Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00354 * 2 1 4 4 C 1.46911 * 110.99930 * 123.95509 * 2 1 3 5 5 C 1.52996 * 109.47008 * 66.04658 * 4 2 1 6 6 C 1.53005 * 109.47023 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46885 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 5 10 10 C 1.46491 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47360 * 186.88795 * 10 9 7 12 12 H 1.09004 * 110.72463 * 302.76529 * 11 10 9 13 13 C 1.54938 * 110.66923 * 179.67341 * 11 10 9 14 14 C 1.54596 * 102.92055 * 204.14775 * 13 11 10 15 15 C 1.53992 * 105.14147 * 21.95583 * 14 13 11 16 16 N 1.47906 * 107.05621 * 1.22451 * 15 14 13 17 17 C 1.46897 * 110.99856 * 214.15071 * 16 15 14 18 18 C 1.50698 * 109.46826 * 63.68444 * 17 16 15 19 19 O 1.21289 * 120.00450 * 352.96755 * 18 17 16 20 20 N 1.34784 * 119.99936 * 172.96837 * 18 17 16 21 21 C 1.37102 * 119.99782 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99752 * 179.72394 * 21 20 18 24 24 N 1.31415 * 119.99946 * 0.27414 * 23 21 20 25 25 Si 1.86800 * 120.00042 * 180.27410 * 23 21 20 26 26 H 1.48497 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46908 * 119.99912 * 25 23 21 28 28 H 1.48496 * 109.47092 * 239.99965 * 25 23 21 29 29 H 1.08995 * 109.47402 * 296.04456 * 1 2 3 30 30 H 1.09002 * 109.47042 * 56.05036 * 1 2 3 31 31 H 1.08999 * 109.47147 * 176.04119 * 1 2 3 32 32 H 1.08998 * 109.47453 * 183.94841 * 3 2 1 33 33 H 1.08997 * 109.47233 * 303.95262 * 3 2 1 34 34 H 1.09006 * 109.46588 * 63.95100 * 3 2 1 35 35 H 1.09000 * 109.46335 * 306.04870 * 4 2 1 36 36 H 1.08996 * 109.47294 * 186.04711 * 4 2 1 37 37 H 1.08996 * 109.47229 * 59.99941 * 5 4 2 38 38 H 1.09006 * 109.47267 * 300.00102 * 5 4 2 39 39 H 1.09000 * 109.46518 * 60.00091 * 6 5 4 40 40 H 1.08996 * 109.47096 * 299.99940 * 6 5 4 41 41 H 0.97001 * 119.99816 * 359.97438 * 9 7 6 42 42 H 1.09011 * 109.47031 * 66.88677 * 10 9 7 43 43 H 1.09006 * 109.47323 * 306.89036 * 10 9 7 44 44 H 1.09008 * 110.72275 * 85.79020 * 13 11 10 45 45 H 1.08995 * 110.87695 * 322.58158 * 13 11 10 46 46 H 1.09003 * 110.30967 * 263.04168 * 14 13 11 47 47 H 1.09005 * 110.38991 * 140.91656 * 14 13 11 48 48 H 1.08992 * 109.92292 * 241.87292 * 15 14 13 49 49 H 1.09005 * 110.07896 * 120.66329 * 15 14 13 50 50 H 1.08993 * 109.47407 * 303.68322 * 17 16 15 51 51 H 1.09007 * 109.47231 * 183.67806 * 17 16 15 52 52 H 0.96999 * 119.99644 * 359.97438 * 20 18 17 53 53 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1377 5 6 1.6314 -2.2426 0.9703 6 6 2.1792 -3.0404 2.1555 7 6 1.8212 -4.4949 1.9904 8 8 1.1897 -4.8577 1.0205 9 7 2.2019 -5.3925 2.9210 10 6 1.8534 -6.8063 2.7608 11 6 2.2482 -7.5751 4.0233 12 1 3.3114 -7.4550 4.2315 13 6 1.8839 -9.0748 3.8867 14 6 1.7483 -9.5329 5.3570 15 6 1.4782 -8.2448 6.1564 16 7 1.4336 -7.1317 5.1834 17 6 1.9777 -5.8990 5.7685 18 6 3.4355 -6.0984 6.0939 19 8 3.9373 -7.1969 5.9815 20 7 4.1818 -5.0560 6.5099 21 6 5.5080 -5.2375 6.8065 22 1 5.9545 -6.2159 6.7072 23 6 6.2788 -4.1617 7.2299 24 7 5.7353 -2.9714 7.3512 25 14 8.0876 -4.4074 7.6266 26 1 8.4529 -5.8304 7.4103 27 1 8.9102 -3.5454 6.7404 28 1 8.3376 -4.0416 9.0440 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3432 -0.0708 33 1 1.5899 1.9163 -0.8524 34 1 1.7043 1.8723 0.9234 35 1 1.5610 -0.3873 2.0628 36 1 3.0797 -0.6612 1.1757 37 1 2.0657 -2.6214 0.0452 38 1 0.5471 -2.3475 0.9323 39 1 1.7444 -2.6615 3.0804 40 1 3.2634 -2.9356 2.1940 41 1 2.7066 -5.1022 3.6968 42 1 2.3869 -7.2171 1.9035 43 1 0.7795 -6.8998 2.5994 44 1 2.6821 -9.6215 3.3844 45 1 0.9402 -9.1984 3.3556 46 1 2.6734 -10.0005 5.6944 47 1 0.9140 -10.2263 5.4634 48 1 2.2808 -8.0781 6.8746 49 1 0.5237 -8.3209 6.6774 50 1 1.4315 -5.6577 6.6803 51 1 1.8732 -5.0813 5.0552 52 1 3.7806 -4.1774 6.5995 53 1 6.2733 -2.2205 7.6471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481053900.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -82.442004 kcal Electronic energy + Delta-G solvation = -31002.363368 eV Core-core repulsion = 26908.118907 eV Total energy + Delta-G solvation = -4094.244461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.56158 -40.52455 -38.82374 -38.50778 -35.98704 -35.62090 -34.22597 -33.52650 -32.95676 -31.12498 -28.59053 -28.41173 -28.23790 -26.31990 -25.57627 -23.88481 -22.16856 -21.93410 -21.68114 -21.17169 -20.70332 -19.79465 -18.37127 -17.71781 -17.27416 -17.02305 -16.84448 -16.60148 -16.21435 -16.12057 -16.01148 -15.72627 -15.56784 -15.47528 -15.36569 -14.71534 -14.60384 -14.33677 -13.76746 -13.62901 -13.34855 -13.30477 -13.19615 -13.04943 -12.86988 -12.80987 -12.59067 -12.49891 -12.40752 -12.33918 -12.22423 -12.18712 -12.13021 -12.09987 -11.95007 -11.63976 -11.56006 -11.16628 -10.90869 -10.84989 -10.05167 -9.96888 -9.30385 -9.14647 -8.46886 -5.95120 1.33719 1.42268 1.53745 1.64440 1.97021 2.19656 2.27969 2.98309 3.04872 3.19217 3.20051 3.67569 3.78878 3.81457 3.97858 4.05669 4.11564 4.24271 4.27866 4.36921 4.40848 4.42069 4.47965 4.51604 4.52287 4.57838 4.62599 4.66272 4.67745 4.76660 4.78845 4.80101 4.81856 4.98151 5.02097 5.03376 5.09271 5.14210 5.18559 5.26122 5.32767 5.41522 5.41896 5.46358 5.88335 5.90132 6.04392 6.07931 6.11563 6.46219 6.56804 7.11319 7.20169 7.52986 8.06695 8.68350 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.003591 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.724336 B = 7794.911488 C =11106.595051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.566 5.566 3 C 0.024 3.976 4 C 0.056 3.944 5 C -0.088 4.088 6 C -0.139 4.139 7 C 0.511 3.489 8 O -0.580 6.580 9 N -0.727 5.727 10 C 0.140 3.860 11 C 0.031 3.969 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.116 4.116 15 C 0.032 3.968 16 N -0.482 5.482 17 C 0.030 3.970 18 C 0.407 3.593 19 O -0.611 6.611 20 N -0.563 5.563 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.912 5.912 25 Si 0.983 3.017 26 H -0.276 1.276 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.037 0.963 49 H 0.085 0.915 50 H 0.109 0.891 51 H 0.106 0.894 52 H 0.396 0.604 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 3.182 -8.274 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.290 5.290 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.126 4.126 6 C -0.179 4.179 7 C 0.300 3.700 8 O -0.460 6.460 9 N -0.380 5.380 10 C 0.016 3.984 11 C -0.077 4.077 12 H 0.091 0.909 13 C -0.143 4.143 14 C -0.154 4.154 15 C -0.095 4.095 16 N -0.204 5.204 17 C -0.102 4.102 18 C 0.193 3.807 19 O -0.499 6.499 20 N -0.199 5.199 21 C -0.458 4.458 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.553 5.553 25 Si 0.808 3.192 26 H -0.201 1.201 27 H -0.198 1.198 28 H -0.200 1.200 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.240 0.760 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.108 0.892 48 H 0.056 0.944 49 H 0.104 0.896 50 H 0.127 0.873 51 H 0.123 0.877 52 H 0.230 0.770 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.348 2.283 -9.550 14.265 hybrid contribution 1.754 0.788 1.890 2.697 sum -8.594 3.070 -7.660 11.915 Atomic orbital electron populations 1.22460 0.86875 1.02446 1.00973 1.61956 1.08813 1.14753 1.43523 1.22421 1.01022 0.87958 1.01018 1.22140 1.00625 0.92884 0.91550 1.21172 1.01097 0.93397 0.96947 1.21690 1.04264 0.89896 1.02069 1.21153 0.78091 0.89232 0.81569 1.90653 1.41812 1.81901 1.31650 1.46464 1.57189 1.08662 1.25691 1.21287 1.00825 0.79839 0.96424 1.23375 0.98455 0.95807 0.90080 0.90928 1.22336 1.02308 0.92542 0.97073 1.22214 1.01706 0.96844 0.94614 1.22874 1.00746 0.90692 0.95218 1.65174 1.46371 1.02648 1.06222 1.22422 0.89834 0.95749 1.02223 1.21768 0.90486 0.84956 0.83451 1.90467 1.74786 1.25734 1.58908 1.42093 1.09504 1.10610 1.57732 1.19623 0.86296 0.96391 1.43535 0.90400 1.25889 1.03741 0.94381 0.96580 1.69652 1.38477 1.00405 1.46741 0.85002 0.77887 0.78144 0.78145 1.20059 1.19758 1.19957 0.95231 0.90503 0.91610 0.91100 0.90455 0.95317 0.93970 0.90236 0.92236 0.91946 0.86951 0.87733 0.76029 0.91785 0.90801 0.90797 0.89418 0.92943 0.89220 0.94448 0.89648 0.87298 0.87657 0.76957 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.32 127.69 1.19 1.55 16 2 N -0.57 -11.24 5.02 -948.86 -4.76 -16.00 16 3 C 0.02 0.37 9.57 127.69 1.22 1.60 16 4 C 0.06 1.11 4.96 86.30 0.43 1.53 16 5 C -0.09 -2.00 4.43 30.59 0.14 -1.87 16 6 C -0.14 -3.16 5.70 29.85 0.17 -2.99 16 7 C 0.51 15.03 7.83 87.66 0.69 15.72 16 8 O -0.58 -20.68 15.96 -3.04 -0.05 -20.73 16 9 N -0.73 -21.18 4.68 -463.06 -2.17 -23.34 16 10 C 0.14 4.10 5.41 86.38 0.47 4.57 16 11 C 0.03 0.97 2.18 45.26 0.10 1.06 16 12 H 0.07 2.83 5.05 -2.38 -0.01 2.82 16 13 C -0.10 -2.69 6.50 31.80 0.21 -2.48 16 14 C -0.12 -3.06 6.93 31.47 0.22 -2.84 16 15 C 0.03 0.98 6.01 86.44 0.52 1.50 16 16 N -0.48 -14.59 5.23 -862.81 -4.51 -19.10 16 17 C 0.03 0.96 5.32 85.56 0.46 1.42 16 18 C 0.41 16.89 6.34 87.66 0.56 17.45 16 19 O -0.61 -29.12 11.37 -3.06 -0.03 -29.15 16 20 N -0.56 -25.72 5.29 -306.97 -1.62 -27.34 16 21 C -0.33 -17.12 9.68 84.04 0.81 -16.30 16 22 H 0.08 4.40 7.16 -2.91 -0.02 4.38 16 23 C -0.01 -0.25 5.50 84.93 0.47 0.22 16 24 N -0.91 -45.62 13.05 21.66 0.28 -45.33 16 25 Si 0.98 40.68 29.55 68.60 2.03 42.71 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 31 H 0.07 1.24 6.47 -2.39 -0.02 1.22 16 32 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 33 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 34 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 36 H 0.08 1.52 8.06 -2.39 -0.02 1.50 16 37 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.06 1.51 6.51 -2.38 -0.02 1.49 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.40 11.91 5.48 -92.71 -0.51 11.40 16 42 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.07 2.18 8.11 -2.38 -0.02 2.16 16 44 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.09 1.95 8.06 -2.39 -0.02 1.93 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.04 1.38 5.79 -2.39 -0.01 1.37 16 49 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 50 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 51 H 0.11 2.98 5.30 -2.38 -0.01 2.97 16 52 H 0.40 17.22 7.90 -92.71 -0.73 16.48 16 53 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -62.93 411.34 -3.53 -66.46 By element: Atomic # 1 Polarization: 52.04 SS G_CDS: -0.33 Total: 51.71 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 7.63 Total: 20.12 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -12.78 Total: -131.12 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -0.08 Total: -49.88 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -62.93 -3.53 -66.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481053900.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.982 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds