Wall clock time and date at job start Sat Apr 11 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46891 * 110.99980 * 2 1 4 4 C 1.46898 * 110.99754 * 123.95528 * 2 1 3 5 5 C 1.53002 * 109.46811 * 169.99778 * 4 2 1 6 6 C 1.50694 * 109.47308 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00263 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00151 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99966 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46912 * 184.97960 * 9 8 6 11 11 H 1.09008 * 109.45195 * 186.09717 * 10 9 8 12 12 C 1.53034 * 109.46496 * 66.12448 * 10 9 8 13 13 C 1.53123 * 109.27909 * 180.80553 * 12 10 9 14 14 C 1.53109 * 109.16093 * 57.65338 * 13 12 10 15 15 C 1.53040 * 109.27991 * 302.34323 * 14 13 12 16 16 N 1.46844 * 109.46249 * 306.06588 * 10 9 8 17 17 C 1.46897 * 111.00375 * 305.86132 * 16 10 9 18 18 C 1.50695 * 109.47222 * 164.00593 * 17 16 10 19 19 O 1.21297 * 120.00247 * 359.97438 * 18 17 16 20 20 N 1.34784 * 120.00083 * 179.97438 * 18 17 16 21 21 C 1.37091 * 120.00078 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00205 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00109 * 180.27705 * 21 20 18 24 24 N 1.31416 * 120.00523 * 179.73066 * 23 21 20 25 25 Si 1.86801 * 119.99938 * 359.72488 * 23 21 20 26 26 H 1.48506 * 109.47055 * 90.00043 * 25 23 21 27 27 H 1.48497 * 109.47358 * 210.00054 * 25 23 21 28 28 H 1.48503 * 109.47185 * 330.00506 * 25 23 21 29 29 H 1.09006 * 109.47031 * 296.04702 * 1 2 3 30 30 H 1.09002 * 109.47345 * 56.04318 * 1 2 3 31 31 H 1.09004 * 109.47155 * 176.04864 * 1 2 3 32 32 H 1.09000 * 109.47257 * 183.95401 * 3 2 1 33 33 H 1.09008 * 109.47590 * 303.95778 * 3 2 1 34 34 H 1.09009 * 109.47398 * 63.95400 * 3 2 1 35 35 H 1.09000 * 109.47500 * 50.00087 * 4 2 1 36 36 H 1.09000 * 109.47468 * 289.99521 * 4 2 1 37 37 H 1.09000 * 109.46836 * 59.99902 * 5 4 2 38 38 H 1.09005 * 109.47542 * 300.00328 * 5 4 2 39 39 H 0.96995 * 120.00148 * 359.97438 * 8 6 5 40 40 H 1.08995 * 109.47293 * 64.97585 * 9 8 6 41 41 H 1.08998 * 109.46977 * 304.97426 * 9 8 6 42 42 H 1.09004 * 109.50489 * 300.74567 * 12 10 9 43 43 H 1.09003 * 109.50520 * 60.81902 * 12 10 9 44 44 H 1.08997 * 109.51666 * 177.56052 * 13 12 10 45 45 H 1.09006 * 109.51845 * 297.68059 * 13 12 10 46 46 H 1.09002 * 109.50540 * 62.28678 * 14 13 12 47 47 H 1.09002 * 109.50422 * 182.37110 * 14 13 12 48 48 H 1.08994 * 109.46618 * 299.16861 * 15 14 13 49 49 H 1.08997 * 109.46394 * 179.19755 * 15 14 13 50 50 H 1.09003 * 109.47446 * 44.00308 * 17 16 10 51 51 H 1.09005 * 109.46816 * 284.00195 * 17 16 10 52 52 H 0.97000 * 119.99563 * 0.02562 * 20 18 17 53 53 H 0.96991 * 120.00220 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0446 -1.7407 2.1375 7 8 3.2963 -2.1127 3.0165 8 7 5.3594 -2.0296 2.2047 9 6 5.8844 -2.7935 3.3392 10 6 7.4087 -2.8759 3.2368 11 1 7.7901 -3.5333 4.0182 12 6 8.0077 -1.4782 3.4092 13 6 9.5316 -1.5625 3.2859 14 6 9.8932 -2.1679 1.9269 15 6 9.2396 -3.5457 1.7975 16 7 7.7825 -3.4113 1.9215 17 6 7.1118 -4.6927 1.6647 18 6 7.1933 -5.0167 0.1953 19 8 7.7546 -4.2548 -0.5636 20 7 6.6427 -6.1531 -0.2758 21 6 6.7164 -6.4477 -1.6127 22 1 7.2161 -5.7693 -2.2884 23 6 6.1437 -7.6164 -2.0993 24 7 6.2097 -7.8962 -3.3816 25 14 5.2799 -8.7901 -0.9306 26 1 3.8445 -8.4224 -0.8310 27 1 5.4008 -10.1782 -1.4440 28 1 5.9076 -8.7025 0.4124 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5740 -0.8524 31 1 -0.3634 -1.0253 -0.0708 32 1 3.0828 1.3432 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9234 35 1 1.5090 -1.7407 1.1756 36 1 1.7976 -0.2248 2.0628 37 1 3.9909 0.0193 0.9322 38 1 3.7024 -1.4966 0.0450 39 1 5.9578 -1.7324 1.5016 40 1 5.4644 -3.7992 3.3256 41 1 5.6091 -2.2973 4.2699 42 1 7.6162 -0.8166 2.6364 43 1 7.7425 -1.0872 4.3915 44 1 9.9592 -0.5630 3.3649 45 1 9.9272 -2.1920 4.0831 46 1 9.5313 -1.5173 1.1307 47 1 10.9757 -2.2695 1.8501 48 1 9.6123 -4.1999 2.5856 49 1 9.4834 -3.9734 0.8251 50 1 6.0660 -4.6218 1.9637 51 1 7.6011 -5.4802 2.2381 52 1 6.1935 -6.7622 0.3310 53 1 5.8102 -8.7122 -3.7211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714115564.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:14 Heat of formation + Delta-G solvation = -87.403630 kcal Electronic energy + Delta-G solvation = -31202.381968 eV Core-core repulsion = 27107.922354 eV Total energy + Delta-G solvation = -4094.459613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.29731 -40.44693 -39.39333 -38.27810 -36.00864 -35.71314 -34.36586 -33.68077 -32.80317 -31.66344 -29.17336 -28.48236 -27.66431 -26.29495 -25.62005 -24.06047 -22.62760 -22.16871 -21.22486 -21.19043 -20.37823 -20.13278 -18.25223 -17.84645 -17.16573 -17.03393 -16.82552 -16.48392 -16.39750 -15.95027 -15.85412 -15.57481 -15.37645 -15.25628 -14.94343 -14.79623 -14.73487 -14.39763 -14.20956 -14.05876 -13.82288 -13.67532 -13.28508 -13.14120 -13.10384 -12.81772 -12.75769 -12.68548 -12.61881 -12.42868 -12.40483 -12.10057 -11.99504 -11.92117 -11.57453 -11.52089 -11.27203 -11.19176 -10.88919 -10.32910 -10.20663 -9.96319 -9.34771 -9.20963 -8.39867 -5.99135 1.28308 1.33920 1.41415 1.67066 1.99432 2.20654 2.22197 2.60212 3.08524 3.15997 3.23370 3.69070 3.81185 3.85355 3.98848 4.01324 4.09703 4.14639 4.26794 4.29246 4.33642 4.36601 4.40683 4.47000 4.48072 4.57355 4.62986 4.64924 4.67473 4.70033 4.78268 4.92507 4.93979 4.95914 4.99566 5.00212 5.06347 5.06869 5.12595 5.28758 5.36690 5.51279 5.52975 5.56420 5.93163 6.00267 6.05147 6.07588 6.22582 6.61373 6.61980 6.91450 7.28149 7.43069 8.00112 8.77733 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006514 B = 0.004075 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4297.480373 B = 6869.870958 C = 9916.384861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.565 5.565 3 C 0.018 3.982 4 C 0.079 3.921 5 C -0.133 4.133 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.708 5.708 9 C 0.122 3.878 10 C 0.076 3.924 11 H 0.072 0.928 12 C -0.105 4.105 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.060 3.940 16 N -0.521 5.521 17 C 0.048 3.952 18 C 0.457 3.543 19 O -0.596 6.596 20 N -0.597 5.597 21 C -0.321 4.321 22 H 0.059 0.941 23 C -0.012 4.012 24 N -0.934 5.934 25 Si 0.957 3.043 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.414 0.586 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.051 0.949 50 H 0.109 0.891 51 H 0.074 0.926 52 H 0.385 0.615 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 15.535 18.261 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.290 5.290 3 C -0.130 4.130 4 C -0.049 4.049 5 C -0.173 4.173 6 C 0.301 3.699 7 O -0.468 6.468 8 N -0.360 5.360 9 C -0.002 4.002 10 C -0.032 4.032 11 H 0.090 0.910 12 C -0.143 4.143 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.068 4.068 16 N -0.247 5.247 17 C -0.083 4.083 18 C 0.245 3.755 19 O -0.479 6.479 20 N -0.239 5.239 21 C -0.450 4.450 22 H 0.077 0.923 23 C -0.211 4.211 24 N -0.575 5.575 25 Si 0.778 3.222 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.158 1.158 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.251 0.749 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.126 0.874 51 H 0.091 0.909 52 H 0.220 0.780 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.623 15.770 17.424 23.647 hybrid contribution -0.242 -1.295 0.615 1.453 sum -2.864 14.476 18.039 23.306 Atomic orbital electron populations 1.22409 0.86218 1.02555 1.01166 1.61949 1.09056 1.15035 1.42929 1.22523 1.01462 0.87852 1.01122 1.21673 0.93694 0.98293 0.91263 1.21590 0.96711 1.02054 0.96949 1.20877 0.82169 0.79579 0.87303 1.90660 1.58307 1.55708 1.42097 1.45926 1.08301 1.55711 1.26065 1.21523 0.92609 0.96166 0.89881 1.22025 0.93418 0.98100 0.89622 0.91019 1.21612 0.95516 0.94436 1.02737 1.21549 0.95562 1.01633 0.96276 1.21519 0.99754 0.95105 0.98440 1.22074 0.86238 0.98180 1.00282 1.61382 1.08327 1.25057 1.29909 1.21875 1.01989 0.92617 0.91845 1.20762 0.81837 0.81614 0.91309 1.90531 1.47031 1.50128 1.60253 1.42086 1.52979 1.21120 1.07761 1.18980 1.35667 1.06591 0.83776 0.92264 1.25986 0.98108 0.99033 0.97952 1.69790 1.45972 1.27011 1.14769 0.85475 0.79372 0.78007 0.79385 1.18620 1.19936 1.15813 0.95185 0.90021 0.91681 0.90628 0.90326 0.95167 0.91781 0.94504 0.86797 0.88505 0.74888 0.92330 0.89722 0.91641 0.89388 0.90416 0.91266 0.92566 0.90944 0.94267 0.93076 0.87355 0.90858 0.78011 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.57 127.69 1.22 1.66 16 2 N -0.57 -11.92 5.02 -948.82 -4.76 -16.68 16 3 C 0.02 0.30 9.32 127.69 1.19 1.49 16 4 C 0.08 1.84 4.25 86.30 0.37 2.21 16 5 C -0.13 -2.96 5.62 29.85 0.17 -2.80 16 6 C 0.51 13.38 7.83 87.65 0.69 14.06 16 7 O -0.59 -18.92 15.98 -3.05 -0.05 -18.97 16 8 N -0.71 -16.31 5.08 -463.06 -2.35 -18.66 16 9 C 0.12 2.50 4.58 86.38 0.40 2.90 16 10 C 0.08 1.43 2.11 44.94 0.09 1.52 16 11 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 12 C -0.11 -1.61 5.27 30.65 0.16 -1.45 16 13 C -0.11 -1.70 6.00 30.67 0.18 -1.52 16 14 C -0.11 -2.36 6.09 30.64 0.19 -2.17 16 15 C 0.06 1.61 5.11 86.33 0.44 2.06 16 16 N -0.52 -13.76 3.44 -875.65 -3.01 -16.77 16 17 C 0.05 1.45 5.26 85.56 0.45 1.90 16 18 C 0.46 20.13 7.47 87.65 0.65 20.79 16 19 O -0.60 -31.39 14.41 -3.08 -0.04 -31.44 16 20 N -0.60 -28.25 5.09 -306.98 -1.56 -29.81 16 21 C -0.32 -18.74 10.16 84.04 0.85 -17.89 16 22 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 24 N -0.93 -56.64 13.96 21.66 0.30 -56.34 16 25 Si 0.96 39.82 27.73 68.60 1.90 41.73 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.23 -8.33 6.53 99.48 0.65 -7.68 16 29 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.06 1.20 8.12 -2.38 -0.02 1.18 16 32 H 0.08 1.15 6.47 -2.39 -0.02 1.13 16 33 H 0.08 1.11 8.12 -2.38 -0.02 1.09 16 34 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.06 1.70 8.02 -2.39 -0.02 1.68 16 36 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.11 1.99 6.55 -2.39 -0.02 1.97 16 38 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.41 9.72 7.45 -92.71 -0.69 9.03 16 40 H 0.06 1.32 6.36 -2.39 -0.02 1.30 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.12 7.36 -2.39 -0.02 1.11 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 45 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 1.85 6.34 -2.39 -0.02 1.83 16 50 H 0.11 3.01 5.52 -2.39 -0.01 3.00 16 51 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 52 H 0.39 15.55 5.77 -92.71 -0.53 15.01 16 53 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -76.47 411.17 -2.43 -78.90 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -0.38 Total: 45.50 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 7.52 Total: 22.54 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -11.39 Total: -138.26 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.09 Total: -50.40 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.90 Total: 41.73 kcal Total: -76.47 -2.43 -78.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714115564.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.506 kcal (2) G-P(sol) polarization free energy of solvation -76.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds