Wall clock time and date at job start Sat Apr 11 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00143 * 2 1 4 4 C 1.46905 * 111.00058 * 123.95242 * 2 1 3 5 5 C 1.52997 * 109.47088 * 66.04514 * 4 2 1 6 6 C 1.50696 * 109.47364 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00186 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.63041 * 359.97438 * 8 6 5 10 10 C 1.53191 * 108.77423 * 233.62788 * 9 8 6 11 11 C 1.53037 * 109.31499 * 305.36620 * 10 9 8 12 12 C 1.53043 * 109.53919 * 61.36673 * 11 10 9 13 13 H 1.09000 * 109.49902 * 58.58363 * 12 11 10 14 14 N 1.46894 * 109.49819 * 178.68485 * 12 11 10 15 15 C 1.46902 * 111.00300 * 65.88485 * 14 12 11 16 16 C 1.46903 * 111.00196 * 189.83590 * 14 12 11 17 17 C 1.50694 * 109.47444 * 169.99850 * 16 14 12 18 18 O 1.21292 * 120.00041 * 0.02562 * 17 16 14 19 19 N 1.34777 * 120.00196 * 179.97438 * 17 16 14 20 20 C 1.37097 * 120.00161 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00071 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00058 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00025 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00122 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46702 * 60.00320 * 24 22 20 26 26 H 1.48500 * 109.47223 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47159 * 300.00429 * 24 22 20 28 28 C 1.46926 * 120.63044 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.46918 * 296.04609 * 1 2 3 30 30 H 1.08994 * 109.47430 * 56.04774 * 1 2 3 31 31 H 1.09003 * 109.47402 * 176.04787 * 1 2 3 32 32 H 1.09000 * 109.47467 * 183.95415 * 3 2 1 33 33 H 1.09003 * 109.47055 * 303.95130 * 3 2 1 34 34 H 1.09003 * 109.47298 * 63.95196 * 3 2 1 35 35 H 1.08998 * 109.47053 * 306.04702 * 4 2 1 36 36 H 1.08997 * 109.47368 * 186.04751 * 4 2 1 37 37 H 1.08995 * 109.47395 * 59.99838 * 5 4 2 38 38 H 1.09006 * 109.47337 * 300.00211 * 5 4 2 39 39 H 1.08998 * 109.58340 * 353.41744 * 9 8 6 40 40 H 1.09003 * 109.58494 * 113.70309 * 9 8 6 41 41 H 1.08997 * 109.49512 * 65.31959 * 10 9 8 42 42 H 1.09005 * 109.49659 * 185.37937 * 10 9 8 43 43 H 1.08997 * 109.46383 * 181.38282 * 11 10 9 44 44 H 1.09001 * 109.46057 * 301.34715 * 11 10 9 45 45 H 1.08994 * 109.47236 * 59.99501 * 15 14 12 46 46 H 1.09000 * 109.47303 * 180.02562 * 15 14 12 47 47 H 1.09007 * 109.46732 * 299.99949 * 15 14 12 48 48 H 1.09003 * 109.46842 * 289.99818 * 16 14 12 49 49 H 1.09000 * 109.46972 * 49.99441 * 16 14 12 50 50 H 0.96995 * 119.99887 * 0.02562 * 19 17 16 51 51 H 0.97000 * 119.99829 * 180.02562 * 23 22 20 52 52 H 1.09006 * 109.58406 * 246.15786 * 28 8 6 53 53 H 1.09002 * 109.59019 * 6.57775 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1709 -3.0283 2.1377 7 8 2.7865 -2.4630 3.0166 8 7 1.9695 -4.3592 2.2050 9 6 1.2253 -5.0581 1.1483 10 6 0.0880 -5.8572 1.7922 11 6 0.6638 -6.7785 2.8700 12 6 1.3379 -5.9370 3.9561 13 1 0.6101 -5.2500 4.3882 14 7 1.8626 -6.8204 5.0059 15 6 2.9483 -7.6646 4.4895 16 6 2.3074 -6.0458 6.1721 17 6 2.6065 -6.9832 7.3135 18 8 2.4637 -8.1791 7.1695 19 7 3.0337 -6.4930 8.4940 20 6 3.3053 -7.3458 9.5325 21 1 3.1773 -8.4105 9.4045 22 6 3.7461 -6.8404 10.7494 23 7 3.9023 -5.5448 10.9050 24 14 4.1169 -8.0024 12.1642 25 1 5.1874 -8.9488 11.7598 26 1 4.5671 -7.2194 13.3430 27 1 2.8904 -8.7627 12.5147 28 6 2.4888 -5.1387 3.3370 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9163 -0.8525 34 1 1.7044 1.8724 0.9233 35 1 1.5611 -0.3872 2.0628 36 1 3.0797 -0.6611 1.1757 37 1 2.0657 -2.6214 0.0453 38 1 0.5471 -2.3475 0.9324 39 1 0.8112 -4.3302 0.4506 40 1 1.8945 -5.7345 0.6164 41 1 -0.6279 -5.1710 2.2446 42 1 -0.4126 -6.4555 1.0309 43 1 -0.1403 -7.3662 3.3129 44 1 1.3979 -7.4478 2.4214 45 1 3.7590 -7.0325 4.1271 46 1 3.3182 -8.3090 5.2870 47 1 2.5729 -8.2789 3.6710 48 1 3.2075 -5.4871 5.9154 49 1 1.5211 -5.3516 6.4686 50 1 3.1482 -5.5367 8.6091 51 1 4.2105 -5.1921 11.7544 52 1 3.2607 -5.8235 2.9856 53 1 2.9084 -4.4641 4.0834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491947108.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:08 Heat of formation + Delta-G solvation = -77.945132 kcal Electronic energy + Delta-G solvation = -30550.956101 eV Core-core repulsion = 26456.906639 eV Total energy + Delta-G solvation = -4094.049462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57932 -40.43825 -39.25777 -38.21526 -36.90881 -35.86061 -33.55200 -33.27967 -32.57785 -30.89314 -29.32555 -28.47499 -27.23589 -26.98764 -25.68577 -25.23979 -23.14619 -22.30707 -21.08346 -20.83176 -19.87938 -19.83002 -18.46747 -17.80769 -17.18252 -17.04678 -16.62799 -16.55701 -16.36921 -15.96419 -15.93816 -15.70439 -15.45263 -15.32119 -15.21944 -14.75720 -14.54697 -14.36454 -14.00690 -13.92342 -13.78133 -13.55658 -13.39048 -13.26080 -13.04205 -12.78850 -12.67210 -12.62434 -12.60448 -12.44722 -12.41154 -12.30224 -12.13575 -11.95901 -11.82566 -11.74464 -11.51064 -11.42518 -10.89097 -10.33216 -10.03091 -9.92550 -9.39375 -9.06820 -8.47493 -5.96997 1.38609 1.39851 1.51605 1.57150 1.87505 2.02142 2.26962 2.71653 2.97175 3.18378 3.36482 3.59346 3.76879 3.83165 3.94575 3.98031 4.05921 4.09775 4.17372 4.24705 4.27618 4.29355 4.43802 4.47071 4.50201 4.52330 4.56764 4.58891 4.65539 4.66607 4.71083 4.81556 4.85412 4.88322 4.92869 4.95209 5.00431 5.07961 5.12342 5.16372 5.30788 5.37224 5.40177 5.44997 5.84852 5.96415 6.02585 6.04337 6.17372 6.38319 6.57912 7.10529 7.12469 7.53417 8.08579 8.69860 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002202 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.032692 B =12714.905868 C =14193.628107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.551 5.551 3 C 0.022 3.978 4 C 0.072 3.928 5 C -0.121 4.121 6 C 0.507 3.493 7 O -0.594 6.594 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.125 4.125 11 C -0.108 4.108 12 C 0.078 3.922 13 H 0.074 0.926 14 N -0.519 5.519 15 C 0.021 3.979 16 C 0.056 3.944 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.082 0.918 22 C -0.017 4.017 23 N -0.923 5.923 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.081 3.919 29 H 0.019 0.981 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.099 0.901 50 H 0.394 0.606 51 H 0.277 0.723 52 H 0.076 0.924 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 9.287 -28.019 30.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.275 5.275 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.161 4.161 6 C 0.296 3.704 7 O -0.475 6.475 8 N -0.338 5.338 9 C -0.022 4.022 10 C -0.164 4.164 11 C -0.146 4.146 12 C -0.031 4.031 13 H 0.093 0.907 14 N -0.242 5.242 15 C -0.126 4.126 16 C -0.075 4.075 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.100 0.900 22 C -0.216 4.216 23 N -0.564 5.564 24 Si 0.819 3.181 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.044 4.044 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.075 0.925 49 H 0.117 0.883 50 H 0.227 0.773 51 H 0.087 0.913 52 H 0.094 0.906 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.445 8.356 -27.776 30.210 hybrid contribution 0.967 1.039 2.042 2.486 sum -7.478 9.394 -25.734 28.398 Atomic orbital electron populations 1.22570 0.86329 1.03488 1.00875 1.62038 1.09083 1.14418 1.41994 1.22435 1.01025 0.88212 1.00962 1.21735 1.00089 0.92712 0.91139 1.21612 1.03940 0.93866 0.96658 1.21359 0.78950 0.82152 0.87895 1.90711 1.43788 1.70216 1.42754 1.48203 1.55110 1.06807 1.23679 1.22158 0.93740 0.97420 0.88833 1.21906 0.97445 0.98549 0.98468 1.21567 1.00487 0.97793 0.94706 1.22153 0.95677 0.93554 0.91762 0.90741 1.61872 1.35454 1.21639 1.05275 1.22522 0.92171 0.97088 1.00840 1.21719 1.00758 0.94440 0.90583 1.20608 0.82239 0.89514 0.84525 1.90451 1.58207 1.17615 1.83251 1.41962 1.58981 1.09762 1.10571 1.19650 1.43514 0.91662 0.91312 0.89997 1.26117 0.96532 0.98100 1.00871 1.69691 1.46699 1.12692 1.27342 0.84944 0.78805 0.77589 0.76717 1.19544 1.19582 1.19546 1.22229 0.97631 0.94810 0.89685 0.96208 0.90004 0.89757 0.91367 0.89663 0.96092 0.95972 0.91623 0.85779 0.86368 0.86550 0.89647 0.91493 0.87276 0.91222 0.90892 0.95148 0.92533 0.89298 0.92459 0.88310 0.77295 0.91327 0.90585 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 127.69 1.19 1.34 16 2 N -0.55 -7.65 5.02 -948.85 -4.76 -12.41 16 3 C 0.02 0.27 9.57 127.69 1.22 1.49 16 4 C 0.07 1.26 4.25 86.30 0.37 1.63 16 5 C -0.12 -1.63 3.97 29.85 0.12 -1.51 16 6 C 0.51 11.31 7.70 87.66 0.67 11.99 16 7 O -0.59 -19.57 15.40 -3.04 -0.05 -19.62 16 8 N -0.61 -11.52 2.97 -818.99 -2.43 -13.96 16 9 C 0.10 0.97 6.34 86.36 0.55 1.51 16 10 C -0.13 -1.29 6.08 30.67 0.19 -1.11 16 11 C -0.11 -1.91 5.05 30.62 0.15 -1.76 16 12 C 0.08 1.93 2.34 44.98 0.11 2.04 16 13 H 0.07 1.98 7.94 -2.39 -0.02 1.96 16 14 N -0.52 -17.21 4.45 -901.25 -4.01 -21.22 16 15 C 0.02 0.68 8.43 127.69 1.08 1.75 16 16 C 0.06 2.15 5.02 85.55 0.43 2.58 16 17 C 0.44 22.12 7.48 87.66 0.66 22.77 16 18 O -0.61 -34.15 13.91 -3.07 -0.04 -34.19 16 19 N -0.58 -31.02 5.29 -306.99 -1.62 -32.65 16 20 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 21 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 22 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 23 N -0.92 -51.82 13.05 21.66 0.28 -51.54 16 24 Si 1.00 44.06 29.55 68.60 2.03 46.08 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 C 0.08 2.01 5.01 86.35 0.43 2.44 16 29 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 31 H 0.08 0.59 6.47 -2.39 -0.02 0.57 16 32 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 34 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.02 0.48 8.08 -2.39 -0.02 0.46 16 36 H 0.07 1.36 8.02 -2.39 -0.02 1.35 16 37 H 0.12 1.17 7.94 -2.39 -0.02 1.15 16 38 H 0.12 1.02 6.10 -2.38 -0.01 1.01 16 39 H 0.12 0.47 5.93 -2.39 -0.01 0.46 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.11 0.58 8.14 -2.38 -0.02 0.57 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.22 6.61 -2.39 -0.02 1.21 16 45 H 0.03 0.88 6.10 -2.39 -0.01 0.86 16 46 H 0.06 2.29 5.82 -2.39 -0.01 2.27 16 47 H 0.09 2.31 6.50 -2.38 -0.02 2.30 16 48 H 0.06 2.10 7.20 -2.39 -0.02 2.08 16 49 H 0.10 3.52 7.93 -2.39 -0.02 3.50 16 50 H 0.39 20.56 7.90 -92.71 -0.73 19.83 16 51 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 52 H 0.08 1.82 6.04 -2.38 -0.01 1.80 16 53 H 0.06 1.92 6.05 -2.39 -0.01 1.91 16 Total: -1.00 -76.50 406.01 -1.99 -78.50 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.18 Total: 34.87 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 8.44 Total: 26.13 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -12.55 Total: -131.77 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.09 Total: -53.81 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -76.50 -1.99 -78.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491947108.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.551 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds