Wall clock time and date at job start Sat Apr 11 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99949 * 2 1 4 4 C 1.46896 * 110.99584 * 123.95417 * 2 1 3 5 5 C 1.53008 * 109.47008 * 169.99867 * 4 2 1 6 6 C 1.50690 * 109.47320 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00098 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00056 * 180.02562 * 6 5 4 9 9 C 1.47018 * 125.65029 * 359.95931 * 8 6 5 10 10 C 1.54372 * 107.29103 * 181.13095 * 9 8 6 11 11 C 1.55157 * 102.92010 * 22.13544 * 10 9 8 12 12 H 1.09003 * 111.00188 * 82.64231 * 11 10 9 13 13 C 1.53004 * 111.00251 * 206.45481 * 11 10 9 14 14 N 1.46896 * 109.47166 * 290.41738 * 13 11 10 15 15 C 1.46897 * 111.00124 * 293.95737 * 14 13 11 16 16 C 1.46902 * 110.99925 * 169.99935 * 14 13 11 17 17 C 1.50696 * 109.46978 * 190.00261 * 16 14 13 18 18 O 1.21295 * 120.00238 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00076 * 180.02562 * 17 16 14 20 20 C 1.37105 * 120.00244 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99708 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99901 * 359.71836 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72210 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72333 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72143 * 24 22 20 28 28 C 1.47431 * 125.64959 * 180.02562 * 8 6 5 29 29 H 1.08996 * 109.47558 * 296.04558 * 1 2 3 30 30 H 1.09002 * 109.46845 * 56.04992 * 1 2 3 31 31 H 1.08997 * 109.47021 * 176.04370 * 1 2 3 32 32 H 1.09001 * 109.47186 * 183.94821 * 3 2 1 33 33 H 1.09001 * 109.47529 * 303.95824 * 3 2 1 34 34 H 1.09007 * 109.47109 * 63.95467 * 3 2 1 35 35 H 1.09004 * 109.47240 * 50.00609 * 4 2 1 36 36 H 1.08996 * 109.47754 * 289.99773 * 4 2 1 37 37 H 1.09004 * 109.46513 * 60.00297 * 5 4 2 38 38 H 1.08996 * 109.46786 * 300.00499 * 5 4 2 39 39 H 1.09001 * 109.88040 * 300.51265 * 9 8 6 40 40 H 1.08994 * 109.88145 * 61.67407 * 9 8 6 41 41 H 1.08999 * 110.69934 * 263.79182 * 10 9 8 42 42 H 1.08997 * 110.75905 * 140.50575 * 10 9 8 43 43 H 1.09000 * 109.46595 * 170.42279 * 13 11 10 44 44 H 1.08995 * 109.47112 * 50.42008 * 13 11 10 45 45 H 1.08997 * 109.47316 * 296.04141 * 15 14 13 46 46 H 1.09003 * 109.47554 * 56.04624 * 15 14 13 47 47 H 1.09007 * 109.46965 * 176.04316 * 15 14 13 48 48 H 1.08999 * 109.46697 * 70.00700 * 16 14 13 49 49 H 1.08993 * 109.47253 * 310.00350 * 16 14 13 50 50 H 0.97004 * 119.99652 * 359.97438 * 19 17 16 51 51 H 0.97000 * 120.00371 * 0.28325 * 23 22 20 52 52 H 1.09003 * 110.36790 * 36.99410 * 28 8 6 53 53 H 1.08997 * 110.36608 * 274.67919 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5045 -0.9554 0.9704 6 6 4.0446 -1.7407 2.1376 7 8 3.2962 -2.1127 3.0166 8 7 5.3593 -2.0296 2.2049 9 6 6.3734 -1.6431 1.2131 10 6 7.7251 -2.2139 1.6927 11 6 7.2986 -3.3696 2.6360 12 1 7.0727 -4.2731 2.0696 13 6 8.3731 -3.6414 3.6909 14 7 9.5532 -4.2329 3.0465 15 6 9.2470 -5.5650 2.5083 16 6 10.6883 -4.2894 3.9773 17 6 11.9374 -4.6675 3.2238 18 8 11.8870 -4.8704 2.0290 19 7 13.1105 -4.7811 3.8776 20 6 14.2470 -5.1245 3.1920 21 1 14.2022 -5.3044 2.1281 22 6 15.4565 -5.2411 3.8661 23 7 15.5120 -5.0168 5.1597 24 14 17.0049 -5.7097 2.9321 25 1 18.1536 -5.7603 3.8718 26 1 16.8199 -7.0428 2.3043 27 1 17.2720 -4.6988 1.8777 28 6 6.0185 -2.7868 3.2846 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0828 1.3432 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5089 -1.7407 1.1755 36 1 1.7975 -0.2249 2.0628 37 1 3.9909 0.0193 0.9324 38 1 3.7023 -1.4966 0.0452 39 1 6.1189 -2.0627 0.2399 40 1 6.4319 -0.5567 1.1469 41 1 8.2902 -1.4587 2.2390 42 1 8.3033 -2.5962 0.8515 43 1 7.9823 -4.3324 4.4378 44 1 8.6535 -2.7052 4.1734 45 1 8.9943 -6.2385 3.3272 46 1 8.4029 -5.4945 1.8222 47 1 10.1166 -5.9505 1.9759 48 1 10.4895 -5.0342 4.7480 49 1 10.8259 -3.3132 4.4422 50 1 13.1508 -4.6191 4.8332 51 1 14.7079 -4.7739 5.6448 52 1 5.3707 -3.5907 3.6343 53 1 6.2794 -2.1230 4.1088 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567736199.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:44 Heat of formation + Delta-G solvation = -80.152447 kcal Electronic energy + Delta-G solvation = -29434.924662 eV Core-core repulsion = 25340.779484 eV Total energy + Delta-G solvation = -4094.145178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27265 -40.48554 -39.24555 -38.24039 -37.42556 -36.17447 -33.48936 -33.09622 -32.08166 -30.47122 -29.33351 -28.49643 -27.92524 -26.60577 -25.82253 -24.13528 -23.41219 -22.11135 -21.31188 -21.06733 -20.09905 -19.90690 -18.31067 -18.18131 -17.44060 -17.08397 -16.77459 -16.60412 -16.43939 -16.09149 -15.77071 -15.60797 -15.33578 -15.33273 -15.18406 -15.05156 -14.50847 -14.23229 -13.82966 -13.76523 -13.68722 -13.47923 -13.31519 -13.29036 -13.02230 -12.79790 -12.72738 -12.63500 -12.61730 -12.45870 -12.39110 -12.06828 -11.94076 -11.90903 -11.86841 -11.82148 -11.47789 -11.42934 -10.98800 -10.30569 -10.06322 -9.70556 -9.39983 -9.22336 -8.89316 -6.03044 1.54769 1.54833 1.56137 1.83778 1.88035 2.04901 2.41048 2.69367 2.95732 3.19574 3.27321 3.54513 3.64337 3.77945 3.83916 3.92708 4.07101 4.11755 4.27124 4.29479 4.30266 4.34209 4.38331 4.44647 4.45554 4.47502 4.52526 4.59312 4.63470 4.66197 4.67695 4.74175 4.76545 4.86231 4.89852 4.92864 4.99398 5.01662 5.05738 5.15297 5.19490 5.29688 5.39164 5.62586 5.93493 5.96118 6.00624 6.02735 6.16053 6.46613 6.61731 6.79517 7.06948 7.48667 7.98148 8.58472 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.033630 B = 0.001550 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.398274 B =18060.515528 C =18392.216892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.557 5.557 3 C 0.016 3.984 4 C 0.074 3.926 5 C -0.122 4.122 6 C 0.525 3.475 7 O -0.590 6.590 8 N -0.618 5.618 9 C 0.099 3.901 10 C -0.112 4.112 11 C -0.088 4.088 12 H 0.082 0.918 13 C 0.068 3.932 14 N -0.528 5.528 15 C 0.025 3.975 16 C 0.057 3.943 17 C 0.446 3.554 18 O -0.607 6.607 19 N -0.590 5.590 20 C -0.408 4.408 21 H 0.073 0.927 22 C -0.043 4.043 23 N -0.919 5.919 24 Si 1.132 2.868 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.273 1.273 28 C 0.113 3.887 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.024 0.976 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.112 0.888 50 H 0.383 0.617 51 H 0.259 0.741 52 H 0.066 0.934 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.834 11.522 -6.615 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.132 4.132 4 C -0.054 4.054 5 C -0.161 4.161 6 C 0.315 3.685 7 O -0.471 6.471 8 N -0.351 5.351 9 C -0.023 4.023 10 C -0.150 4.150 11 C -0.108 4.108 12 H 0.101 0.899 13 C -0.060 4.060 14 N -0.252 5.252 15 C -0.123 4.123 16 C -0.074 4.074 17 C 0.234 3.766 18 O -0.492 6.492 19 N -0.229 5.229 20 C -0.537 4.537 21 H 0.092 0.908 22 C -0.241 4.241 23 N -0.559 5.559 24 Si 0.953 3.047 25 H -0.199 1.199 26 H -0.199 1.199 27 H -0.198 1.198 28 C -0.010 4.010 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.043 0.957 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.130 0.870 50 H 0.217 0.783 51 H 0.070 0.930 52 H 0.084 0.916 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.427 11.015 -7.635 27.862 hybrid contribution -1.999 -0.007 1.994 2.824 sum -26.426 11.007 -5.641 29.177 Atomic orbital electron populations 1.22428 0.86314 1.02747 1.01038 1.62006 1.08913 1.14801 1.42343 1.22550 1.01663 0.87993 1.00985 1.21724 0.94012 0.98473 0.91207 1.21567 0.96160 1.01813 0.96607 1.20824 0.80212 0.79642 0.87814 1.90692 1.57640 1.55989 1.42757 1.48611 1.06962 1.54704 1.24847 1.22299 0.86818 1.01162 0.91979 1.22542 0.95415 0.97081 0.99941 1.22244 0.92760 0.99089 0.96681 0.89932 1.22095 0.88946 1.00105 0.94871 1.61487 1.04819 1.23579 1.35336 1.22456 1.01966 0.88560 0.99299 1.21752 0.89052 1.03171 0.93408 1.20776 0.85244 0.82323 0.88246 1.90468 1.86226 1.55618 1.16854 1.42011 1.07696 1.62972 1.10262 1.20504 0.88583 1.49056 0.95540 0.90845 1.27763 1.04022 0.95485 0.96787 1.70972 1.31439 1.45418 1.08027 0.82640 0.71038 0.77206 0.73863 1.19899 1.19900 1.19818 1.22157 0.92976 0.95480 0.90385 0.95743 0.89893 0.91259 0.90219 0.90155 0.95809 0.91330 0.95413 0.86921 0.86654 0.89831 0.89265 0.90252 0.90067 0.93755 0.89242 0.95750 0.89977 0.92730 0.91708 0.87013 0.78277 0.93033 0.91590 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 127.69 1.22 1.48 16 2 N -0.56 -7.43 5.02 -948.83 -4.76 -12.19 16 3 C 0.02 0.16 9.32 127.69 1.19 1.35 16 4 C 0.07 1.19 4.25 86.31 0.37 1.56 16 5 C -0.12 -1.65 4.82 29.85 0.14 -1.50 16 6 C 0.52 10.71 7.85 87.65 0.69 11.40 16 7 O -0.59 -16.98 16.24 -3.05 -0.05 -17.03 16 8 N -0.62 -10.91 3.33 -811.76 -2.70 -13.61 16 9 C 0.10 1.26 6.49 86.75 0.56 1.83 16 10 C -0.11 -1.84 6.32 31.80 0.20 -1.64 16 11 C -0.09 -1.59 2.94 -9.41 -0.03 -1.62 16 12 H 0.08 1.60 6.34 -2.39 -0.02 1.58 16 13 C 0.07 1.38 4.40 86.31 0.38 1.76 16 14 N -0.53 -15.28 4.39 -927.07 -4.07 -19.35 16 15 C 0.03 0.75 9.03 127.69 1.15 1.90 16 16 C 0.06 1.85 5.45 85.56 0.47 2.32 16 17 C 0.45 20.50 7.51 87.66 0.66 21.16 16 18 O -0.61 -32.46 13.88 -3.08 -0.04 -32.51 16 19 N -0.59 -29.41 5.28 -306.98 -1.62 -31.03 16 20 C -0.41 -23.00 9.68 84.04 0.81 -22.18 16 21 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 22 C -0.04 -2.29 5.50 84.92 0.47 -1.82 16 23 N -0.92 -50.95 13.68 21.66 0.30 -50.65 16 24 Si 1.13 48.12 29.92 68.60 2.05 50.18 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 C 0.11 2.07 6.38 86.85 0.55 2.62 16 29 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.08 0.63 6.47 -2.39 -0.02 0.61 16 33 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.02 0.25 8.14 -2.38 -0.02 0.23 16 35 H 0.07 1.28 8.02 -2.38 -0.02 1.26 16 36 H 0.03 0.52 8.08 -2.39 -0.02 0.50 16 37 H 0.11 1.09 6.55 -2.38 -0.02 1.07 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 1.32 7.97 -2.39 -0.02 1.30 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 44 H 0.09 1.63 7.83 -2.39 -0.02 1.61 16 45 H 0.02 0.66 8.14 -2.39 -0.02 0.65 16 46 H 0.08 2.07 6.23 -2.39 -0.01 2.05 16 47 H 0.05 2.11 5.88 -2.38 -0.01 2.10 16 48 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 49 H 0.11 3.09 7.93 -2.39 -0.02 3.07 16 50 H 0.38 17.58 6.73 -92.71 -0.62 16.95 16 51 H 0.26 13.85 6.78 -92.71 -0.63 13.23 16 52 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 53 H 0.07 1.29 8.03 -2.39 -0.02 1.27 16 Total: -1.00 -74.52 418.19 -1.65 -76.17 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.41 Total: 31.42 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 8.84 Total: 18.61 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -12.86 Total: -126.84 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -0.09 Total: -49.54 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.05 Total: 50.18 kcal Total: -74.52 -1.65 -76.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567736199.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.984 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds