Wall clock time and date at job start Sat Apr 11 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00455 * 2 1 4 4 C 1.34778 * 119.99723 * 180.02562 * 2 1 3 5 5 O 1.21593 * 120.00220 * 5.30986 * 4 2 1 6 6 N 1.34779 * 119.99859 * 185.30947 * 4 2 1 7 7 C 1.46502 * 119.99828 * 175.01147 * 6 4 2 8 8 H 1.09006 * 109.50405 * 35.08568 * 7 6 4 9 9 C 1.53115 * 109.50781 * 275.00210 * 7 6 4 10 10 C 1.53112 * 109.16353 * 182.40436 * 9 7 6 11 11 C 1.53041 * 109.27971 * 57.65387 * 10 9 7 12 12 N 1.46847 * 109.51297 * 300.82914 * 11 10 9 13 13 C 1.46903 * 110.99667 * 185.83293 * 12 11 10 14 14 C 1.52994 * 109.47335 * 66.04360 * 13 12 11 15 15 C 1.50698 * 109.47307 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99752 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00187 * 179.97438 * 15 14 13 18 18 C 1.46493 * 119.99990 * 0.02562 * 17 15 14 19 19 C 1.46503 * 119.99848 * 179.97438 * 17 15 14 20 20 C 1.50703 * 109.46750 * 90.00411 * 19 17 15 21 21 H 1.08000 * 120.00181 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99804 * 179.97438 * 20 19 17 23 23 N 1.31513 * 120.00219 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47381 * 60.00387 * 24 22 20 26 26 H 1.48502 * 109.47148 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47333 * 300.00391 * 24 22 20 28 28 C 1.46822 * 111.21049 * 61.74690 * 12 11 10 29 29 H 1.08994 * 109.47510 * 270.00034 * 1 2 3 30 30 H 1.08999 * 109.47021 * 30.00205 * 1 2 3 31 31 H 1.09001 * 109.47565 * 149.99549 * 1 2 3 32 32 H 1.08996 * 109.47320 * 185.22800 * 3 2 1 33 33 H 1.09002 * 109.47144 * 305.23271 * 3 2 1 34 34 H 1.09002 * 109.46913 * 65.22859 * 3 2 1 35 35 H 0.96995 * 120.00419 * 355.01657 * 6 4 2 36 36 H 1.09004 * 109.52159 * 62.49671 * 9 7 6 37 37 H 1.09003 * 109.57581 * 302.34439 * 9 7 6 38 38 H 1.09001 * 109.50708 * 297.71681 * 10 9 7 39 39 H 1.09001 * 109.53566 * 177.61466 * 10 9 7 40 40 H 1.09005 * 109.45977 * 60.83546 * 11 10 9 41 41 H 1.08991 * 109.46823 * 180.81314 * 11 10 9 42 42 H 1.08998 * 109.46814 * 186.04383 * 13 12 11 43 43 H 1.09000 * 109.47191 * 306.03931 * 13 12 11 44 44 H 1.08998 * 109.47189 * 299.99793 * 14 13 12 45 45 H 1.09000 * 109.47334 * 60.00215 * 14 13 12 46 46 H 1.08994 * 109.47470 * 89.99626 * 18 17 15 47 47 H 1.08997 * 109.47263 * 209.99893 * 18 17 15 48 48 H 1.09000 * 109.46963 * 329.99275 * 18 17 15 49 49 H 1.08999 * 109.47147 * 209.99876 * 19 17 15 50 50 H 1.08996 * 109.47087 * 330.00715 * 19 17 15 51 51 H 0.97000 * 120.00028 * 180.02562 * 23 22 20 52 52 H 1.09003 * 109.46287 * 178.24047 * 28 12 11 53 53 H 1.08999 * 109.45863 * 58.26034 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5347 -2.2180 -0.0984 6 7 3.4822 -1.1698 0.1075 7 6 4.2058 -2.4390 0.2170 8 1 3.7048 -3.1967 -0.3856 9 6 4.2344 -2.8866 1.6810 10 6 5.0433 -4.1816 1.7949 11 6 6.4536 -3.9461 1.2493 12 7 6.3720 -3.5204 -0.1537 13 6 7.7100 -3.4183 -0.7515 14 6 8.3413 -4.8098 -0.8294 15 6 9.7137 -4.7052 -1.4432 16 8 10.1446 -3.6240 -1.7843 17 7 10.4626 -5.8129 -1.6122 18 6 9.9423 -7.1188 -1.1997 19 6 11.7965 -5.7112 -2.2094 20 6 12.8178 -5.4921 -1.1231 21 1 12.5046 -5.4348 -0.0911 22 6 14.1520 -5.3659 -1.4467 23 7 14.5335 -5.4361 -2.7033 24 14 15.4179 -5.0935 -0.1003 25 1 15.3854 -6.2357 0.8481 26 1 16.7702 -4.9918 -0.7055 27 1 15.1047 -3.8373 0.6269 28 6 5.6404 -2.2540 -0.2828 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5139 32 1 3.2654 1.0716 -0.0936 33 1 1.8658 1.8798 -0.8394 34 1 2.0063 1.7986 0.9331 35 1 3.9700 -0.3315 0.1128 36 1 3.2161 -3.0614 2.0284 37 1 4.6993 -2.1118 2.2908 38 1 4.5562 -4.9671 1.2171 39 1 5.1033 -4.4830 2.8407 40 1 6.9452 -3.1702 1.8363 41 1 7.0278 -4.8701 1.3157 42 1 7.6288 -2.9995 -1.7545 43 1 8.3343 -2.7700 -0.1365 44 1 8.4225 -5.2286 0.1736 45 1 7.7172 -5.4580 -1.4444 46 1 9.4060 -7.5755 -2.0314 47 1 10.7704 -7.7628 -0.9039 48 1 9.2635 -6.9896 -0.3567 49 1 12.0265 -6.6330 -2.7438 50 1 11.8201 -4.8723 -2.9049 51 1 15.4722 -5.3477 -2.9309 52 1 5.6239 -1.9491 -1.3293 53 1 6.1359 -1.4862 0.3114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363251895.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:57 Heat of formation + Delta-G solvation = -76.417985 kcal Electronic energy + Delta-G solvation = -30031.870154 eV Core-core repulsion = 25937.886914 eV Total energy + Delta-G solvation = -4093.983240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.46969 -40.74886 -39.73358 -36.72380 -36.53188 -36.15613 -34.74240 -34.09483 -31.87602 -30.66525 -29.51800 -28.67947 -27.31244 -26.77300 -26.17423 -24.58042 -23.87828 -22.58048 -21.24727 -20.75667 -19.89028 -19.04228 -18.69237 -18.10770 -17.53031 -17.10260 -16.87731 -16.76704 -16.46887 -16.17277 -15.82632 -15.58990 -15.26659 -15.08040 -14.77690 -14.63141 -14.52974 -14.16660 -13.99194 -13.79524 -13.63118 -13.46858 -13.43184 -13.36972 -13.35081 -13.18564 -12.87908 -12.79880 -12.73158 -12.45623 -12.33068 -12.19242 -12.15941 -11.78596 -11.73355 -11.62322 -11.51673 -11.24239 -10.64011 -10.58311 -10.23411 -9.53440 -9.40342 -9.35826 -8.21788 -6.37021 1.36654 1.40780 1.48256 1.58698 1.86877 2.08060 2.29478 2.42708 2.79830 3.07245 3.11573 3.70357 3.81560 3.85187 3.98059 4.02384 4.17434 4.20610 4.27751 4.32859 4.37991 4.43748 4.52886 4.53773 4.61557 4.67095 4.69183 4.75509 4.75962 4.85822 4.90741 4.92970 4.93796 4.97661 4.98527 5.01755 5.05722 5.10040 5.21505 5.24703 5.36321 5.46456 5.51248 5.56877 5.85363 5.86316 5.98438 6.06705 6.09827 6.70202 6.81568 6.90298 7.28743 7.50567 7.50822 8.84947 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.001826 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.470295 B =15331.888950 C =15579.031263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.640 5.640 3 C 0.075 3.925 4 C 0.698 3.302 5 O -0.633 6.633 6 N -0.731 5.731 7 C 0.172 3.828 8 H 0.073 0.927 9 C -0.124 4.124 10 C -0.107 4.107 11 C 0.045 3.955 12 N -0.535 5.535 13 C 0.084 3.916 14 C -0.116 4.116 15 C 0.495 3.505 16 O -0.601 6.601 17 N -0.612 5.612 18 C 0.079 3.921 19 C 0.258 3.742 20 C -0.543 4.543 21 H 0.054 0.946 22 C 0.006 3.994 23 N -0.929 5.929 24 Si 0.969 3.031 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.277 1.277 28 C 0.056 3.944 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.407 0.593 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.036 0.964 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.022 0.978 50 H -0.003 1.003 51 H 0.267 0.733 52 H 0.079 0.921 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.251 9.449 10.440 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.378 5.378 3 C -0.067 4.067 4 C 0.400 3.600 5 O -0.515 6.515 6 N -0.389 5.389 7 C 0.067 3.933 8 H 0.091 0.909 9 C -0.162 4.162 10 C -0.145 4.145 11 C -0.082 4.082 12 N -0.260 5.260 13 C -0.045 4.045 14 C -0.156 4.156 15 C 0.284 3.716 16 O -0.483 6.483 17 N -0.343 5.343 18 C -0.063 4.063 19 C 0.136 3.864 20 C -0.582 4.582 21 H 0.072 0.928 22 C -0.193 4.193 23 N -0.568 5.568 24 Si 0.793 3.207 25 H -0.184 1.184 26 H -0.204 1.204 27 H -0.203 1.203 28 C -0.073 4.073 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.040 0.960 50 H 0.015 0.985 51 H 0.076 0.924 52 H 0.098 0.902 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -27.572 8.893 9.823 30.591 hybrid contribution 1.727 1.150 0.508 2.136 sum -25.845 10.043 10.331 29.589 Atomic orbital electron populations 1.21596 0.77176 1.03436 1.02109 1.47061 1.07785 1.05119 1.77819 1.21981 0.96754 0.84223 1.03757 1.16074 0.82262 0.84087 0.77626 1.90892 1.68817 1.32169 1.59598 1.45186 1.04695 1.10148 1.78909 1.20628 0.90853 0.85036 0.96821 0.90924 1.21922 1.00292 0.98357 0.95676 1.21505 0.94014 0.97145 1.01843 1.22326 0.97921 1.01098 0.86891 1.61772 1.16121 1.30158 1.17934 1.21586 0.87737 0.95439 0.99692 1.21568 0.90810 0.99829 1.03399 1.21373 0.88177 0.83311 0.78767 1.90629 1.75017 1.29183 1.53491 1.48199 1.17096 1.08429 1.60545 1.21931 0.99978 0.83372 1.01060 1.18748 0.78958 0.95616 0.93066 1.21683 0.92552 1.50119 0.93820 0.92753 1.25891 1.00703 0.94634 0.98106 1.70050 1.17391 1.50696 1.18694 0.85456 0.77460 0.78970 0.78846 1.18430 1.20390 1.20255 1.22181 0.92531 0.90790 1.01784 0.92513 0.88452 0.92607 0.90332 0.90042 0.90540 0.75341 0.92710 0.91217 0.91268 0.89434 0.94563 0.89251 0.91249 0.95414 0.86969 0.86350 0.91255 0.91698 0.88572 0.96001 0.98500 0.92422 0.90234 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 10.52 127.77 1.34 2.52 16 2 N -0.64 -9.07 3.27 -890.20 -2.91 -11.99 16 3 C 0.08 0.43 10.64 127.77 1.36 1.79 16 4 C 0.70 14.81 8.23 179.05 1.47 16.28 16 5 O -0.63 -19.26 15.53 -4.01 -0.06 -19.32 16 6 N -0.73 -11.94 4.98 -457.54 -2.28 -14.22 16 7 C 0.17 3.24 2.66 45.04 0.12 3.36 16 8 H 0.07 1.80 7.51 -2.38 -0.02 1.79 16 9 C -0.12 -2.10 5.58 30.67 0.17 -1.93 16 10 C -0.11 -1.67 6.09 30.65 0.19 -1.48 16 11 C 0.05 0.79 5.29 86.33 0.46 1.25 16 12 N -0.53 -11.14 4.65 -896.42 -4.17 -15.31 16 13 C 0.08 2.21 4.25 86.30 0.37 2.58 16 14 C -0.12 -3.12 4.19 29.85 0.12 -2.99 16 15 C 0.49 20.28 7.67 87.66 0.67 20.95 16 16 O -0.60 -30.96 15.56 -3.04 -0.05 -31.00 16 17 N -0.61 -25.93 2.86 -851.16 -2.43 -28.36 16 18 C 0.08 2.31 10.24 127.77 1.31 3.62 16 19 C 0.26 14.08 5.16 85.63 0.44 14.52 16 20 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 21 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 22 C 0.01 0.32 5.46 84.65 0.46 0.78 16 23 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 24 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 28 C 0.06 1.03 4.93 86.33 0.43 1.45 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 31 H 0.06 0.93 7.35 -2.39 -0.02 0.91 16 32 H 0.08 0.32 5.53 -2.39 -0.01 0.31 16 33 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.41 4.30 6.02 -92.71 -0.56 3.74 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.09 1.46 6.22 -2.39 -0.01 1.44 16 42 H 0.07 2.02 7.94 -2.39 -0.02 2.00 16 43 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 44 H 0.11 2.48 5.70 -2.39 -0.01 2.47 16 45 H 0.12 2.69 8.11 -2.39 -0.02 2.67 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 48 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 49 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 50 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 51 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 52 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 53 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -83.17 417.39 -0.11 -83.28 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.33 Total: 14.86 kcal Atomic # 6 Polarization: 22.29 SS G_CDS: 9.16 Total: 31.44 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -11.51 Total: -126.16 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.11 Total: -50.32 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -83.17 -0.11 -83.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363251895.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.863 kcal (2) G-P(sol) polarization free energy of solvation -83.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds