Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99543 * 2 1 4 4 C 1.46894 * 110.99947 * 123.95688 * 2 1 3 5 5 C 1.52997 * 109.47515 * 66.04655 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 O 1.21273 * 120.00140 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.47029 * 125.64556 * 359.68841 * 9 7 6 11 11 C 1.54335 * 107.25970 * 178.85288 * 10 9 7 12 12 C 1.55157 * 103.02283 * 338.13530 * 11 10 9 13 13 H 1.08996 * 111.00938 * 277.23391 * 12 11 10 14 14 C 1.53006 * 111.03463 * 153.39519 * 12 11 10 15 15 N 1.46902 * 109.46761 * 72.79037 * 14 12 11 16 16 C 1.46897 * 110.99705 * 179.97438 * 15 14 12 17 17 C 1.50708 * 109.47031 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99781 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99835 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99689 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00110 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00059 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00143 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47381 * 89.99833 * 24 22 20 26 26 H 1.48506 * 109.46950 * 209.99833 * 24 22 20 27 27 H 1.48505 * 109.47258 * 329.99373 * 24 22 20 28 28 C 1.47421 * 125.64901 * 179.97438 * 9 7 6 29 29 H 1.08997 * 109.47044 * 296.04083 * 1 2 3 30 30 H 1.09001 * 109.47499 * 56.04429 * 1 2 3 31 31 H 1.09003 * 109.47124 * 176.04281 * 1 2 3 32 32 H 1.09002 * 109.46576 * 183.95470 * 3 2 1 33 33 H 1.09002 * 109.47680 * 303.94979 * 3 2 1 34 34 H 1.08997 * 109.47173 * 63.95741 * 3 2 1 35 35 H 1.09002 * 109.47104 * 306.04387 * 4 2 1 36 36 H 1.08998 * 109.46828 * 186.05219 * 4 2 1 37 37 H 1.09002 * 109.47153 * 59.99762 * 5 4 2 38 38 H 1.09001 * 109.46832 * 299.99953 * 5 4 2 39 39 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 40 40 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 41 41 H 1.08994 * 109.88052 * 298.39407 * 10 9 7 42 42 H 1.08993 * 109.88202 * 59.56327 * 10 9 7 43 43 H 1.08999 * 110.84691 * 219.67348 * 11 10 9 44 44 H 1.08995 * 110.67211 * 96.52282 * 11 10 9 45 45 H 1.08998 * 109.47052 * 192.78312 * 14 12 11 46 46 H 1.08993 * 109.47480 * 312.78957 * 14 12 11 47 47 H 1.00901 * 110.99731 * 303.94924 * 15 14 12 48 48 H 1.08998 * 109.47327 * 299.99863 * 16 15 14 49 49 H 1.09000 * 109.47213 * 59.99839 * 16 15 14 50 50 H 0.96994 * 119.99991 * 359.97438 * 19 17 16 51 51 H 0.97000 * 120.00174 * 180.02562 * 23 22 20 52 52 H 1.09001 * 110.36259 * 322.92716 * 28 9 7 53 53 H 1.08995 * 110.36906 * 85.14076 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1793 -3.0403 2.1554 7 6 1.8213 -4.4949 1.9903 8 8 1.1899 -4.8576 1.0206 9 7 2.2021 -5.3924 2.9209 10 6 2.9722 -5.0917 4.1367 11 6 3.1457 -6.4170 4.9084 12 6 1.9856 -7.2924 4.3650 13 1 1.0526 -7.0701 4.8829 14 6 2.3256 -8.7806 4.4683 15 7 2.2609 -9.2011 5.8743 16 6 2.5818 -10.6280 6.0122 17 6 2.5060 -11.0218 7.4649 18 8 2.2130 -10.1953 8.3028 19 7 2.7638 -12.2925 7.8330 20 6 2.6943 -12.6508 9.1545 21 1 2.4334 -11.9148 9.9006 22 6 2.9606 -13.9606 9.5341 23 7 3.2785 -14.8561 8.6263 24 14 2.8666 -14.4487 11.3347 25 1 1.4880 -14.8989 11.6543 26 1 3.8221 -15.5546 11.5983 27 1 3.2152 -13.2808 12.1831 28 6 1.9204 -6.8390 2.8854 29 1 -0.3633 0.4511 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0709 33 1 1.5898 1.9164 -0.8525 34 1 1.7043 1.8723 0.9233 35 1 1.5611 -0.3873 2.0627 36 1 3.0797 -0.6610 1.1756 37 1 2.0658 -2.6214 0.0450 38 1 0.5472 -2.3475 0.9322 39 1 3.2636 -2.9355 2.1939 40 1 1.7446 -2.6615 3.0803 41 1 3.9477 -4.6871 3.8670 42 1 2.4285 -4.3750 4.7521 43 1 3.0388 -6.2580 5.9814 44 1 4.1103 -6.8709 4.6814 45 1 1.6101 -9.3582 3.8830 46 1 3.3312 -8.9511 4.0839 47 1 2.8684 -8.6364 6.4489 48 1 1.8678 -11.2182 5.4377 49 1 3.5891 -10.8117 5.6384 50 1 2.9977 -12.9535 7.1629 51 1 3.4640 -15.7706 8.8912 52 1 0.9269 -7.0220 2.4759 53 1 2.6750 -7.3580 2.2944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690733062.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -99.187462 kcal Electronic energy + Delta-G solvation = -28505.070347 eV Core-core repulsion = 24410.099749 eV Total energy + Delta-G solvation = -4094.970599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.18433 -40.14840 -39.09498 -38.42575 -36.61642 -35.79859 -34.29308 -33.29766 -32.79586 -30.46608 -29.19532 -28.49504 -28.08385 -26.47730 -24.92711 -24.03691 -23.49167 -21.72829 -21.40683 -20.95266 -20.09689 -19.88877 -18.13326 -18.05909 -17.35129 -17.07175 -16.78843 -16.43956 -16.40501 -16.11114 -15.86838 -15.69858 -15.43793 -15.18856 -15.13258 -14.70391 -14.57505 -14.24054 -13.86064 -13.72001 -13.46643 -13.42087 -13.33007 -13.27804 -13.14277 -12.95634 -12.82993 -12.69630 -12.60238 -12.41059 -12.35030 -12.23392 -12.12219 -12.03104 -11.66758 -11.63830 -11.54094 -11.49316 -10.92587 -10.33580 -10.00465 -9.67441 -9.31256 -9.30891 -8.45780 -5.94528 1.38991 1.42940 1.55430 1.60861 1.94823 2.06604 2.30135 2.91238 3.01991 3.21888 3.40979 3.55025 3.62567 3.80869 3.94844 4.00203 4.09234 4.24075 4.30913 4.33579 4.35868 4.38169 4.43167 4.49250 4.49755 4.51917 4.57221 4.59841 4.65039 4.68259 4.74072 4.75434 4.77038 4.82241 4.92136 4.99249 5.01083 5.02408 5.15050 5.18391 5.23720 5.34505 5.38863 5.41986 5.89555 6.06685 6.11064 6.11221 6.45158 6.51333 6.61167 7.13171 7.13634 7.57580 8.12611 8.71610 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.001304 C = 0.001285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.862170 B =21475.353343 C =21778.449405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.569 5.569 3 C 0.024 3.976 4 C 0.059 3.941 5 C -0.095 4.095 6 C -0.124 4.124 7 C 0.519 3.481 8 O -0.591 6.591 9 N -0.621 5.621 10 C 0.101 3.899 11 C -0.129 4.129 12 C -0.090 4.090 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.682 5.682 16 C 0.065 3.935 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.112 3.888 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.347 0.653 48 H 0.102 0.898 49 H 0.068 0.932 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.062 0.938 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 27.485 -15.969 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.293 5.293 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.134 4.134 6 C -0.164 4.164 7 C 0.310 3.690 8 O -0.471 6.471 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.167 4.167 12 C -0.109 4.109 13 H 0.100 0.900 14 C -0.055 4.055 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.011 4.011 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.166 0.834 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.080 0.920 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.115 27.383 -16.405 31.941 hybrid contribution 0.465 -0.712 1.027 1.333 sum 1.580 26.671 -15.378 30.828 Atomic orbital electron populations 1.22442 0.87185 1.02231 1.00904 1.61945 1.08553 1.14927 1.43914 1.22414 1.01166 0.87837 1.00931 1.22137 1.00947 0.92455 0.91375 1.21235 1.00793 0.93877 0.97452 1.21613 1.04751 0.88609 1.01443 1.21054 0.78081 0.89038 0.80793 1.90695 1.42539 1.81796 1.32108 1.48664 1.55087 1.08108 1.23597 1.22250 0.96780 0.98311 0.84723 1.22769 0.98580 0.94396 1.00973 1.22211 1.00132 0.94186 0.94386 0.89984 1.21885 1.00651 0.94622 0.88376 1.60016 1.60398 1.02088 1.08942 1.21530 1.01615 0.91355 0.92287 1.20896 0.82283 0.82528 0.91799 1.90484 1.54299 1.51485 1.54644 1.41935 1.61357 1.09249 1.08513 1.19679 1.46290 0.95421 0.85036 0.90261 1.26020 0.96118 0.94957 1.04048 1.69673 1.47026 1.04104 1.35368 0.84944 0.78408 0.77954 0.77136 1.19781 1.19558 1.19634 1.22137 1.01275 0.80972 0.96744 0.95170 0.90849 0.91886 0.90655 0.90971 0.95192 0.93847 0.89389 0.92487 0.92885 0.86299 0.86835 0.88908 0.89661 0.89135 0.89755 0.90548 0.93442 0.83403 0.88015 0.91371 0.76986 0.91322 0.91970 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 127.69 1.19 1.45 16 2 N -0.57 -7.63 5.02 -948.87 -4.76 -12.39 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.06 0.64 4.96 86.30 0.43 1.07 16 5 C -0.10 -1.40 4.43 30.59 0.14 -1.27 16 6 C -0.12 -1.43 4.89 29.85 0.15 -1.28 16 7 C 0.52 10.55 7.85 87.66 0.69 11.24 16 8 O -0.59 -17.59 16.24 -3.01 -0.05 -17.64 16 9 N -0.62 -10.79 3.33 -811.82 -2.70 -13.49 16 10 C 0.10 1.10 6.49 86.73 0.56 1.67 16 11 C -0.13 -1.75 5.90 31.79 0.19 -1.56 16 12 C -0.09 -1.62 3.25 -9.41 -0.03 -1.65 16 13 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 14 C 0.07 1.52 5.19 86.30 0.45 1.97 16 15 N -0.68 -19.82 6.13 -517.92 -3.17 -22.99 16 16 C 0.06 2.11 6.17 85.56 0.53 2.64 16 17 C 0.44 20.37 7.82 87.66 0.69 21.06 16 18 O -0.62 -33.80 15.78 -3.05 -0.05 -33.85 16 19 N -0.57 -29.04 5.29 -306.98 -1.62 -30.66 16 20 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 23 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 24 Si 0.99 42.51 29.55 68.60 2.03 44.54 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 C 0.11 2.12 6.37 86.85 0.55 2.68 16 29 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 31 H 0.06 0.92 6.47 -2.39 -0.02 0.90 16 32 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 33 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 34 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.04 0.41 8.12 -2.39 -0.02 0.39 16 36 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 37 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.05 0.97 6.51 -2.39 -0.02 0.95 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.04 7.91 -2.39 -0.02 1.02 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 0.85 7.97 -2.39 -0.02 0.83 16 47 H 0.35 10.28 7.94 -89.69 -0.71 9.56 16 48 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 49 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.40 19.06 7.90 -92.71 -0.73 18.32 16 51 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 52 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 53 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 Total: -1.00 -74.35 427.52 -2.57 -76.92 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.55 Total: 37.35 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 8.02 Total: 21.26 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -11.97 Total: -128.59 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.10 Total: -51.48 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.35 -2.57 -76.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690733062.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.268 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds