Wall clock time and date at job start Sat Apr 11 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 111.00064 * 2 1 4 4 C 1.46900 * 111.00065 * 123.95137 * 2 1 3 5 5 C 1.53002 * 109.46574 * 66.05025 * 4 2 1 6 6 C 1.50705 * 109.47100 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99720 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99915 * 179.97438 * 6 5 4 9 9 C 1.47017 * 125.65287 * 0.02562 * 8 6 5 10 10 C 1.54321 * 107.27340 * 178.89691 * 9 8 6 11 11 C 1.55151 * 102.94344 * 337.80714 * 10 9 8 12 12 H 1.09007 * 111.00655 * 277.38926 * 11 10 9 13 13 C 1.53002 * 111.00919 * 153.57802 * 11 10 9 14 14 N 1.46901 * 109.46840 * 64.27886 * 13 11 10 15 15 C 1.46899 * 110.99709 * 199.63528 * 14 13 11 16 16 C 1.46903 * 110.99518 * 75.68948 * 14 13 11 17 17 C 1.50705 * 109.46774 * 189.99793 * 16 14 13 18 18 O 1.21296 * 119.99956 * 359.97438 * 17 16 14 19 19 N 1.34774 * 120.00051 * 179.97438 * 17 16 14 20 20 C 1.37091 * 120.00172 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99977 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00196 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99767 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46970 * 59.99863 * 24 22 20 26 26 H 1.48500 * 109.47132 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46673 * 300.00012 * 24 22 20 28 28 C 1.47431 * 125.64645 * 179.97438 * 8 6 5 29 29 H 1.08998 * 109.46761 * 296.04533 * 1 2 3 30 30 H 1.09006 * 109.46597 * 56.04452 * 1 2 3 31 31 H 1.08995 * 109.46768 * 176.04579 * 1 2 3 32 32 H 1.09000 * 109.47181 * 183.95015 * 3 2 1 33 33 H 1.09001 * 109.47109 * 303.95685 * 3 2 1 34 34 H 1.08999 * 109.47049 * 63.95441 * 3 2 1 35 35 H 1.08988 * 109.47609 * 306.04942 * 4 2 1 36 36 H 1.09005 * 109.47377 * 186.04214 * 4 2 1 37 37 H 1.08997 * 109.47523 * 60.00215 * 5 4 2 38 38 H 1.08997 * 109.47218 * 299.99693 * 5 4 2 39 39 H 1.09004 * 109.88231 * 59.47543 * 9 8 6 40 40 H 1.08999 * 109.88326 * 298.31202 * 9 8 6 41 41 H 1.08997 * 110.72249 * 96.17190 * 10 9 8 42 42 H 1.09006 * 110.71739 * 219.26777 * 10 9 8 43 43 H 1.08995 * 109.47456 * 184.28300 * 13 11 10 44 44 H 1.09004 * 109.46754 * 304.28507 * 13 11 10 45 45 H 1.09004 * 109.46989 * 65.06165 * 15 14 13 46 46 H 1.09002 * 109.46829 * 185.05196 * 15 14 13 47 47 H 1.08998 * 109.47949 * 305.05706 * 15 14 13 48 48 H 1.09004 * 109.47001 * 309.99537 * 16 14 13 49 49 H 1.08995 * 109.47584 * 69.99672 * 16 14 13 50 50 H 0.97006 * 119.99371 * 359.97438 * 19 17 16 51 51 H 0.97002 * 120.00243 * 180.02562 * 23 22 20 52 52 H 1.08998 * 110.36581 * 85.33516 * 28 8 6 53 53 H 1.08997 * 110.46004 * 323.05836 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1721 -3.0285 2.1370 7 8 2.7874 -2.4632 3.0160 8 7 1.9708 -4.3595 2.2040 9 6 1.2456 -5.1675 1.2128 10 6 1.2943 -6.6334 1.6925 11 6 2.5277 -6.6503 2.6336 12 1 3.4511 -6.7633 2.0656 13 6 2.3979 -7.7512 3.6882 14 7 2.3984 -9.0637 3.0285 15 6 1.8232 -10.0933 3.9043 16 6 3.7526 -9.4357 2.5976 17 6 3.6819 -10.6567 1.7170 18 8 2.6089 -11.1670 1.4729 19 7 4.8108 -11.1815 1.2008 20 6 4.7465 -12.2925 0.4002 21 1 3.7913 -12.7474 0.1835 22 6 5.9103 -12.8334 -0.1325 23 7 7.0727 -12.2802 0.1316 24 14 5.8227 -14.3468 -1.2240 25 1 4.9870 -14.0503 -2.4151 26 1 7.1916 -14.7225 -1.6601 27 1 5.2198 -15.4710 -0.4637 28 6 2.4425 -5.2465 3.2831 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5741 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3433 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5612 -0.3873 2.0627 36 1 3.0798 -0.6611 1.1756 37 1 2.0659 -2.6213 0.0451 38 1 0.5473 -2.3475 0.9322 39 1 1.7273 -5.0798 0.2390 40 1 0.2102 -4.8330 1.1479 41 1 0.3877 -6.8904 2.2402 42 1 1.4392 -7.3101 0.8503 43 1 3.2378 -7.6921 4.3804 44 1 1.4650 -7.6206 4.2368 45 1 0.7698 -9.8744 4.0792 46 1 1.9173 -11.0692 3.4281 47 1 2.3556 -10.1002 4.8554 48 1 4.1959 -8.6107 2.0399 49 1 4.3653 -9.6536 3.4723 50 1 5.6688 -10.7731 1.3958 51 1 7.8852 -12.6575 -0.2405 52 1 1.7299 -5.2526 4.1078 53 1 3.4249 -4.9305 3.6339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567736193.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:41 Heat of formation + Delta-G solvation = -80.422010 kcal Electronic energy + Delta-G solvation = -29706.425568 eV Core-core repulsion = 25612.268701 eV Total energy + Delta-G solvation = -4094.156868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23958 -40.35916 -39.14328 -38.19919 -37.31310 -35.82181 -33.42937 -33.24045 -32.05215 -30.42052 -29.51326 -28.48244 -27.83330 -26.63117 -25.82898 -24.00479 -23.30739 -22.09163 -21.39518 -20.73217 -20.08409 -19.76651 -18.27533 -18.01049 -17.35897 -16.86706 -16.62250 -16.54752 -16.35820 -16.11722 -15.77648 -15.64985 -15.31904 -15.19982 -15.08360 -14.87580 -14.49518 -14.21484 -13.76943 -13.70642 -13.63864 -13.45397 -13.36822 -13.27362 -13.03255 -12.78327 -12.74421 -12.62176 -12.61236 -12.45667 -12.42318 -12.36995 -12.11434 -11.98435 -11.89671 -11.80014 -11.47241 -11.38332 -10.96345 -10.22140 -9.96966 -9.67796 -9.38019 -9.15139 -8.43819 -5.92175 1.41209 1.42853 1.53599 1.56829 1.91586 2.09433 2.30279 2.79140 2.97501 3.23269 3.39645 3.59653 3.70476 3.81514 3.86073 3.95941 4.09089 4.24896 4.28503 4.32970 4.37953 4.39659 4.46325 4.47869 4.53065 4.56108 4.57699 4.64743 4.67586 4.69202 4.71766 4.79190 4.82896 4.88749 4.93361 4.96974 5.00539 5.04970 5.06948 5.20128 5.23439 5.34980 5.42357 5.43433 5.91557 5.97668 6.04714 6.10841 6.25407 6.49095 6.63764 7.09110 7.16105 7.60374 8.16085 8.73369 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.001884 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.504002 B =14862.343877 C =15857.941542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.558 5.558 3 C 0.023 3.977 4 C 0.075 3.925 5 C -0.122 4.122 6 C 0.525 3.475 7 O -0.590 6.590 8 N -0.618 5.618 9 C 0.098 3.902 10 C -0.108 4.108 11 C -0.091 4.091 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.528 5.528 15 C 0.029 3.971 16 C 0.056 3.944 17 C 0.444 3.556 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.272 1.272 28 C 0.114 3.886 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.030 0.970 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.394 0.606 51 H 0.276 0.724 52 H 0.078 0.922 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 22.606 3.262 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.282 5.282 3 C -0.125 4.125 4 C -0.054 4.054 5 C -0.162 4.162 6 C 0.315 3.685 7 O -0.471 6.471 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.146 4.146 11 C -0.111 4.111 12 H 0.092 0.908 13 C -0.058 4.058 14 N -0.252 5.252 15 C -0.119 4.119 16 C -0.075 4.075 17 C 0.231 3.769 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.009 4.009 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.122 0.878 49 H 0.080 0.920 50 H 0.228 0.772 51 H 0.086 0.914 52 H 0.097 0.903 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.292 22.405 2.638 25.691 hybrid contribution 1.080 -0.423 1.082 1.586 sum -11.212 21.982 3.720 24.955 Atomic orbital electron populations 1.22546 0.86352 1.03231 1.01006 1.61998 1.09122 1.14652 1.42397 1.22425 1.00999 0.88012 1.01062 1.21714 1.00174 0.92217 0.91246 1.21571 1.03784 0.94283 0.96586 1.20808 0.79035 0.80882 0.87778 1.90686 1.43874 1.69781 1.42732 1.48620 1.55114 1.06464 1.24939 1.22296 0.97516 0.90665 0.91874 1.22466 0.98146 0.94165 0.99806 1.22258 0.99629 0.92290 0.96921 0.90782 1.22073 1.02543 0.86812 0.94409 1.61487 1.19246 1.02866 1.41643 1.22398 0.99995 0.95801 0.93722 1.21764 0.91579 0.95969 0.98168 1.20750 0.83893 0.87553 0.84707 1.90466 1.29650 1.64986 1.64558 1.41959 1.08181 1.26824 1.44493 1.19617 0.94647 1.05670 1.26041 0.90167 1.26028 0.94089 1.01976 0.99340 1.69670 0.98379 1.42385 1.45909 0.85005 0.77552 0.77653 0.78237 1.19647 1.19737 1.19724 1.22171 1.00069 0.88331 0.90347 0.95701 0.90180 0.90258 0.91365 0.89895 0.95652 0.95248 0.91453 0.86938 0.86804 0.90377 0.89035 0.89796 0.90694 0.93498 0.88709 0.90160 0.92815 0.95198 0.87801 0.91979 0.77215 0.91426 0.90339 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.32 127.69 1.19 1.37 16 2 N -0.56 -8.16 5.02 -948.83 -4.76 -12.92 16 3 C 0.02 0.28 9.57 127.69 1.22 1.51 16 4 C 0.08 1.31 4.25 86.30 0.37 1.67 16 5 C -0.12 -1.86 4.82 29.85 0.14 -1.72 16 6 C 0.52 11.53 7.85 87.66 0.69 12.22 16 7 O -0.59 -17.77 16.24 -3.04 -0.05 -17.82 16 8 N -0.62 -11.93 3.33 -811.80 -2.70 -14.63 16 9 C 0.10 1.45 6.49 86.73 0.56 2.01 16 10 C -0.11 -1.97 6.20 31.78 0.20 -1.77 16 11 C -0.09 -1.80 3.05 -9.40 -0.03 -1.83 16 12 H 0.07 1.67 6.87 -2.38 -0.02 1.65 16 13 C 0.07 1.43 4.45 86.30 0.38 1.82 16 14 N -0.53 -15.38 4.20 -927.02 -3.89 -19.28 16 15 C 0.03 0.84 9.16 127.69 1.17 2.01 16 16 C 0.06 1.88 5.28 85.56 0.45 2.33 16 17 C 0.44 20.50 7.42 87.66 0.65 21.15 16 18 O -0.61 -32.44 13.96 -3.08 -0.04 -32.49 16 19 N -0.58 -29.24 5.29 -306.98 -1.62 -30.87 16 20 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 24 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 C 0.11 2.21 6.37 86.85 0.55 2.77 16 29 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.69 8.12 -2.38 -0.02 0.67 16 31 H 0.08 0.70 6.47 -2.39 -0.02 0.69 16 32 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 34 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 36 H 0.07 1.37 8.02 -2.38 -0.02 1.35 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.11 1.24 6.55 -2.39 -0.02 1.23 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.43 8.04 -2.39 -0.02 1.41 16 42 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.05 0.91 8.00 -2.39 -0.02 0.89 16 44 H 0.09 1.64 7.94 -2.38 -0.02 1.62 16 45 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.05 2.05 5.79 -2.39 -0.01 2.03 16 47 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 48 H 0.10 3.12 6.67 -2.39 -0.02 3.10 16 49 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 50 H 0.39 19.17 7.90 -92.70 -0.73 18.43 16 51 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 52 H 0.08 1.37 8.04 -2.39 -0.02 1.35 16 53 H 0.06 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -71.20 420.82 -1.78 -72.98 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.15 Total: 34.28 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 8.83 Total: 25.50 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -12.70 Total: -127.19 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.09 Total: -50.30 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.20 -1.78 -72.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567736193.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.445 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds