Wall clock time and date at job start Sat Apr 11 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.05138 * 4 2 1 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.47017 * 125.64800 * 359.68971 * 9 7 6 11 11 C 1.54317 * 107.27803 * 180.96857 * 10 9 7 12 12 C 1.55150 * 102.86132 * 22.52713 * 11 10 9 13 13 H 1.09001 * 111.00958 * 82.37842 * 12 11 10 14 14 C 1.52998 * 111.00645 * 206.23045 * 12 11 10 15 15 N 1.46908 * 109.46834 * 287.19961 * 14 12 11 16 16 C 1.46906 * 110.99621 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.46558 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00456 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99654 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99826 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99984 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99918 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99782 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00067 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46970 * 89.99799 * 24 22 20 26 26 H 1.48497 * 109.47224 * 210.00191 * 24 22 20 27 27 H 1.48502 * 109.47185 * 330.00208 * 24 22 20 28 28 C 1.47423 * 125.64938 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 30 30 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 31 31 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 32 32 H 1.08998 * 109.46995 * 183.95294 * 3 2 1 33 33 H 1.09001 * 109.46977 * 303.95046 * 3 2 1 34 34 H 1.08998 * 109.47089 * 63.95199 * 3 2 1 35 35 H 1.09002 * 109.47401 * 306.04845 * 4 2 1 36 36 H 1.09001 * 109.46874 * 186.04858 * 4 2 1 37 37 H 1.09001 * 109.47194 * 299.99524 * 5 4 2 38 38 H 1.08992 * 109.47399 * 59.99697 * 5 4 2 39 39 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 40 40 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 41 41 H 1.09004 * 109.88204 * 300.51498 * 10 9 7 42 42 H 1.09005 * 109.88068 * 61.67886 * 10 9 7 43 43 H 1.09000 * 110.92402 * 264.11405 * 11 10 9 44 44 H 1.08999 * 110.74052 * 140.85674 * 11 10 9 45 45 H 1.09001 * 109.47196 * 47.19266 * 14 12 11 46 46 H 1.09000 * 109.47866 * 167.19801 * 14 12 11 47 47 H 1.00894 * 111.00314 * 56.04181 * 15 14 12 48 48 H 1.08993 * 109.46871 * 299.99388 * 16 15 14 49 49 H 1.08999 * 109.47154 * 60.00156 * 16 15 14 50 50 H 0.96998 * 119.99752 * 0.02562 * 19 17 16 51 51 H 0.97002 * 119.99462 * 179.97438 * 23 22 20 52 52 H 1.09001 * 110.36616 * 274.67341 * 28 9 7 53 53 H 1.09002 * 110.36878 * 36.88341 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9704 6 6 2.1793 -3.0402 2.1556 7 6 1.8203 -4.4945 1.9912 8 8 1.1882 -4.8573 1.0218 9 7 2.2017 -5.3921 2.9214 10 6 2.9735 -5.0918 4.1362 11 6 3.1937 -6.4255 4.8807 12 6 3.0300 -7.4805 3.7550 13 1 3.9538 -7.5932 3.1876 14 6 2.5720 -8.8244 4.3252 15 7 3.6871 -9.4578 5.0418 16 6 3.2831 -10.7532 5.6047 17 6 4.4503 -11.3716 6.3300 18 8 5.5140 -10.7904 6.3741 19 7 4.3120 -12.5703 6.9306 20 6 5.3737 -13.1327 7.5909 21 1 6.3211 -12.6154 7.6294 22 6 5.2313 -14.3687 8.2096 23 7 6.2492 -14.9080 8.8421 24 14 3.5930 -15.2636 8.1424 25 1 3.5556 -16.1380 6.9427 26 1 3.4310 -16.0920 9.3641 27 1 2.4901 -14.2721 8.0668 28 6 1.9201 -6.8388 2.8859 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 3.0827 1.3433 -0.0708 33 1 1.5898 1.9163 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 1.5611 -0.3871 2.0629 36 1 3.0797 -0.6609 1.1757 37 1 0.5472 -2.3475 0.9324 38 1 2.0658 -2.6213 0.0452 39 1 3.2635 -2.9354 2.1940 40 1 1.7446 -2.6613 3.0806 41 1 3.9340 -4.6529 3.8661 42 1 2.4142 -4.4036 4.7700 43 1 2.4401 -6.5679 5.6553 44 1 4.1959 -6.4687 5.3070 45 1 1.7425 -8.6632 5.0137 46 1 2.2479 -9.4730 3.5114 47 1 4.0480 -8.8483 5.7603 48 1 2.4587 -10.6049 6.3022 49 1 2.9636 -11.4153 4.8000 50 1 3.4613 -13.0349 6.8956 51 1 6.1496 -15.7707 9.2743 52 1 0.9382 -7.0446 3.3121 53 1 1.9743 -7.2108 1.8628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690733063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:10 Heat of formation + Delta-G solvation = -94.405534 kcal Electronic energy + Delta-G solvation = -28555.300301 eV Core-core repulsion = 24460.537062 eV Total energy + Delta-G solvation = -4094.763239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.18545 -40.28750 -39.10448 -38.42777 -36.63458 -35.84201 -34.29572 -33.74443 -32.84870 -30.47199 -29.26101 -28.49847 -28.14615 -26.38051 -24.84957 -24.00458 -23.48662 -21.73055 -21.42681 -21.15777 -20.22543 -20.09826 -18.13934 -18.03022 -17.36698 -17.07794 -16.82537 -16.61292 -16.46035 -16.04202 -15.78054 -15.69891 -15.36414 -15.17472 -15.03655 -14.70404 -14.58715 -14.37010 -14.20035 -13.81533 -13.66819 -13.42711 -13.35246 -13.29430 -13.14727 -12.99091 -12.83670 -12.70180 -12.60492 -12.40043 -12.35403 -12.23750 -12.05914 -11.95393 -11.67610 -11.61379 -11.54594 -11.50037 -10.92682 -10.42566 -10.23606 -9.67310 -9.30969 -9.30399 -8.40405 -6.01226 1.31058 1.36825 1.45370 1.60536 1.95032 1.97290 2.23978 2.73564 3.01946 3.16302 3.33769 3.50593 3.62167 3.80950 3.95506 3.99579 4.08436 4.18190 4.24276 4.30405 4.37192 4.39049 4.42412 4.46031 4.49267 4.51296 4.56490 4.58625 4.64895 4.68019 4.73700 4.75970 4.76809 4.82481 4.92955 4.99751 5.00932 5.02283 5.15180 5.18452 5.24260 5.34486 5.39172 5.53754 5.91672 6.05999 6.07246 6.10953 6.43547 6.50999 6.61016 6.89314 7.13036 7.41219 7.97754 8.77250 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.043455 B = 0.001344 C = 0.001319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.192058 B =20824.683913 C =21226.991842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.570 5.570 3 C 0.024 3.976 4 C 0.059 3.941 5 C -0.095 4.095 6 C -0.125 4.125 7 C 0.520 3.480 8 O -0.590 6.590 9 N -0.621 5.621 10 C 0.100 3.900 11 C -0.129 4.129 12 C -0.091 4.091 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.686 5.686 16 C 0.062 3.938 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.276 1.276 27 H -0.230 1.230 28 C 0.112 3.888 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.347 0.653 48 H 0.079 0.921 49 H 0.112 0.888 50 H 0.390 0.610 51 H 0.279 0.721 52 H 0.075 0.925 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 29.314 -12.159 35.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.294 5.294 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.133 4.133 6 C -0.165 4.165 7 C 0.310 3.690 8 O -0.471 6.471 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.167 4.167 12 C -0.111 4.111 13 H 0.099 0.901 14 C -0.054 4.054 15 N -0.319 5.319 16 C -0.071 4.071 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.153 1.153 28 C -0.011 4.011 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.166 0.834 48 H 0.097 0.903 49 H 0.130 0.870 50 H 0.225 0.775 51 H 0.088 0.912 52 H 0.093 0.907 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.698 28.933 -13.566 35.603 hybrid contribution -1.017 -0.497 1.590 1.952 sum -16.715 28.436 -11.976 35.091 Atomic orbital electron populations 1.22443 0.87090 1.02262 1.00932 1.61943 1.08642 1.14910 1.43942 1.22411 1.01110 0.87864 1.00960 1.22136 1.00860 0.92487 0.91430 1.21233 1.00880 0.93840 0.97390 1.21612 1.04582 0.88716 1.01554 1.21036 0.78196 0.89073 0.80646 1.90699 1.42614 1.81759 1.32048 1.48660 1.55027 1.08167 1.23616 1.22243 0.96560 0.98370 0.84959 1.22768 1.03967 0.92751 0.97235 1.22230 0.98318 0.93875 0.96665 0.90124 1.21886 0.91371 0.94149 0.98022 1.60018 1.34161 1.04352 1.33379 1.21629 0.93402 0.93010 0.99035 1.21018 0.90903 0.82042 0.82426 1.90540 1.31295 1.63628 1.64370 1.42040 1.12540 1.19026 1.49715 1.19025 0.92614 1.03238 1.31019 0.92624 1.26098 1.02822 0.96940 0.95368 1.69808 1.33444 1.18802 1.35491 0.85378 0.77792 0.79331 0.79106 1.18324 1.20076 1.15300 1.22148 0.98549 0.80189 1.00222 0.95067 0.90896 0.91816 0.90797 0.90969 0.95110 0.93671 0.89626 0.92630 0.92703 0.86682 0.86543 0.89781 0.88993 0.89557 0.89293 0.93115 0.90224 0.83412 0.90331 0.86973 0.77463 0.91174 0.90695 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 127.69 1.19 1.44 16 2 N -0.57 -7.50 5.02 -948.82 -4.76 -12.26 16 3 C 0.02 0.22 9.57 127.69 1.22 1.45 16 4 C 0.06 0.63 4.96 86.30 0.43 1.06 16 5 C -0.09 -1.36 4.43 30.59 0.14 -1.23 16 6 C -0.12 -1.39 4.89 29.85 0.15 -1.24 16 7 C 0.52 10.20 7.85 87.66 0.69 10.89 16 8 O -0.59 -17.13 16.24 -3.05 -0.05 -17.18 16 9 N -0.62 -10.25 3.33 -811.84 -2.70 -12.95 16 10 C 0.10 1.03 6.48 86.73 0.56 1.59 16 11 C -0.13 -1.61 5.90 31.78 0.19 -1.43 16 12 C -0.09 -1.51 3.24 -9.41 -0.03 -1.54 16 13 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 14 C 0.07 1.35 5.18 86.30 0.45 1.80 16 15 N -0.69 -18.26 6.13 -517.91 -3.17 -21.43 16 16 C 0.06 1.76 6.17 85.56 0.53 2.29 16 17 C 0.45 19.64 7.82 87.66 0.69 20.33 16 18 O -0.61 -33.27 15.78 -3.05 -0.05 -33.32 16 19 N -0.59 -27.33 5.09 -306.97 -1.56 -28.90 16 20 C -0.33 -19.13 10.16 84.04 0.85 -18.28 16 21 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.93 -56.02 13.96 21.66 0.30 -55.72 16 24 Si 0.96 38.23 27.74 68.60 1.90 40.14 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 28 C 0.11 1.97 6.38 86.85 0.55 2.52 16 29 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.75 8.12 -2.38 -0.02 0.73 16 31 H 0.06 0.87 6.47 -2.39 -0.02 0.85 16 32 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 33 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 34 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.05 0.40 8.12 -2.39 -0.02 0.38 16 36 H 0.09 0.75 8.06 -2.39 -0.02 0.73 16 37 H 0.05 0.96 6.51 -2.39 -0.02 0.94 16 38 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.09 0.94 7.91 -2.39 -0.02 0.92 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 0.75 7.97 -2.39 -0.02 0.73 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.35 9.61 7.93 -89.70 -0.71 8.90 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 50 H 0.39 14.80 5.76 -92.71 -0.53 14.27 16 51 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 52 H 0.07 1.21 8.03 -2.39 -0.02 1.19 16 53 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 Total: -1.00 -82.63 424.39 -2.44 -85.07 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.41 Total: 37.19 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 8.06 Total: 19.36 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -11.90 Total: -131.26 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.10 Total: -50.50 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.14 kcal Total: -82.63 -2.44 -85.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690733063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.336 kcal (2) G-P(sol) polarization free energy of solvation -82.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds