11 99.48 0.71 -15.50 16 26 H -0.26 -13.28 6.35 99.48 0.63 -12.65 16 27 C 0.12 5.49 4.14 86.36 0.36 5.85 16 28 C -0.13 -4.73 5.65 30.67 0.17 -4.56 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.94 6.88 -2.39 -0.02 0.92 16 34 H 0.04 1.44 7.30 -2.39 -0.02 1.42 16 35 H 0.07 2.36 6.20 -2.39 -0.01 2.34 16 36 H 0.11 1.06 6.95 -2.39 -0.02 1.04 16 37 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.36 2.57 8.90 -89.69 -0.80 1.77 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.09 1.03 5.84 -2.39 -0.01 1.01 16 43 H 0.41 7.51 6.25 -92.71 -0.58 6.93 16 44 H 0.07 2.37 7.51 -2.39 -0.02 2.35 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 2.58 7.93 -2.38 -0.02 2.56 16 49 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 50 H 0.05 2.50 4.23 -2.39 -0.01 2.49 16 51 H 0.03 1.19 6.85 -2.39 -0.02 1.18 16 52 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -77.40 392.86 -2.78 -80.18 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.60 Total: 18.10 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 7.64 Total: 24.88 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -9.85 Total: -139.10 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.64 Total: -34.77 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.66 Total: 50.71 kcal Total: -77.40 -2.78 -80.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336808827.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.963 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds