Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34771 * 120.00134 * 2 1 4 4 O 1.21288 * 120.00147 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00226 * 180.02562 * 3 2 1 6 6 N 1.46898 * 109.47441 * 180.02562 * 5 3 2 7 7 C 1.48064 * 111.00333 * 66.04330 * 6 5 3 8 8 C 1.50739 * 112.93935 * 84.35099 * 7 6 5 9 9 C 1.54518 * 108.94282 * 92.65219 * 8 7 6 10 10 N 1.40085 * 111.50620 * 283.98926 * 9 8 7 11 11 C 1.46905 * 110.99934 * 188.14682 * 10 9 8 12 12 C 1.53003 * 109.46669 * 66.04665 * 11 10 9 13 13 C 1.50697 * 109.46624 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00521 * 359.73045 * 13 12 11 15 15 N 1.34784 * 119.99774 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99971 * 359.72768 * 15 13 12 17 17 C 1.46499 * 119.99893 * 179.72962 * 15 13 12 18 18 C 1.50697 * 109.47293 * 90.00297 * 17 15 13 19 19 H 1.07997 * 120.00010 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00091 * 180.02562 * 18 17 15 21 21 N 1.31517 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47151 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47614 * 119.99582 * 22 20 18 25 25 H 1.48497 * 109.46911 * 239.99550 * 22 20 18 26 26 C 1.47691 * 114.56914 * 61.45557 * 10 9 8 27 27 C 1.47747 * 111.00070 * 193.64936 * 6 5 3 28 28 H 1.08995 * 109.47076 * 300.00068 * 1 2 3 29 29 H 1.09006 * 109.46743 * 59.99761 * 1 2 3 30 30 H 1.08993 * 109.47188 * 180.02562 * 1 2 3 31 31 H 0.96997 * 119.99725 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47205 * 59.99750 * 5 3 2 33 33 H 1.09006 * 109.46520 * 300.00115 * 5 3 2 34 34 H 1.09003 * 108.78765 * 323.45996 * 7 6 5 35 35 H 1.08998 * 108.70258 * 205.18372 * 7 6 5 36 36 H 1.08999 * 109.56071 * 332.81017 * 8 7 6 37 37 H 1.09004 * 109.55993 * 212.49112 * 8 7 6 38 38 H 1.08997 * 109.07311 * 163.47379 * 9 8 7 39 39 H 1.08993 * 109.07234 * 44.51249 * 9 8 7 40 40 H 1.09001 * 109.46925 * 306.05480 * 11 10 9 41 41 H 1.08993 * 109.47365 * 186.05066 * 11 10 9 42 42 H 1.09001 * 109.46782 * 60.00727 * 12 11 10 43 43 H 1.08993 * 109.47555 * 300.00284 * 12 11 10 44 44 H 1.08999 * 109.47256 * 89.99766 * 16 15 13 45 45 H 1.08998 * 109.47416 * 209.99869 * 16 15 13 46 46 H 1.09008 * 109.47058 * 330.00468 * 16 15 13 47 47 H 1.08997 * 109.46865 * 210.00034 * 17 15 13 48 48 H 1.08998 * 109.47058 * 329.99547 * 17 15 13 49 49 H 0.96995 * 120.00744 * 180.02562 * 21 20 18 50 50 H 1.09000 * 109.73723 * 38.33443 * 26 10 9 51 51 H 1.09004 * 109.73938 * 159.03384 * 26 10 9 52 52 H 1.09006 * 108.98587 * 313.43138 * 27 6 5 53 53 H 1.08996 * 108.99399 * 72.25715 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1672 -0.0006 6 7 4.1357 2.5521 0.0002 7 6 3.7839 3.2387 1.2639 8 6 4.7735 2.9762 2.3703 9 6 5.8417 4.0927 2.3631 10 7 6.7608 3.9173 1.3205 11 6 7.8765 4.8659 1.4372 12 6 8.6874 4.5471 2.6948 13 6 9.8323 5.5198 2.8141 14 8 9.9875 6.3799 1.9732 15 7 10.6873 5.4302 3.8522 16 6 10.5001 4.3910 4.8677 17 6 11.8037 6.3720 3.9650 18 6 11.3658 7.5777 4.7560 19 1 10.3567 7.6367 5.1362 20 6 12.2532 8.6059 4.9933 21 7 13.4819 8.5343 4.5298 22 14 11.7102 10.1008 5.9731 23 1 10.2908 9.9385 6.3779 24 1 12.5588 10.2337 7.1844 25 1 11.8494 11.3189 5.1353 26 6 6.1700 3.9590 -0.0324 27 6 5.5758 2.6047 -0.3259 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.9500 -0.8400 -0.0004 32 1 4.0089 0.6535 -0.8908 33 1 4.0096 0.6531 0.8892 34 1 2.7994 2.8991 1.5857 35 1 3.7412 4.3119 1.0784 36 1 5.2534 2.0109 2.2092 37 1 4.2559 2.9726 3.3296 38 1 6.3751 4.0815 3.3136 39 1 5.3481 5.0571 2.2443 40 1 7.4848 5.8809 1.5050 41 1 8.5181 4.7819 0.5601 42 1 9.0791 3.5322 2.6270 43 1 8.0459 4.6312 3.5719 44 1 11.0473 3.4947 4.5755 45 1 10.8745 4.7486 5.8269 46 1 9.4393 4.1563 4.9562 47 1 12.6377 5.8877 4.4729 48 1 12.1171 6.6849 2.9691 49 1 14.1063 9.2575 4.6971 50 1 5.3899 4.7194 -0.0702 51 1 6.9439 4.1879 -0.7652 52 1 6.1003 1.8520 0.2628 53 1 5.7081 2.3823 -1.3846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413062519.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -44.027370 kcal Electronic energy + Delta-G solvation = -30167.540921 eV Core-core repulsion = 26074.962244 eV Total energy + Delta-G solvation = -4092.578678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.50091 -39.54355 -38.74469 -36.30038 -34.91162 -34.77029 -32.69775 -32.55366 -31.63385 -29.65525 -27.91635 -27.14798 -26.32917 -25.65680 -24.86310 -23.57505 -22.04687 -21.02326 -20.58955 -20.02365 -18.32520 -17.55126 -16.98808 -16.56779 -16.53504 -16.44650 -15.67390 -15.57542 -15.48452 -15.18199 -14.96971 -14.48719 -14.38344 -14.15259 -13.84894 -13.51119 -13.39838 -12.94279 -12.78533 -12.71825 -12.56785 -12.42606 -12.26427 -12.18105 -12.01995 -11.97193 -11.74486 -11.45222 -11.33135 -11.13230 -11.09002 -10.88720 -10.74639 -10.59541 -10.47785 -10.15249 -10.06999 -9.59901 -9.53362 -8.87238 -8.45333 -8.43287 -8.29467 -7.61876 -6.03780 -4.08474 2.31320 2.68573 3.29820 3.37126 3.40422 3.48308 3.60263 3.70099 4.17351 4.36601 4.46043 4.61883 4.68527 4.78837 4.85129 4.85872 4.99557 5.01566 5.07998 5.16848 5.20972 5.27102 5.29496 5.32762 5.35030 5.39493 5.43098 5.59736 5.63311 5.71901 5.74376 5.79903 5.85118 5.92763 5.95563 5.97041 6.08643 6.14137 6.17377 6.22833 6.66500 6.78906 7.03372 7.07197 7.08250 7.34232 7.46087 7.56276 7.88933 7.92919 8.24555 8.44590 8.91481 9.12285 9.56743 11.04284 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.027081 B = 0.001790 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.691030 B =15639.773487 C =15840.984958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.511 3.489 4 O -0.518 6.518 5 C 0.039 3.961 6 N -0.531 5.531 7 C 0.056 3.944 8 C -0.149 4.149 9 C 0.068 3.932 10 N -0.558 5.558 11 C 0.078 3.922 12 C -0.136 4.136 13 C 0.504 3.496 14 O -0.545 6.545 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.244 3.756 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.061 3.939 27 C 0.064 3.936 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.401 0.599 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.024 0.976 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.031 0.969 48 H 0.044 0.956 49 H 0.263 0.737 50 H 0.053 0.947 51 H 0.085 0.915 52 H 0.053 0.947 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.947 -22.793 -7.258 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.395 5.395 3 C 0.296 3.704 4 O -0.392 6.392 5 C -0.093 4.093 6 N -0.256 5.256 7 C -0.071 4.071 8 C -0.189 4.189 9 C -0.062 4.062 10 N -0.283 5.283 11 C -0.049 4.049 12 C -0.176 4.176 13 C 0.290 3.710 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.059 4.059 17 C 0.125 3.875 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.066 4.066 27 C -0.063 4.063 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.104 0.896 52 H 0.071 0.929 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.192 -21.624 -7.999 32.001 hybrid contribution 0.085 0.658 1.312 1.470 sum -22.107 -20.966 -6.687 31.194 Atomic orbital electron populations 1.21506 0.79581 1.02101 1.02350 1.45826 1.07792 1.08777 1.77127 1.20704 0.90193 0.83596 0.75882 1.90720 1.70092 1.31043 1.47342 1.21875 0.91919 0.92399 1.03064 1.61866 1.16257 1.13078 1.34389 1.22030 0.98298 1.00090 0.86703 1.22099 0.97310 0.99728 0.99721 1.21109 0.93408 0.96416 0.95265 1.59061 1.12100 1.54344 1.02786 1.21789 0.91326 0.93363 0.98414 1.21687 0.96559 1.00158 0.99229 1.20312 0.83456 0.85212 0.81988 1.90666 1.73713 1.36790 1.41192 1.48160 1.29932 1.32408 1.23071 1.21621 1.00436 0.90722 0.93166 1.19282 0.82961 0.86773 0.98484 1.21478 0.98046 1.03117 1.33794 0.92475 1.24943 0.94854 0.98337 0.96037 1.69940 1.04602 1.33166 1.45673 0.86444 0.78637 0.82754 0.79595 1.19844 1.20957 1.20863 1.21861 0.98466 0.96620 0.89683 1.21913 0.85653 0.98036 1.00705 0.92321 0.92240 0.90744 0.76600 0.87987 0.91853 0.90466 0.90881 0.91115 0.90949 0.90622 0.95820 0.93775 0.89880 0.88968 0.89707 0.93768 0.90895 0.92504 0.95058 0.93842 0.92781 0.92854 0.89631 0.92912 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.70 59.85 0.64 1.06 16 2 N -0.74 -3.85 5.71 -67.07 -0.38 -4.24 16 3 C 0.51 4.36 7.30 -10.99 -0.08 4.28 16 4 O -0.52 -6.72 14.61 5.55 0.08 -6.64 16 5 C 0.04 0.27 5.35 -4.98 -0.03 0.24 16 6 N -0.53 -5.01 4.46 -237.14 -1.06 -6.07 16 7 C 0.06 0.57 4.59 -4.31 -0.02 0.55 16 8 C -0.15 -1.36 5.60 -27.07 -0.15 -1.51 16 9 C 0.07 0.73 4.83 -6.55 -0.03 0.70 16 10 N -0.56 -6.34 3.99 -239.69 -0.96 -7.30 16 11 C 0.08 1.10 4.25 -3.82 -0.02 1.08 16 12 C -0.14 -1.99 4.16 -27.88 -0.12 -2.10 16 13 C 0.50 10.45 7.67 -10.98 -0.08 10.37 16 14 O -0.55 -13.74 15.56 5.56 0.09 -13.65 16 15 N -0.60 -12.90 2.86 -182.96 -0.52 -13.42 16 16 C 0.08 1.34 10.24 59.85 0.61 1.95 16 17 C 0.24 6.48 5.16 -5.20 -0.03 6.45 16 18 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 22 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.06 0.63 5.37 -4.50 -0.02 0.60 16 27 C 0.06 0.56 5.03 -4.47 -0.02 0.54 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.40 0.81 8.83 -40.82 -0.36 0.45 16 32 H 0.10 0.50 8.03 -51.93 -0.42 0.08 16 33 H 0.06 0.35 7.60 -51.93 -0.39 -0.04 16 34 H 0.08 0.86 5.88 -51.93 -0.31 0.55 16 35 H 0.07 0.86 6.52 -51.93 -0.34 0.52 16 36 H 0.07 0.64 6.66 -51.93 -0.35 0.29 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.82 5.94 -51.93 -0.31 0.51 16 39 H 0.02 0.28 7.59 -51.93 -0.39 -0.11 16 40 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 41 H 0.08 1.22 7.63 -51.93 -0.40 0.82 16 42 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 43 H 0.08 1.13 5.62 -51.93 -0.29 0.84 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 46 H 0.06 0.73 6.44 -51.92 -0.33 0.40 16 47 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 48 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.05 0.61 6.77 -51.93 -0.35 0.26 16 51 H 0.09 0.85 7.55 -51.93 -0.39 0.46 16 52 H 0.05 0.46 7.08 -51.93 -0.37 0.10 16 53 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 409.30 15.07 6.17 6.17 Total: -1.00 -36.51 409.30 -9.78 -46.29 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.14 Total: -2.53 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 0.23 Total: 10.42 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -2.18 Total: -57.14 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.51 -9.78 -46.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413062519.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.259 kcal (2) G-P(sol) polarization free energy of solvation -36.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds