Wall clock time and date at job start Sat Apr 11 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99809 * 2 1 4 4 C 1.46903 * 111.00097 * 123.95408 * 2 1 3 5 5 C 1.53001 * 109.47424 * 170.00581 * 4 2 1 6 6 C 1.50698 * 109.47194 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00063 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00006 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00162 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.01562 * 34.93635 * 9 8 6 11 11 C 1.54272 * 110.03335 * 273.54637 * 9 8 6 12 12 C 1.54889 * 104.19810 * 217.10549 * 11 9 8 13 13 C 1.54884 * 102.74652 * 37.94198 * 12 11 9 14 14 H 1.08994 * 110.49047 * 80.87304 * 13 12 11 15 15 C 1.53007 * 110.48467 * 203.38018 * 13 12 11 16 16 N 1.46898 * 109.46873 * 291.75964 * 15 13 12 17 17 C 1.46903 * 110.99849 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47398 * 179.97438 * 17 16 15 19 19 O 1.21297 * 119.99867 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00325 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99974 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00583 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00110 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 179.72236 * 23 21 20 26 26 H 1.48497 * 109.47173 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46866 * 120.00218 * 25 23 21 28 28 H 1.48501 * 109.47438 * 240.00339 * 25 23 21 29 29 C 1.54082 * 109.93118 * 156.41626 * 9 8 6 30 30 H 1.08995 * 109.47202 * 296.04451 * 1 2 3 31 31 H 1.08997 * 109.46797 * 56.05329 * 1 2 3 32 32 H 1.09001 * 109.46772 * 176.04832 * 1 2 3 33 33 H 1.09003 * 109.46764 * 183.95021 * 3 2 1 34 34 H 1.09000 * 109.47049 * 303.95177 * 3 2 1 35 35 H 1.09004 * 109.47101 * 63.95422 * 3 2 1 36 36 H 1.09000 * 109.47256 * 49.99805 * 4 2 1 37 37 H 1.09006 * 109.47072 * 290.00341 * 4 2 1 38 38 H 1.08997 * 109.46826 * 59.99583 * 5 4 2 39 39 H 1.08999 * 109.46602 * 299.99592 * 5 4 2 40 40 H 0.97003 * 120.00098 * 0.02562 * 8 6 5 41 41 H 1.09006 * 110.48218 * 98.42643 * 11 9 8 42 42 H 1.08998 * 110.48856 * 335.78649 * 11 9 8 43 43 H 1.09005 * 110.75447 * 279.62826 * 12 11 9 44 44 H 1.08994 * 110.75527 * 156.26222 * 12 11 9 45 45 H 1.09007 * 109.47030 * 171.75849 * 15 13 12 46 46 H 1.09001 * 109.46922 * 51.76218 * 15 13 12 47 47 H 1.00898 * 111.00544 * 56.04865 * 16 15 13 48 48 H 1.09005 * 109.47310 * 59.99621 * 17 16 15 49 49 H 1.08999 * 109.47201 * 300.00515 * 17 16 15 50 50 H 0.97005 * 119.99841 * 0.02562 * 20 18 17 51 51 H 0.97000 * 120.00377 * 179.97438 * 24 23 21 52 52 H 1.08998 * 110.15991 * 0.12142 * 29 9 8 53 53 H 1.09001 * 110.00725 * 238.62900 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9705 6 6 4.0446 -1.7405 2.1378 7 8 3.2964 -2.1118 3.0171 8 7 5.3592 -2.0302 2.2046 9 6 5.8843 -2.7931 3.3397 10 1 5.1510 -3.5312 3.6645 11 6 6.2264 -1.8403 4.5038 12 6 7.5111 -2.4439 5.1238 13 6 8.2906 -2.9389 3.8803 14 1 8.8190 -2.1114 3.4069 15 6 9.2720 -4.0464 4.2694 16 7 10.3428 -3.4816 5.1015 17 6 11.3058 -4.5186 5.4955 18 6 12.3873 -3.9030 6.3455 19 8 12.3589 -2.7169 6.5979 20 7 13.3866 -4.6701 6.8245 21 6 14.3707 -4.1099 7.5973 22 1 14.3450 -3.0540 7.8227 23 6 15.4007 -4.9009 8.0916 24 7 15.4317 -6.1858 7.8178 25 14 16.7458 -4.1362 9.1381 26 1 16.4856 -2.6825 9.2938 27 1 16.7599 -4.7821 10.4753 28 1 18.0608 -4.3362 8.4778 29 6 7.1989 -3.4907 2.9404 30 1 -0.3633 0.4512 0.9233 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0708 33 1 3.0828 1.3432 -0.0708 34 1 1.5898 1.9163 -0.8525 35 1 1.7043 1.8724 0.9233 36 1 1.5090 -1.7407 1.1757 37 1 1.7975 -0.2248 2.0629 38 1 3.9909 0.0194 0.9324 39 1 3.7025 -1.4965 0.0453 40 1 5.9577 -1.7329 1.5015 41 1 5.4191 -1.8275 5.2361 42 1 6.4194 -0.8349 4.1298 43 1 7.2672 -3.2767 5.7835 44 1 8.0782 -1.6808 5.6568 45 1 9.7037 -4.4825 3.3684 46 1 8.7450 -4.8184 4.8301 47 1 9.9633 -3.0146 5.9114 48 1 11.7516 -4.9584 4.6033 49 1 10.7926 -5.2936 6.0648 50 1 13.4099 -5.6185 6.6218 51 1 16.1509 -6.7380 8.1624 52 1 7.4468 -3.2603 1.9043 53 1 7.1036 -4.5687 3.0711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676950736.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:24 Heat of formation + Delta-G solvation = -110.312565 kcal Electronic energy + Delta-G solvation = -28559.541217 eV Core-core repulsion = 24464.088198 eV Total energy + Delta-G solvation = -4095.453019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10959 -40.18030 -39.35181 -38.23154 -36.61727 -35.83198 -34.48470 -33.25748 -32.39634 -30.73646 -29.33684 -28.48942 -27.93291 -26.27253 -25.61928 -24.02951 -22.57315 -21.41664 -21.25410 -21.17684 -20.66848 -19.88399 -18.30492 -17.86704 -17.36057 -17.02217 -16.92681 -16.48254 -16.19850 -16.01592 -15.80285 -15.76702 -15.57074 -15.37354 -15.08978 -14.63657 -14.40302 -14.25583 -14.07913 -13.99606 -13.52164 -13.36617 -13.30110 -13.09072 -12.97822 -12.76717 -12.72115 -12.62616 -12.48890 -12.40654 -12.30748 -12.11627 -11.95051 -11.90829 -11.71081 -11.55507 -11.51651 -11.43700 -10.86539 -10.33934 -10.03298 -10.01121 -9.39430 -9.28861 -8.46667 -5.95335 1.36812 1.42209 1.56393 1.65297 2.05641 2.16994 2.29641 2.94792 3.06146 3.20830 3.52830 3.55684 3.72950 3.83047 3.89825 3.98299 4.15115 4.28439 4.32323 4.38109 4.41514 4.47087 4.48642 4.52395 4.59068 4.60026 4.60899 4.64101 4.65560 4.69006 4.70424 4.82524 4.91574 4.93247 4.96217 4.99812 5.06342 5.07490 5.09446 5.21118 5.30796 5.41354 5.49648 5.63281 5.91562 5.97630 6.03411 6.14092 6.44232 6.59583 6.60605 7.13032 7.29564 7.56700 8.12098 8.70999 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.043332 B = 0.001306 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.022695 B =21433.518083 C =21652.686618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.556 5.556 3 C 0.015 3.985 4 C 0.072 3.928 5 C -0.128 4.128 6 C 0.511 3.489 7 O -0.589 6.589 8 N -0.712 5.712 9 C 0.144 3.856 10 H 0.073 0.927 11 C -0.126 4.126 12 C -0.122 4.122 13 C -0.081 4.081 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.270 1.270 29 C -0.112 4.112 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.021 0.979 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.416 0.584 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.342 0.658 48 H 0.105 0.895 49 H 0.064 0.936 50 H 0.397 0.603 51 H 0.278 0.722 52 H 0.094 0.906 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.096 7.162 -18.665 32.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.280 5.280 3 C -0.133 4.133 4 C -0.056 4.056 5 C -0.168 4.168 6 C 0.299 3.701 7 O -0.469 6.469 8 N -0.364 5.364 9 C 0.039 3.961 10 H 0.091 0.909 11 C -0.165 4.165 12 C -0.160 4.160 13 C -0.100 4.100 14 H 0.100 0.900 15 C -0.062 4.062 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.150 4.150 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.161 0.839 48 H 0.123 0.877 49 H 0.082 0.918 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.112 0.888 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.977 7.505 -18.813 32.941 hybrid contribution 0.227 -0.201 1.950 1.973 sum -25.750 7.304 -16.864 31.635 Atomic orbital electron populations 1.22429 0.86488 1.02750 1.00935 1.62031 1.08790 1.14734 1.42402 1.22556 1.01776 0.88058 1.00859 1.21742 0.94495 0.98386 0.91011 1.21600 0.95941 1.02101 0.97119 1.21134 0.82226 0.79268 0.87513 1.90699 1.58683 1.55140 1.42422 1.46148 1.08468 1.56175 1.25622 1.21569 0.95561 0.92981 0.85987 0.90892 1.22675 0.97140 0.99325 0.97380 1.22538 0.95565 1.00399 0.97495 1.21898 0.94503 0.97814 0.95746 0.90034 1.22124 0.90886 0.95797 0.97373 1.60109 1.17320 1.28486 1.25639 1.21543 0.92818 0.93522 0.98961 1.20936 0.85118 0.87154 0.84387 1.90488 1.78949 1.17628 1.63981 1.41937 1.22197 1.11104 1.45796 1.19711 1.03390 0.95382 1.27923 0.90378 1.26023 1.00393 0.95719 0.99004 1.69675 1.34715 1.05543 1.46202 0.84881 0.77524 0.78141 0.77856 1.19810 1.19601 1.19562 1.22401 0.91530 1.00743 1.00375 0.95930 0.89960 0.91184 0.89998 0.90252 0.96025 0.91297 0.95747 0.86895 0.86104 0.74604 0.92723 0.91052 0.91597 0.91959 0.89988 0.94453 0.83924 0.87694 0.91800 0.76960 0.91296 0.88787 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.45 16 2 N -0.56 -6.68 5.02 -948.82 -4.76 -11.44 16 3 C 0.02 0.14 9.32 127.69 1.19 1.33 16 4 C 0.07 1.03 4.25 86.30 0.37 1.40 16 5 C -0.13 -1.30 5.62 29.85 0.17 -1.14 16 6 C 0.51 8.42 7.82 87.66 0.69 9.10 16 7 O -0.59 -15.29 15.66 -3.02 -0.05 -15.34 16 8 N -0.71 -8.75 5.05 -438.77 -2.22 -10.96 16 9 C 0.14 2.25 3.23 45.79 0.15 2.40 16 10 H 0.07 1.44 7.61 -2.39 -0.02 1.42 16 11 C -0.13 -2.30 6.52 31.67 0.21 -2.09 16 12 C -0.12 -2.35 5.62 31.88 0.18 -2.18 16 13 C -0.08 -1.41 3.10 -9.72 -0.03 -1.44 16 14 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 15 C 0.07 1.40 5.03 86.31 0.43 1.84 16 16 N -0.68 -20.89 6.13 -517.90 -3.17 -24.06 16 17 C 0.06 2.17 6.17 85.56 0.53 2.69 16 18 C 0.44 20.84 7.82 87.66 0.69 21.53 16 19 O -0.62 -34.81 15.78 -3.08 -0.05 -34.86 16 20 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 21 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 25 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 C -0.11 -1.41 6.15 31.39 0.19 -1.21 16 30 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16 32 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 33 H 0.08 0.53 6.47 -2.39 -0.02 0.51 16 34 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 35 H 0.02 0.22 8.14 -2.38 -0.02 0.20 16 36 H 0.07 1.16 8.02 -2.39 -0.02 1.14 16 37 H 0.02 0.43 8.08 -2.38 -0.02 0.41 16 38 H 0.11 0.74 6.55 -2.39 -0.02 0.72 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.42 2.56 8.29 -92.71 -0.77 1.79 16 41 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 43 H 0.07 1.29 8.00 -2.38 -0.02 1.27 16 44 H 0.06 1.37 8.02 -2.39 -0.02 1.35 16 45 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 47 H 0.34 11.22 7.62 -89.70 -0.68 10.53 16 48 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 49 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.40 19.32 7.90 -92.70 -0.73 18.58 16 51 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 52 H 0.09 0.83 7.61 -2.39 -0.02 0.81 16 53 H 0.08 0.99 7.84 -2.39 -0.02 0.98 16 Total: -1.00 -73.84 425.31 -3.57 -77.42 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -1.27 Total: 39.49 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.26 Total: 15.23 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -11.49 Total: -126.94 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.10 Total: -50.20 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -73.84 -3.57 -77.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676950736.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.897 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds