Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99814 * 2 1 4 4 C 1.46903 * 110.99810 * 123.95192 * 2 1 3 5 5 C 1.53001 * 109.47414 * 66.04763 * 4 2 1 6 6 C 1.50695 * 109.47261 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99921 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00085 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00025 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.47077 * 176.03430 * 9 8 6 11 11 N 1.46898 * 110.01508 * 303.76166 * 10 9 8 12 12 C 1.46898 * 110.99806 * 305.54597 * 11 10 9 13 13 C 1.50695 * 109.46914 * 185.17149 * 12 11 10 14 14 O 1.21296 * 120.00290 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99886 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47030 * 89.99677 * 20 18 16 22 22 H 1.48503 * 109.47037 * 209.99959 * 20 18 16 23 23 H 1.48503 * 109.46826 * 330.00061 * 20 18 16 24 24 C 1.54263 * 110.02930 * 182.31402 * 10 9 8 25 25 C 1.54887 * 104.19615 * 217.10415 * 24 10 9 26 26 C 1.54892 * 102.75013 * 37.94767 * 25 24 10 27 27 C 1.53882 * 110.03099 * 65.15077 * 10 9 8 28 28 H 1.09001 * 109.46922 * 296.04788 * 1 2 3 29 29 H 1.08995 * 109.47411 * 56.05100 * 1 2 3 30 30 H 1.09000 * 109.47365 * 176.05061 * 1 2 3 31 31 H 1.09006 * 109.47099 * 183.95624 * 3 2 1 32 32 H 1.09001 * 109.47049 * 303.95185 * 3 2 1 33 33 H 1.08995 * 109.47498 * 63.95663 * 3 2 1 34 34 H 1.09001 * 109.47299 * 306.04255 * 4 2 1 35 35 H 1.09004 * 109.46998 * 186.04787 * 4 2 1 36 36 H 1.08998 * 109.46693 * 59.99917 * 5 4 2 37 37 H 1.09004 * 109.47057 * 299.99987 * 5 4 2 38 38 H 0.97003 * 120.00144 * 359.97438 * 8 6 5 39 39 H 1.08992 * 109.47583 * 56.03299 * 9 8 6 40 40 H 1.09007 * 109.46845 * 296.03008 * 9 8 6 41 41 H 1.00896 * 111.00361 * 69.50588 * 11 10 9 42 42 H 1.08994 * 109.47559 * 305.17352 * 12 11 10 43 43 H 1.09006 * 109.46908 * 65.17333 * 12 11 10 44 44 H 0.97001 * 119.99877 * 0.02562 * 15 13 12 45 45 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 46 46 H 1.08995 * 110.49367 * 335.78490 * 24 10 9 47 47 H 1.09007 * 110.48049 * 98.43043 * 24 10 9 48 48 H 1.09008 * 110.75970 * 279.63544 * 25 24 10 49 49 H 1.09004 * 110.75773 * 156.26357 * 25 24 10 50 50 H 1.09002 * 110.48752 * 203.38225 * 26 25 24 51 51 H 1.09001 * 110.48395 * 80.73526 * 26 25 24 52 52 H 1.08991 * 110.03244 * 238.56899 * 27 10 9 53 53 H 1.09003 * 110.02934 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9705 6 6 2.1720 -3.0284 2.1372 7 8 2.7882 -2.4631 3.0157 8 7 1.9708 -4.3594 2.2044 9 6 2.4958 -5.1232 3.3390 10 6 2.0476 -6.5815 3.2231 11 7 0.5829 -6.6520 3.1361 12 6 -0.0457 -5.9514 4.2639 13 6 -1.5383 -6.1521 4.2107 14 8 -2.0301 -6.8140 3.3212 15 7 -2.3270 -5.5960 5.1517 16 6 -3.6849 -5.7790 5.1037 17 1 -4.1226 -6.3684 4.3116 18 6 -4.4979 -5.2053 6.0735 19 7 -3.9653 -4.4869 7.0364 20 14 -6.3481 -5.4540 6.0077 21 1 -6.7117 -6.6708 6.7772 22 1 -7.0276 -4.2731 6.5986 23 1 -6.7758 -5.6157 4.5948 24 6 2.5450 -7.3856 4.4420 25 6 2.9175 -8.7706 3.8572 26 6 3.5417 -8.4064 2.4871 27 6 2.6813 -7.2306 1.9801 28 1 -0.3633 0.4513 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3872 2.0629 35 1 3.0797 -0.6611 1.1757 36 1 2.0659 -2.6213 0.0453 37 1 0.5472 -2.3475 0.9324 38 1 1.4777 -4.8114 1.5020 39 1 2.1168 -4.6994 4.2689 40 1 3.5849 -5.0764 3.3356 41 1 0.2550 -6.2860 2.2549 42 1 0.3414 -6.3509 5.2011 43 1 0.1802 -4.8869 4.2018 44 1 -1.9338 -5.0664 5.8629 45 1 -4.5329 -4.0867 7.7137 46 1 3.4211 -6.9091 4.8818 47 1 1.7515 -7.4852 5.1828 48 1 2.0277 -9.3861 3.7249 49 1 3.6463 -9.2747 4.4920 50 1 3.4755 -9.2510 1.8012 51 1 4.5787 -8.0947 2.6112 52 1 1.9021 -7.5986 1.3128 53 1 3.3085 -6.5067 1.4597 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666787109.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -100.250791 kcal Electronic energy + Delta-G solvation = -30741.155958 eV Core-core repulsion = 26646.139250 eV Total energy + Delta-G solvation = -4095.016708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40902 -40.32018 -39.56193 -38.30073 -36.07568 -35.72388 -34.55911 -33.25271 -32.51960 -30.18557 -29.67627 -28.52188 -28.06857 -26.63974 -25.75199 -24.74313 -22.47901 -21.78498 -21.15560 -20.85691 -20.06877 -19.83627 -18.54437 -17.97209 -17.22746 -17.08404 -16.86812 -16.47146 -16.35090 -16.09573 -15.95354 -15.72231 -15.60497 -15.52845 -15.15068 -14.71807 -14.58754 -14.13229 -14.08774 -13.94759 -13.70393 -13.50907 -13.33766 -13.08297 -12.83989 -12.78701 -12.64150 -12.51451 -12.43556 -12.28261 -12.19381 -12.09282 -11.96322 -11.90591 -11.79560 -11.68217 -11.50820 -11.33185 -10.98331 -10.35802 -10.17727 -10.02679 -9.43461 -9.36650 -8.47445 -5.96538 1.37020 1.40637 1.53510 1.57052 2.02800 2.06016 2.27808 2.84980 3.02285 3.19494 3.44878 3.58398 3.65145 3.77826 3.88720 3.92066 4.09662 4.22183 4.25495 4.30679 4.35827 4.38544 4.44657 4.48168 4.55112 4.57244 4.61424 4.63903 4.66831 4.74663 4.85382 4.86912 4.91172 4.94325 4.97768 5.02944 5.03243 5.11898 5.15195 5.28388 5.30482 5.39320 5.39809 5.58707 5.89085 5.93873 5.99343 6.09088 6.38717 6.44076 6.58130 7.11356 7.15636 7.54710 8.09424 8.69974 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006253 B = 0.003626 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4476.488767 B = 7719.995016 C =11366.628991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.552 5.552 3 C 0.022 3.978 4 C 0.074 3.926 5 C -0.131 4.131 6 C 0.514 3.486 7 O -0.584 6.584 8 N -0.719 5.719 9 C 0.096 3.904 10 C 0.108 3.892 11 N -0.652 5.652 12 C 0.064 3.936 13 C 0.442 3.558 14 O -0.617 6.617 15 N -0.575 5.575 16 C -0.332 4.332 17 H 0.081 0.919 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.112 4.112 28 H 0.018 0.982 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.409 0.591 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.344 0.656 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.393 0.607 45 H 0.277 0.723 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.073 0.927 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.989 3.225 -12.340 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.276 5.276 3 C -0.126 4.126 4 C -0.054 4.054 5 C -0.171 4.171 6 C 0.301 3.699 7 O -0.464 6.464 8 N -0.371 5.371 9 C -0.030 4.030 10 C 0.016 3.984 11 N -0.285 5.285 12 C -0.068 4.068 13 C 0.229 3.771 14 O -0.503 6.503 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.817 3.183 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.150 4.150 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.120 0.880 38 H 0.246 0.754 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.164 0.836 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.227 0.773 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.092 0.908 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.120 2.441 -12.293 21.217 hybrid contribution -1.355 1.461 1.093 2.273 sum 15.765 3.903 -11.200 19.728 Atomic orbital electron populations 1.22546 0.86856 1.03070 1.00870 1.62045 1.08598 1.14758 1.42203 1.22446 1.01254 0.87920 1.00957 1.21730 1.00461 0.92254 0.90990 1.21616 1.03431 0.94665 0.97348 1.21058 0.78794 0.82394 0.87631 1.90692 1.43133 1.70452 1.42100 1.45925 1.57506 1.07699 1.25971 1.22135 0.99589 0.92262 0.89028 1.22012 0.86395 0.91637 0.98335 1.60318 1.04442 1.59387 1.04313 1.21513 0.90401 0.97443 0.97446 1.20771 0.89654 0.83131 0.83546 1.90488 1.76842 1.44575 1.38361 1.41961 1.06708 1.46746 1.25834 1.19672 0.82864 1.31758 1.11817 0.90096 1.26061 1.04884 0.95696 0.94736 1.69689 1.38142 1.33948 1.14568 0.84927 0.76731 0.78105 0.78587 1.19671 1.19694 1.19488 1.22457 1.00704 0.96231 0.95898 1.22390 1.00231 0.95914 0.96845 1.22287 0.99037 0.97509 0.96367 1.22268 0.99203 0.98091 0.95451 0.96327 0.89844 0.90659 0.90712 0.89818 0.96058 0.96115 0.90508 0.85655 0.87967 0.75421 0.92935 0.90421 0.83606 0.88271 0.92888 0.77347 0.91381 0.89761 0.92246 0.92670 0.90460 0.90941 0.90418 0.90837 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.32 127.69 1.19 1.44 16 2 N -0.55 -10.20 5.02 -948.84 -4.76 -14.96 16 3 C 0.02 0.34 9.57 127.69 1.22 1.57 16 4 C 0.07 1.57 4.25 86.30 0.37 1.93 16 5 C -0.13 -2.42 5.62 29.85 0.17 -2.25 16 6 C 0.51 12.43 7.83 87.66 0.69 13.12 16 7 O -0.58 -18.93 15.98 -3.05 -0.05 -18.98 16 8 N -0.72 -14.78 5.06 -463.05 -2.34 -17.13 16 9 C 0.10 2.11 3.56 86.38 0.31 2.42 16 10 C 0.11 2.28 0.55 4.26 0.00 2.28 16 11 N -0.65 -18.71 5.47 -470.56 -2.58 -21.28 16 12 C 0.06 2.21 5.28 85.56 0.45 2.66 16 13 C 0.44 20.85 7.83 87.66 0.69 21.54 16 14 O -0.62 -33.33 15.89 -3.08 -0.05 -33.38 16 15 N -0.58 -29.82 5.29 -306.98 -1.62 -31.44 16 16 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 17 H 0.08 4.88 7.16 -2.91 -0.02 4.85 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 19 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 20 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C -0.11 -2.39 5.83 31.67 0.18 -2.21 16 25 C -0.12 -2.17 6.91 31.89 0.22 -1.95 16 26 C -0.11 -1.74 6.83 31.67 0.22 -1.53 16 27 C -0.11 -1.89 5.74 31.32 0.18 -1.71 16 28 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 30 H 0.07 1.24 6.47 -2.39 -0.02 1.22 16 31 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 32 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.02 0.53 8.08 -2.39 -0.02 0.51 16 35 H 0.08 1.68 8.02 -2.39 -0.02 1.66 16 36 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.80 6.55 -2.39 -0.02 1.79 16 38 H 0.41 6.90 7.17 -92.71 -0.66 6.23 16 39 H 0.05 1.41 6.73 -2.39 -0.02 1.39 16 40 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 41 H 0.34 9.79 7.34 -89.70 -0.66 9.13 16 42 H 0.10 3.23 6.24 -2.39 -0.01 3.21 16 43 H 0.05 1.76 6.66 -2.38 -0.02 1.75 16 44 H 0.39 19.77 7.90 -92.71 -0.73 19.04 16 45 H 0.28 14.22 8.31 -92.70 -0.77 13.45 16 46 H 0.08 1.49 7.85 -2.39 -0.02 1.48 16 47 H 0.06 1.48 6.18 -2.38 -0.01 1.47 16 48 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 49 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.07 1.35 7.85 -2.39 -0.02 1.33 16 53 H 0.08 1.14 7.54 -2.39 -0.02 1.12 16 Total: -1.00 -71.25 416.49 -3.06 -74.31 By element: Atomic # 1 Polarization: 50.18 SS G_CDS: -1.13 Total: 49.05 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 7.16 Total: 18.96 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -11.02 Total: -135.06 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.10 Total: -52.36 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -71.25 -3.06 -74.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666787109.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.943 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds