Wall clock time and date at job start Sat Apr 11 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99975 * 2 1 4 4 C 1.46899 * 111.00207 * 123.95492 * 2 1 3 5 5 C 1.53000 * 109.46971 * 169.99861 * 4 2 1 6 6 C 1.50700 * 109.47227 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00236 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99883 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.01870 * 326.39792 * 9 8 6 11 11 C 1.54266 * 110.06952 * 87.81530 * 9 8 6 12 12 C 1.54888 * 104.19487 * 142.91630 * 11 9 8 13 13 C 1.54884 * 102.74902 * 322.05555 * 12 11 9 14 14 C 1.53870 * 110.03105 * 205.00400 * 9 8 6 15 15 H 1.08999 * 110.03418 * 121.33963 * 14 9 8 16 16 C 1.52998 * 110.03623 * 359.95270 * 14 9 8 17 17 N 1.46896 * 109.47624 * 174.99888 * 16 14 9 18 18 C 1.46899 * 111.00338 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47459 * 59.99812 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47211 * 300.00250 * 26 24 22 30 30 H 1.09002 * 109.47162 * 296.04494 * 1 2 3 31 31 H 1.09003 * 109.47490 * 56.04330 * 1 2 3 32 32 H 1.08998 * 109.47114 * 176.04908 * 1 2 3 33 33 H 1.09001 * 109.47298 * 183.95959 * 3 2 1 34 34 H 1.09001 * 109.47164 * 303.95132 * 3 2 1 35 35 H 1.08999 * 109.47046 * 63.95747 * 3 2 1 36 36 H 1.09000 * 109.47171 * 50.00194 * 4 2 1 37 37 H 1.08997 * 109.47213 * 289.99479 * 4 2 1 38 38 H 1.09004 * 109.47533 * 59.99795 * 5 4 2 39 39 H 1.09007 * 109.47348 * 299.99989 * 5 4 2 40 40 H 0.97000 * 119.99881 * 0.02562 * 8 6 5 41 41 H 1.09009 * 110.48462 * 261.59391 * 11 9 8 42 42 H 1.08999 * 110.48854 * 24.10211 * 11 9 8 43 43 H 1.08998 * 110.75496 * 80.37504 * 12 11 9 44 44 H 1.09006 * 110.75654 * 203.74014 * 12 11 9 45 45 H 1.08999 * 110.48610 * 279.26266 * 13 12 11 46 46 H 1.09001 * 110.48893 * 156.62176 * 13 12 11 47 47 H 1.09004 * 109.46677 * 55.00052 * 16 14 9 48 48 H 1.09004 * 109.46850 * 295.00351 * 16 14 9 49 49 H 1.00898 * 110.99977 * 303.96136 * 17 16 14 50 50 H 1.09003 * 109.46477 * 60.00383 * 18 17 16 51 51 H 1.08993 * 109.47002 * 300.00709 * 18 17 16 52 52 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 53 53 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9702 6 6 4.0447 -1.7406 2.1375 7 8 3.2964 -2.1126 3.0164 8 7 5.3593 -2.0304 2.2042 9 6 5.8845 -2.7933 3.3392 10 1 5.3264 -2.5493 4.2431 11 6 5.7881 -4.3056 3.0506 12 6 7.0750 -4.8951 3.6794 13 6 8.1358 -3.8105 3.3671 14 6 7.3772 -2.4784 3.5404 15 1 7.5433 -2.0809 4.5416 16 6 7.8458 -1.4682 2.4913 17 7 9.2372 -1.0859 2.7667 18 6 9.7223 -0.1150 1.7768 19 6 11.1493 0.2530 2.0916 20 8 11.7075 -0.2450 3.0464 21 7 11.8056 1.1346 1.3115 22 6 13.1021 1.4737 1.6012 23 1 13.5989 1.0309 2.4518 24 6 13.7769 2.3869 0.8003 25 7 13.1722 2.9260 -0.2344 26 14 15.5435 2.8484 1.1945 27 1 16.3949 1.6326 1.1479 28 1 16.0321 3.8340 0.1970 29 1 15.6078 3.4458 2.5526 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0827 1.3433 -0.0710 34 1 1.5898 1.9163 -0.8525 35 1 1.7044 1.8723 0.9233 36 1 1.5090 -1.7407 1.1756 37 1 1.7976 -0.2248 2.0627 38 1 3.9910 0.0194 0.9321 39 1 3.7024 -1.4966 0.0449 40 1 5.9577 -1.7331 1.5010 41 1 4.9030 -4.7290 3.5256 42 1 5.7676 -4.4885 1.9763 43 1 6.9565 -5.0210 4.7556 44 1 7.3384 -5.8408 3.2055 45 1 8.4969 -3.9136 2.3438 46 1 8.9640 -3.8725 4.0729 47 1 7.2112 -0.5828 2.5307 48 1 7.7818 -1.9174 1.5002 49 1 9.3345 -0.7261 3.7044 50 1 9.1007 0.7798 1.8108 51 1 9.6713 -0.5552 0.7810 52 1 11.3593 1.5325 0.5477 53 1 13.6434 3.5633 -0.7937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699028692.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:22 Heat of formation + Delta-G solvation = -99.448878 kcal Electronic energy + Delta-G solvation = -29644.821617 eV Core-core repulsion = 25549.839683 eV Total energy + Delta-G solvation = -4094.981934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.31296 -40.14392 -39.39901 -38.18284 -36.43142 -35.69719 -34.70924 -33.25351 -32.36311 -31.16254 -28.66971 -28.48253 -28.10692 -26.17215 -25.78399 -24.23037 -22.58862 -21.63891 -21.31136 -21.04056 -20.33190 -19.86233 -18.40671 -17.83145 -17.21390 -16.95144 -16.80104 -16.48037 -16.38193 -15.97356 -15.86259 -15.81038 -15.62049 -15.22272 -14.93834 -14.85633 -14.81841 -14.30829 -13.98156 -13.93035 -13.47894 -13.30616 -13.20005 -13.10288 -12.82249 -12.79381 -12.72229 -12.59247 -12.44770 -12.41895 -12.22779 -12.11747 -11.91334 -11.88237 -11.73087 -11.56572 -11.48609 -11.47276 -10.88763 -10.32402 -10.04553 -9.99926 -9.38039 -9.26956 -8.45583 -5.93970 1.40450 1.42547 1.53080 1.64226 2.07723 2.14337 2.30043 2.89334 3.07056 3.21980 3.45153 3.68275 3.72139 3.82771 3.87676 3.97982 4.14700 4.27448 4.29091 4.33851 4.40661 4.46943 4.48610 4.54429 4.56326 4.60275 4.61510 4.64495 4.65444 4.70364 4.75313 4.81826 4.88663 4.91832 4.96318 5.00639 5.07427 5.09064 5.20789 5.24866 5.38752 5.42002 5.51856 5.58784 5.90488 5.99136 6.03965 6.12521 6.39782 6.54316 6.61908 7.14205 7.25261 7.58485 8.14034 8.71466 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.002147 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.070693 B =13039.364128 C =15576.537075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.556 5.556 3 C 0.015 3.985 4 C 0.075 3.925 5 C -0.132 4.132 6 C 0.513 3.487 7 O -0.585 6.585 8 N -0.716 5.716 9 C 0.151 3.849 10 H 0.075 0.925 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.090 4.090 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.677 5.677 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.023 0.977 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.413 0.587 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.342 0.658 50 H 0.067 0.933 51 H 0.108 0.892 52 H 0.397 0.603 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.489 -7.930 -1.547 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.280 5.280 3 C -0.133 4.133 4 C -0.054 4.054 5 C -0.172 4.172 6 C 0.301 3.699 7 O -0.465 6.465 8 N -0.370 5.370 9 C 0.045 3.955 10 H 0.093 0.907 11 C -0.165 4.165 12 C -0.158 4.158 13 C -0.141 4.141 14 C -0.109 4.109 15 H 0.095 0.905 16 C -0.064 4.064 17 N -0.309 5.309 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.253 0.747 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.106 0.894 49 H 0.161 0.839 50 H 0.084 0.916 51 H 0.126 0.874 52 H 0.231 0.769 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.160 -9.128 -1.221 24.924 hybrid contribution 0.278 1.886 0.679 2.023 sum -22.883 -7.243 -0.542 24.008 Atomic orbital electron populations 1.22427 0.86385 1.02786 1.00935 1.62015 1.08854 1.14611 1.42473 1.22545 1.01658 0.88179 1.00873 1.21720 0.94176 0.98464 0.91024 1.21631 0.96269 1.02049 0.97213 1.21075 0.82167 0.79147 0.87510 1.90686 1.58372 1.55378 1.42094 1.46325 1.08573 1.56273 1.25824 1.21546 0.93068 0.91435 0.89415 0.90703 1.22702 0.98264 0.93987 1.01556 1.22480 0.93973 0.98461 1.00929 1.22237 0.97164 0.92634 1.02086 1.21940 0.92707 0.96657 0.99625 0.90500 1.22110 0.87123 0.97479 0.99680 1.60031 1.20770 1.44201 1.05947 1.21542 0.91142 0.95754 0.98254 1.20954 0.90101 0.81981 0.84545 1.90497 1.70700 1.57354 1.32501 1.41929 1.12603 1.39071 1.27488 1.19615 0.89888 1.24007 1.12845 0.90418 1.26013 1.03951 0.96077 0.95240 1.69658 1.39456 1.30112 1.16803 0.85015 0.77196 0.78163 0.78129 1.19784 1.19509 1.19781 0.95852 0.90063 0.91057 0.90293 0.90306 0.95923 0.91049 0.95617 0.87196 0.86257 0.74715 0.91997 0.90722 0.91196 0.90493 0.91379 0.92206 0.93928 0.89432 0.83922 0.91556 0.87420 0.76918 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.57 127.69 1.22 1.50 16 2 N -0.56 -7.98 5.02 -948.85 -4.76 -12.74 16 3 C 0.02 0.18 9.32 127.69 1.19 1.37 16 4 C 0.07 1.22 4.25 86.30 0.37 1.58 16 5 C -0.13 -1.74 5.62 29.85 0.17 -1.57 16 6 C 0.51 9.62 7.83 87.66 0.69 10.31 16 7 O -0.58 -15.81 15.64 -3.05 -0.05 -15.85 16 8 N -0.72 -11.09 4.39 -439.10 -1.93 -13.02 16 9 C 0.15 2.69 3.22 45.71 0.15 2.84 16 10 H 0.07 1.62 7.57 -2.39 -0.02 1.60 16 11 C -0.13 -2.11 6.53 31.67 0.21 -1.91 16 12 C -0.12 -1.93 6.91 31.88 0.22 -1.71 16 13 C -0.10 -1.98 6.19 31.67 0.20 -1.79 16 14 C -0.09 -1.66 3.09 -10.07 -0.03 -1.69 16 15 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 16 C 0.06 1.23 3.61 86.30 0.31 1.55 16 17 N -0.68 -19.07 5.95 -517.94 -3.08 -22.15 16 18 C 0.07 2.04 6.17 85.56 0.53 2.57 16 19 C 0.44 20.03 7.82 87.66 0.69 20.72 16 20 O -0.62 -33.84 15.78 -3.07 -0.05 -33.89 16 21 N -0.57 -28.66 5.29 -306.98 -1.62 -30.29 16 22 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 26 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 33 H 0.08 0.82 6.47 -2.39 -0.02 0.80 16 34 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 35 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.07 1.30 8.02 -2.39 -0.02 1.28 16 37 H 0.03 0.50 8.08 -2.39 -0.02 0.48 16 38 H 0.11 1.13 6.55 -2.39 -0.02 1.12 16 39 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.41 4.75 5.90 -92.71 -0.55 4.20 16 41 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.07 1.38 7.76 -2.39 -0.02 1.36 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.04 0.73 7.42 -2.38 -0.02 0.71 16 48 H 0.09 1.41 7.11 -2.38 -0.02 1.40 16 49 H 0.34 10.55 8.43 -89.70 -0.76 9.79 16 50 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 52 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 53 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -70.69 421.79 -3.12 -73.80 By element: Atomic # 1 Polarization: 43.61 SS G_CDS: -1.12 Total: 42.49 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 7.18 Total: 15.65 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -11.11 Total: -126.70 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.10 Total: -49.74 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.69 -3.12 -73.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699028692.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.645 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds