Wall clock time and date at job start Sat Apr 11 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34772 * 120.00578 * 2 1 4 4 O 1.21281 * 119.99723 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00036 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.46834 * 180.02562 * 5 3 2 7 7 C 1.46845 * 111.00151 * 169.99927 * 6 5 3 8 8 C 1.53032 * 109.52595 * 185.83856 * 7 6 5 9 9 C 1.53124 * 109.28097 * 300.82012 * 8 7 6 10 10 N 1.46496 * 109.52809 * 177.55844 * 9 8 7 11 11 C 1.34772 * 120.00222 * 155.00160 * 10 9 8 12 12 O 1.21283 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99971 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46817 * 319.98961 * 13 11 10 15 15 N 1.46910 * 109.46728 * 199.99907 * 13 11 10 16 16 C 1.52992 * 109.47798 * 79.99728 * 13 11 10 17 17 C 1.52997 * 109.47482 * 185.00026 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46999 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46979 * 120.00025 * 23 21 19 26 26 H 1.48498 * 109.46942 * 239.99938 * 23 21 19 27 27 C 1.53120 * 109.15765 * 57.65224 * 9 8 7 28 28 C 1.46849 * 110.99871 * 294.20864 * 6 5 3 29 29 H 1.08999 * 109.47132 * 300.00325 * 1 2 3 30 30 H 1.08999 * 109.46706 * 59.99471 * 1 2 3 31 31 H 1.08998 * 109.47685 * 179.97438 * 1 2 3 32 32 H 0.97007 * 119.99967 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47141 * 60.00379 * 5 3 2 34 34 H 1.08994 * 109.46987 * 299.99475 * 5 3 2 35 35 H 1.09009 * 109.46027 * 65.82401 * 7 6 5 36 36 H 1.08999 * 109.45554 * 305.85337 * 7 6 5 37 37 H 1.08999 * 109.50735 * 180.88279 * 8 7 6 38 38 H 1.08995 * 109.50631 * 60.75947 * 8 7 6 39 39 H 1.08998 * 109.52257 * 297.69085 * 9 8 7 40 40 H 0.97003 * 119.99378 * 335.00304 * 10 9 8 41 41 H 1.00894 * 110.99558 * 176.04306 * 15 13 11 42 42 H 1.00892 * 110.99957 * 299.99600 * 15 13 11 43 43 H 1.09002 * 109.47103 * 64.99779 * 16 13 11 44 44 H 1.08998 * 109.46862 * 305.00591 * 16 13 11 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 48 48 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 49 49 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.50085 * 62.28940 * 27 9 8 51 51 H 1.08997 * 109.50243 * 182.40395 * 27 9 8 52 52 H 1.08996 * 109.46321 * 294.17850 * 28 6 5 53 53 H 1.08999 * 109.46284 * 54.16315 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1670 0.0006 6 7 4.1357 2.5519 0.0011 7 6 5.5839 2.5980 0.2397 8 6 6.0334 4.0542 0.3783 9 6 5.6841 4.8154 -0.9036 10 7 6.0593 6.2236 -0.7545 11 6 6.3274 6.9686 -1.8451 12 8 6.2585 6.4731 -2.9500 13 6 6.7139 8.4171 -1.6917 14 1 6.1065 8.8745 -0.9107 15 7 6.4895 9.1209 -2.9616 16 6 8.1923 8.5130 -1.3099 17 6 8.5539 9.9735 -1.0326 18 6 10.0325 10.0693 -0.6514 19 6 10.3885 11.5079 -0.3776 20 1 9.6355 12.2769 -0.4670 21 6 11.6755 11.8422 -0.0130 22 7 12.5923 10.9058 0.0963 23 14 12.1168 13.6255 0.3256 24 1 10.9156 14.4775 0.1350 25 1 12.6009 13.7588 1.7232 26 1 13.1847 14.0576 -0.6114 27 6 4.1773 4.7111 -1.1551 28 6 3.7816 3.2357 -1.2493 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 4.0096 0.6529 -0.8892 34 1 4.0089 0.6534 0.8908 35 1 6.1050 2.1352 -0.5985 36 1 5.8182 2.0567 1.1564 37 1 7.1108 4.0888 0.5398 38 1 5.5231 4.5136 1.2248 39 1 6.2255 4.3811 -1.7440 40 1 6.1148 6.6198 0.1292 41 1 6.6800 10.1072 -2.8669 42 1 7.0418 8.7154 -3.7022 43 1 8.8044 8.1365 -2.1295 44 1 8.3760 7.9171 -0.4159 45 1 7.9418 10.3500 -0.2130 46 1 8.3702 10.5693 -1.9267 47 1 10.2167 9.4734 0.2426 48 1 10.6442 9.6930 -1.4712 49 1 13.4976 11.1409 0.3532 50 1 3.6377 5.1809 -0.3327 51 1 3.9286 5.2150 -2.0891 52 1 4.3111 2.7701 -2.0804 53 1 2.7069 3.1580 -1.4140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349822958.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:50 Heat of formation + Delta-G solvation = -116.659811 kcal Electronic energy + Delta-G solvation = -29516.234586 eV Core-core repulsion = 25420.506329 eV Total energy + Delta-G solvation = -4095.728257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.35484 -40.77609 -39.30350 -37.40833 -36.09742 -35.51546 -35.25794 -33.02875 -32.83185 -31.85566 -29.68048 -29.14121 -27.24013 -26.21873 -24.53423 -24.26679 -23.31453 -21.82805 -21.47959 -21.33882 -20.70132 -18.50467 -18.43148 -18.14654 -17.72902 -17.13580 -16.68530 -16.52776 -16.27293 -16.12973 -15.89999 -15.72686 -15.65566 -15.31004 -15.15063 -14.65130 -14.42586 -14.26635 -14.24004 -14.08260 -13.88001 -13.62793 -13.59970 -13.08892 -13.03675 -12.95650 -12.86549 -12.56745 -12.45253 -12.37361 -12.31075 -12.19985 -11.85718 -11.59436 -11.49681 -11.41824 -11.23267 -10.84218 -10.69597 -10.56191 -10.11929 -10.02169 -9.65923 -9.29850 -8.20185 -6.31174 1.40066 1.40834 1.53701 1.61425 1.67780 2.12040 2.18822 2.41065 2.97665 3.13421 3.64144 3.68080 3.80061 3.82530 3.91615 4.01625 4.04159 4.10163 4.20465 4.31603 4.35731 4.41891 4.44651 4.48781 4.50991 4.56346 4.62232 4.64746 4.70853 4.77857 4.89400 4.94012 4.96589 5.02123 5.03596 5.14054 5.18904 5.24065 5.27744 5.48740 5.52664 5.53853 5.73775 5.85616 5.93841 6.06154 6.07312 6.24448 6.48908 6.56899 6.62992 6.86771 7.25806 7.34331 7.38601 8.91583 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026236 B = 0.001608 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.980135 B =17411.831938 C =17933.869589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.503 3.497 4 O -0.570 6.570 5 C 0.037 3.963 6 N -0.536 5.536 7 C 0.062 3.938 8 C -0.118 4.118 9 C 0.147 3.853 10 N -0.715 5.715 11 C 0.524 3.476 12 O -0.574 6.574 13 C 0.084 3.916 14 H 0.120 0.880 15 N -0.833 5.833 16 C -0.132 4.132 17 C -0.095 4.095 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.062 0.938 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.281 1.281 27 C -0.114 4.114 28 C 0.064 3.936 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.419 0.581 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.043 0.957 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.414 0.586 41 H 0.356 0.644 42 H 0.345 0.655 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.054 0.946 47 H -0.007 1.007 48 H -0.015 1.015 49 H 0.263 0.737 50 H 0.068 0.932 51 H 0.047 0.953 52 H 0.031 0.969 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 -26.845 2.608 34.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.380 5.380 3 C 0.290 3.710 4 O -0.448 6.448 5 C -0.093 4.093 6 N -0.261 5.261 7 C -0.065 4.065 8 C -0.156 4.156 9 C 0.042 3.958 10 N -0.367 5.367 11 C 0.310 3.690 12 O -0.452 6.452 13 C -0.031 4.031 14 H 0.138 0.862 15 N -0.365 5.365 16 C -0.172 4.172 17 C -0.133 4.133 18 C -0.014 4.014 19 C -0.579 4.579 20 H 0.081 0.919 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.788 3.212 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.207 1.207 27 C -0.153 4.153 28 C -0.064 4.064 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.256 0.744 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.250 0.750 41 H 0.172 0.828 42 H 0.158 0.842 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.012 0.988 48 H 0.003 0.997 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.066 0.934 52 H 0.049 0.951 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.500 -26.468 2.314 34.816 hybrid contribution 2.153 0.589 -0.260 2.247 sum -20.346 -25.879 2.054 32.984 Atomic orbital electron populations 1.21594 0.79263 1.03981 1.01030 1.45742 1.08133 1.08795 1.75320 1.21114 0.91067 0.83638 0.75213 1.90696 1.71134 1.32945 1.50052 1.22055 0.90769 0.90897 1.05583 1.61580 1.14627 1.14461 1.35471 1.22119 0.85649 0.96267 1.02495 1.21843 1.02250 0.95286 0.96220 1.21011 0.94554 0.80908 0.99332 1.45979 1.69657 1.11532 1.09486 1.20810 0.75234 0.88719 0.84225 1.90633 1.53522 1.74029 1.27031 1.21391 0.95876 0.91071 0.94791 0.86248 1.58699 1.64601 1.07905 1.05313 1.22209 0.94869 0.98380 1.01783 1.21436 0.96844 0.94361 1.00624 1.19014 0.92495 0.95399 0.94523 1.21761 0.95649 0.94631 1.45899 0.91943 1.25973 0.96617 1.01999 0.95286 1.70102 1.03322 1.34774 1.49242 0.85425 0.78429 0.79587 0.77767 1.18430 1.20407 1.20656 1.21803 0.95784 0.96457 1.01303 1.22012 1.01234 0.93503 0.89657 0.93546 0.93772 0.87218 0.74403 0.89787 0.84698 0.93884 0.87519 0.89476 0.89837 0.91739 0.74964 0.82832 0.84204 0.93416 0.90835 0.91818 0.92743 0.98813 0.99665 0.92869 0.91359 0.93447 0.95095 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 127.77 1.37 2.04 16 2 N -0.73 -5.71 5.71 -484.53 -2.77 -8.48 16 3 C 0.50 7.61 7.50 87.66 0.66 8.27 16 4 O -0.57 -14.61 14.33 -3.03 -0.04 -14.65 16 5 C 0.04 0.36 5.45 85.56 0.47 0.83 16 6 N -0.54 -8.43 4.40 -900.92 -3.96 -12.39 16 7 C 0.06 0.74 5.46 86.32 0.47 1.21 16 8 C -0.12 -1.73 5.57 30.65 0.17 -1.56 16 9 C 0.15 3.10 2.52 45.07 0.11 3.22 16 10 N -0.71 -16.01 5.08 -442.16 -2.25 -18.25 16 11 C 0.52 15.27 7.05 87.66 0.62 15.88 16 12 O -0.57 -20.99 15.91 -3.04 -0.05 -21.04 16 13 C 0.08 2.30 3.21 44.16 0.14 2.44 16 14 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 15 N -0.83 -23.74 8.94 -171.79 -1.54 -25.28 16 16 C -0.13 -4.19 4.84 30.59 0.15 -4.05 16 17 C -0.09 -3.59 4.92 30.59 0.15 -3.44 16 18 C 0.02 1.17 4.97 29.85 0.15 1.32 16 19 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 21 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 22 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 23 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 27 C -0.11 -2.64 5.67 30.65 0.17 -2.46 16 28 C 0.06 1.31 5.11 86.33 0.44 1.75 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.42 0.09 8.83 -92.70 -0.82 -0.72 16 33 H 0.08 0.51 8.12 -2.39 -0.02 0.49 16 34 H 0.14 0.51 7.99 -2.39 -0.02 0.49 16 35 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.11 0.79 8.01 -2.39 -0.02 0.77 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 40 H 0.41 7.21 8.61 -92.71 -0.80 6.41 16 41 H 0.36 9.35 7.55 -89.70 -0.68 8.67 16 42 H 0.34 10.40 8.58 -89.70 -0.77 9.63 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.05 1.99 6.87 -2.39 -0.02 1.97 16 47 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 49 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 50 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 51 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.08 1.86 5.78 -2.39 -0.01 1.85 16 Total: -1.00 -80.52 422.15 -4.66 -85.19 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -2.13 Total: 29.50 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.76 Total: -4.21 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -10.23 Total: -120.73 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.09 Total: -35.69 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.52 -4.66 -85.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349822958.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.475 kcal (2) G-P(sol) polarization free energy of solvation -80.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds